Wall clock time and date at job start Tue Mar 31 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46858 * 2 1 4 4 C 1.52993 * 109.47366 * 239.99544 * 2 1 3 5 5 N 1.46502 * 109.46974 * 119.99365 * 2 1 3 6 6 C 1.34584 * 125.74791 * 75.02237 * 5 2 1 7 7 N 1.30870 * 107.62933 * 179.73198 * 6 5 2 8 8 C 1.34551 * 107.26231 * 0.36045 * 7 6 5 9 9 C 1.47879 * 126.04467 * 179.89531 * 8 7 6 10 10 O 1.21554 * 120.00092 * 172.88976 * 9 8 7 11 11 N 1.34777 * 119.99922 * 352.88537 * 9 8 7 12 12 C 1.46930 * 120.63185 * 4.03042 * 11 9 8 13 13 C 1.53192 * 108.77514 * 233.58648 * 12 11 9 14 14 C 1.53038 * 109.31033 * 305.36167 * 13 12 11 15 15 C 1.53043 * 109.53821 * 61.36624 * 14 13 12 16 16 C 1.46924 * 120.63153 * 184.00056 * 11 9 8 17 17 H 1.08992 * 109.70788 * 246.27189 * 16 11 9 18 18 C 1.53000 * 109.58495 * 6.63418 * 16 11 9 19 19 N 1.46503 * 109.46846 * 287.44709 * 18 16 11 20 20 C 1.36932 * 120.00175 * 175.63738 * 19 18 16 21 21 H 1.08003 * 120.00270 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00126 * 179.72646 * 20 19 18 23 23 N 1.31616 * 119.99772 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99924 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46868 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47057 * 120.00027 * 24 22 20 27 27 H 1.48495 * 109.46880 * 240.00079 * 24 22 20 28 28 N 1.28848 * 125.74939 * 254.97786 * 5 2 1 29 29 H 1.09000 * 109.47663 * 300.00338 * 1 2 3 30 30 H 1.09000 * 109.47223 * 60.00604 * 1 2 3 31 31 H 1.09009 * 109.46960 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47192 * 179.97438 * 3 2 1 33 33 H 1.09009 * 109.47153 * 299.99354 * 3 2 1 34 34 H 1.08993 * 109.47604 * 59.99971 * 3 2 1 35 35 H 1.08999 * 109.47179 * 300.00155 * 4 2 1 36 36 H 1.09000 * 109.47071 * 59.99758 * 4 2 1 37 37 H 1.09002 * 109.47449 * 180.02562 * 4 2 1 38 38 H 1.08009 * 126.18627 * 359.96252 * 6 5 2 39 39 H 1.09000 * 109.59127 * 113.79340 * 12 11 9 40 40 H 1.09001 * 109.70289 * 353.43924 * 12 11 9 41 41 H 1.08997 * 109.49832 * 185.41203 * 13 12 11 42 42 H 1.09002 * 109.50147 * 65.31103 * 13 12 11 43 43 H 1.09002 * 109.46158 * 301.34670 * 14 13 12 44 44 H 1.08997 * 109.45248 * 181.37887 * 14 13 12 45 45 H 1.09005 * 109.49883 * 178.68483 * 15 14 13 46 46 H 1.08994 * 109.52592 * 58.60226 * 15 14 13 47 47 H 1.08999 * 109.47479 * 167.45595 * 18 16 11 48 48 H 1.08997 * 109.47581 * 47.44492 * 18 16 11 49 49 H 0.97004 * 120.00256 * 355.64544 * 19 18 16 50 50 H 0.97001 * 119.99761 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 2.0142 -2.0220 1.3923 7 7 2.5333 -2.2505 2.5717 8 6 2.8503 -1.0573 3.1065 9 6 3.4624 -0.8336 4.4340 10 8 3.8223 0.2815 4.7572 11 7 3.6211 -1.8662 5.2854 12 6 3.2726 -3.2339 4.8768 13 6 2.3076 -3.8260 5.9088 14 6 2.9331 -3.7265 7.3020 15 6 3.1717 -2.2558 7.6520 16 6 4.1465 -1.6459 6.6397 17 1 5.1214 -2.1232 6.7379 18 6 4.2821 -0.1441 6.8991 19 7 5.4111 0.3843 6.1294 20 6 5.6726 1.7284 6.1326 21 1 5.0469 2.3990 6.7029 22 6 6.7458 2.2285 5.4078 23 7 7.5116 1.4106 4.7172 24 14 7.1029 4.0621 5.4128 25 1 6.1027 4.7588 6.2608 26 1 8.4640 4.2997 5.9570 27 1 7.0263 4.5850 4.0251 28 7 2.5247 -0.1254 2.2376 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2076 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 1.6519 -2.7674 0.6998 39 1 4.1756 -3.8425 4.8295 40 1 2.7935 -3.2141 3.8979 41 1 2.1164 -4.8721 5.6698 42 1 1.3697 -3.2709 5.8906 43 1 3.8829 -4.2610 7.3127 44 1 2.2589 -4.1693 8.0350 45 1 3.5956 -2.1843 8.6537 46 1 2.2260 -1.7151 7.6177 47 1 4.4551 0.0269 7.9616 48 1 3.3660 0.3616 6.5940 49 1 5.9733 -0.2179 5.6174 50 1 8.2617 1.7600 4.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280451725.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:27 Heat of formation + Delta-G solvation = 95.280740 kcal Electronic energy + Delta-G solvation = -31054.438723 eV Core-core repulsion = 27120.242517 eV Total energy + Delta-G solvation = -3934.196205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.47909 -41.27477 -38.35338 -38.05937 -36.33808 -34.24084 -33.63321 -33.19051 -31.79070 -31.43265 -28.51886 -28.39658 -27.75185 -26.23369 -25.19981 -24.38303 -23.81803 -22.70467 -21.52458 -21.03845 -20.32289 -19.06160 -18.06049 -17.53296 -17.43623 -16.95045 -16.69076 -16.18457 -15.78129 -15.46368 -15.31763 -15.17092 -15.03282 -14.89310 -14.82233 -14.54398 -14.04274 -13.86973 -13.62666 -13.52749 -13.28738 -13.25898 -13.17654 -12.96605 -12.83311 -12.79174 -12.60594 -12.39034 -12.13793 -12.10952 -11.97067 -11.87437 -11.78413 -11.66355 -11.36969 -11.36214 -10.88966 -10.54246 -10.45014 -10.11616 -9.41122 -8.62761 -7.83389 -5.02027 0.54393 1.22030 1.27548 1.39375 1.43351 1.52304 2.07849 2.52663 2.61285 3.15361 3.28933 3.50094 3.66437 3.71397 3.77435 3.85204 3.90084 4.00454 4.10514 4.22514 4.38170 4.43703 4.48972 4.54831 4.56389 4.62775 4.67050 4.67988 4.76976 4.78976 4.84351 4.90485 4.98557 5.05277 5.08030 5.13390 5.13859 5.17209 5.21391 5.23769 5.26914 5.30703 5.51394 5.55241 5.58028 5.77853 6.11724 6.37283 6.55869 7.08863 7.42261 7.49905 8.21280 8.45032 9.42391 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008046 B = 0.005216 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.261251 B = 5367.237744 C = 8260.370473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.157 3.843 3 C -0.150 4.150 4 C -0.154 4.154 5 N -0.291 5.291 6 C 0.198 3.802 7 N -0.495 5.495 8 C 0.131 3.869 9 C 0.557 3.443 10 O -0.484 6.484 11 N -0.591 5.591 12 C 0.058 3.942 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.117 4.117 16 C 0.146 3.854 17 H 0.063 0.937 18 C 0.163 3.837 19 N -0.702 5.702 20 C -0.195 4.195 21 H 0.060 0.940 22 C -0.090 4.090 23 N -0.978 5.978 24 Si 0.966 3.034 25 H -0.271 1.271 26 H -0.289 1.289 27 H -0.301 1.301 28 N -0.288 5.288 29 H 0.042 0.958 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.112 0.888 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.049 0.951 38 H 0.276 0.724 39 H 0.055 0.945 40 H 0.154 0.846 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.020 0.980 48 H 0.019 0.981 49 H 0.364 0.636 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.118 -15.157 -11.783 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.077 3.923 3 C -0.207 4.207 4 C -0.212 4.212 5 N -0.087 5.087 6 C -0.095 4.095 7 N -0.222 5.222 8 C -0.148 4.148 9 C 0.340 3.660 10 O -0.352 6.352 11 N -0.327 5.327 12 C -0.064 4.064 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.156 4.156 16 C 0.043 3.957 17 H 0.081 0.919 18 C 0.036 3.964 19 N -0.342 5.342 20 C -0.328 4.328 21 H 0.078 0.922 22 C -0.280 4.280 23 N -0.633 5.633 24 Si 0.797 3.203 25 H -0.195 1.195 26 H -0.216 1.216 27 H -0.230 1.230 28 N -0.128 5.128 29 H 0.062 0.938 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.131 0.869 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.068 0.932 38 H 0.292 0.708 39 H 0.073 0.927 40 H 0.170 0.830 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.038 0.962 48 H 0.037 0.963 49 H 0.196 0.804 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -19.827 -13.927 -11.261 26.719 hybrid contribution 0.978 1.152 -0.330 1.547 sum -18.849 -12.775 -11.591 25.551 Atomic orbital electron populations 1.22256 0.89535 1.04888 1.04211 1.21622 0.96810 0.93389 0.80478 1.22004 1.00850 0.94077 1.03806 1.22297 1.01542 1.02594 0.94742 1.48104 1.40573 1.06854 1.13206 1.27432 0.99263 0.86878 0.95971 1.70622 1.19004 1.24135 1.08434 1.23887 1.06480 0.86504 0.97964 1.17164 0.80560 0.85930 0.82374 1.91313 1.44986 1.24627 1.74296 1.47658 1.64603 1.07791 1.12672 1.23111 0.99510 0.79729 1.04029 1.21825 0.97763 1.01829 0.94412 1.21532 1.01759 0.94436 0.97394 1.21863 0.98459 0.97304 0.97961 1.21455 0.96998 0.95435 0.81811 0.91949 1.20927 0.91012 0.91633 0.92808 1.42300 1.31311 1.04415 1.56170 1.19449 1.06679 0.85758 1.20909 0.92176 1.25362 0.99604 1.01397 1.01604 1.69845 1.20787 1.34430 1.38196 0.85130 0.77426 0.81211 0.76545 1.19523 1.21636 1.22955 1.74307 1.14723 1.26909 0.96821 0.93828 0.86811 0.89264 0.94290 0.86934 0.93600 0.88372 0.86678 0.93223 0.70839 0.92714 0.83000 0.88406 0.92757 0.91431 0.89495 0.89446 0.92167 0.96217 0.96310 0.80450 0.94865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.72 71.98 0.63 -0.92 16 2 C 0.16 2.57 1.23 3.60 0.00 2.57 16 3 C -0.15 -3.23 8.04 71.98 0.58 -2.65 16 4 C -0.15 -1.35 8.28 71.98 0.60 -0.75 16 5 N -0.29 -7.43 3.17 -311.59 -0.99 -8.42 16 6 C 0.20 4.09 11.71 180.30 2.11 6.20 16 7 N -0.50 -14.73 7.71 -193.01 -1.49 -16.22 16 8 C 0.13 5.26 7.72 137.13 1.06 6.32 16 9 C 0.56 26.08 7.44 86.80 0.65 26.73 16 10 O -0.48 -27.78 10.48 -3.88 -0.04 -27.82 16 11 N -0.59 -22.80 2.97 -798.36 -2.37 -25.17 16 12 C 0.06 1.68 6.31 86.36 0.54 2.23 16 13 C -0.12 -2.62 6.08 30.67 0.19 -2.43 16 14 C -0.11 -2.41 5.88 30.62 0.18 -2.23 16 15 C -0.12 -3.25 5.34 30.67 0.16 -3.08 16 16 C 0.15 5.59 2.91 44.98 0.13 5.72 16 17 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 18 C 0.16 7.87 4.89 86.38 0.42 8.30 16 19 N -0.70 -41.86 3.26 -343.45 -1.12 -42.98 16 20 C -0.20 -12.66 9.19 84.04 0.77 -11.88 16 21 H 0.06 3.85 7.83 -2.91 -0.02 3.83 16 22 C -0.09 -5.89 5.50 84.86 0.47 -5.42 16 23 N -0.98 -67.75 13.06 21.65 0.28 -67.47 16 24 Si 0.97 52.85 29.55 68.60 2.03 54.88 16 25 H -0.27 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 27 H -0.30 -16.59 7.11 99.48 0.71 -15.88 16 28 N -0.29 -11.22 11.10 -52.43 -0.58 -11.80 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.04 1.26 8.02 -2.39 -0.02 1.24 16 35 H 0.10 0.31 7.34 -2.39 -0.02 0.29 16 36 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 38 H 0.28 1.85 7.53 -2.91 -0.02 1.83 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 40 H 0.15 4.43 3.66 -58.20 -0.21 4.22 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.02 0.93 8.10 -2.39 -0.02 0.92 16 48 H 0.02 1.01 6.38 -2.39 -0.02 0.99 16 49 H 0.36 23.38 7.60 -92.71 -0.70 22.68 16 50 H 0.24 16.23 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -94.25 388.76 4.24 -90.01 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.03 Total: 26.31 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: 8.49 Total: 28.68 kcal Atomic # 7 Polarization: -165.80 SS G_CDS: -6.27 Total: -172.06 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.04 Total: -27.82 kcal Atomic # 14 Polarization: 52.85 SS G_CDS: 2.03 Total: 54.88 kcal Total: -94.25 4.24 -90.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280451725.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.290 kcal (2) G-P(sol) polarization free energy of solvation -94.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds