Wall clock time and date at job start Tue Mar 31 2020 18:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99446 * 2 1 4 4 C 1.52999 * 109.46957 * 269.99910 * 3 2 1 5 5 C 1.52996 * 109.47475 * 60.00303 * 4 3 2 6 6 C 1.53003 * 109.47321 * 300.00229 * 4 3 2 7 7 C 1.53002 * 109.47184 * 180.02562 * 4 3 2 8 8 N 1.46494 * 109.47235 * 180.02562 * 7 4 3 9 9 C 1.36946 * 120.00173 * 179.97438 * 8 7 4 10 10 H 1.07997 * 119.99347 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99784 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00335 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99539 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47243 * 179.97438 * 13 11 9 15 15 H 1.48506 * 109.47356 * 59.99881 * 13 11 9 16 16 H 1.48503 * 109.47285 * 299.99868 * 13 11 9 17 17 C 1.34772 * 120.00370 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00018 * 173.42041 * 17 2 1 19 19 C 1.50698 * 119.99896 * 353.41925 * 17 2 1 20 20 H 1.08998 * 109.45188 * 46.43247 * 19 17 2 21 21 C 1.53138 * 109.45493 * 166.38827 * 19 17 2 22 22 C 1.53462 * 109.31141 * 189.46292 * 21 19 17 23 23 C 1.50800 * 108.13238 * 311.29287 * 22 21 19 24 24 N 1.29839 * 128.52164 * 195.88909 * 23 22 21 25 25 N 1.28914 * 109.47558 * 179.90659 * 24 23 22 26 26 C 1.30830 * 109.74417 * 0.02562 * 25 24 23 27 27 N 1.34697 * 107.07056 * 0.03585 * 26 25 24 28 28 C 1.46263 * 128.84826 * 179.85209 * 27 26 25 29 29 H 1.08996 * 109.47350 * 94.00178 * 1 2 3 30 30 H 1.09005 * 109.46849 * 213.99933 * 1 2 3 31 31 H 1.09001 * 109.47157 * 333.99906 * 1 2 3 32 32 H 1.08999 * 109.46707 * 150.00240 * 3 2 1 33 33 H 1.08991 * 109.47353 * 29.99748 * 3 2 1 34 34 H 1.08997 * 109.47580 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46794 * 300.00136 * 5 4 3 36 36 H 1.09006 * 109.46908 * 59.99593 * 5 4 3 37 37 H 1.08999 * 109.47312 * 300.00264 * 6 4 3 38 38 H 1.09004 * 109.47015 * 59.99824 * 6 4 3 39 39 H 1.08997 * 109.47349 * 179.97438 * 6 4 3 40 40 H 1.09000 * 109.47501 * 59.99751 * 7 4 3 41 41 H 1.09006 * 109.46677 * 300.00086 * 7 4 3 42 42 H 0.96998 * 120.00300 * 359.97438 * 8 7 4 43 43 H 0.96996 * 120.00203 * 0.02562 * 12 11 9 44 44 H 1.09001 * 109.49715 * 309.41810 * 21 19 17 45 45 H 1.09002 * 109.49966 * 69.48088 * 21 19 17 46 46 H 1.08999 * 109.72619 * 70.94788 * 22 21 19 47 47 H 1.08993 * 109.73246 * 191.58439 * 22 21 19 48 48 H 1.08005 * 126.46813 * 180.02562 * 26 25 24 49 49 H 1.08999 * 109.59045 * 77.35854 * 28 27 26 50 50 H 1.08997 * 109.59411 * 316.90712 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 1.1156 1.8934 -2.1638 6 6 3.2793 0.6442 -2.1638 7 6 3.2178 3.0353 -1.4426 8 7 3.4614 3.4585 -2.8237 9 6 4.1344 4.6246 -3.0740 10 1 4.4851 5.2324 -2.2531 11 6 4.3656 5.0252 -4.3828 12 7 3.9385 4.2842 -5.3832 13 14 5.2830 6.6162 -4.7241 14 1 5.3990 6.8158 -6.1910 15 1 6.6403 6.5432 -4.1261 16 1 4.5395 7.7544 -4.1266 17 6 2.1390 -1.1671 -0.0005 18 8 3.3457 -1.1704 -0.1209 19 6 1.3930 -2.4680 0.1485 20 1 0.5279 -2.4684 -0.5147 21 6 2.3182 -3.6315 -0.2194 22 6 1.4986 -4.9266 -0.2970 23 6 0.6530 -5.0222 0.9480 24 7 0.0348 -6.0582 1.4280 25 7 -0.5786 -5.7281 2.5128 26 6 -0.3747 -4.4612 2.7679 27 7 0.4093 -3.9809 1.7835 28 6 0.9231 -2.6239 1.5995 29 1 -0.3634 -0.0717 -1.0251 30 1 -0.3633 -0.8520 0.5747 31 1 -0.3633 0.9237 0.4505 32 1 3.1498 1.1385 0.5138 33 1 1.6083 2.0284 0.5137 34 1 1.2972 2.2076 -3.1916 35 1 0.5706 0.9493 -2.1637 36 1 0.5264 2.6530 -1.6499 37 1 4.2317 0.5139 -1.6500 38 1 2.7344 -0.2998 -2.1637 39 1 3.4606 0.9586 -3.1916 40 1 4.1703 2.9047 -0.9288 41 1 2.6290 3.7951 -0.9286 42 1 3.1460 2.9127 -3.5610 43 1 3.4619 3.4582 -5.2059 44 1 2.7819 -3.4359 -1.1863 45 1 3.0922 -3.7353 0.5410 46 1 0.8561 -4.9033 -1.1772 47 1 2.1694 -5.7838 -0.3538 48 1 -0.7620 -3.9053 3.6090 49 1 1.7617 -2.4558 2.2752 50 1 0.1330 -1.9025 1.8075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282334839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:32 Heat of formation + Delta-G solvation = 60.732201 kcal Electronic energy + Delta-G solvation = -30063.108323 eV Core-core repulsion = 26127.413981 eV Total energy + Delta-G solvation = -3935.694343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.70729 -40.85126 -38.10162 -36.90772 -35.49597 -34.07366 -33.50017 -31.60166 -30.09381 -29.57275 -28.12374 -27.00387 -26.37440 -25.44416 -24.91021 -23.61320 -22.69687 -22.59450 -20.54271 -19.38625 -18.53742 -17.83679 -17.67024 -17.39040 -16.66363 -16.30387 -16.14803 -15.45062 -14.97950 -14.94070 -14.64821 -14.50041 -14.35073 -13.94329 -13.73606 -13.44758 -13.33501 -12.97771 -12.85245 -12.74640 -12.51386 -12.37579 -12.30641 -11.99425 -11.75081 -11.53729 -11.41627 -11.29604 -11.13255 -10.74883 -10.73766 -10.58646 -10.53018 -10.45593 -10.25119 -10.01547 -9.97190 -9.56228 -9.21038 -8.88192 -8.81378 -6.98964 -6.10581 -3.09381 1.41424 1.86777 2.26198 2.51047 2.63349 3.50662 3.54396 3.60858 3.71811 3.80280 3.85200 3.91797 4.19029 4.38823 4.42875 4.47208 4.66273 4.70956 4.73763 4.88434 4.91224 4.95457 5.04714 5.11202 5.20585 5.24524 5.29684 5.44618 5.49535 5.51686 5.60920 5.62831 5.73495 5.75226 5.76277 5.86882 5.98089 6.08493 6.23371 6.33552 6.39796 6.44589 6.57158 6.62961 6.76007 6.81912 7.03473 7.80176 7.82380 8.34657 8.75681 9.23745 10.10060 10.25539 11.37905 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.033317 B = 0.002201 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.220688 B =12717.143454 C =13013.200560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.607 5.607 3 C 0.129 3.871 4 C -0.088 4.088 5 C -0.135 4.135 6 C -0.120 4.120 7 C 0.171 3.829 8 N -0.739 5.739 9 C -0.329 4.329 10 H 0.063 0.937 11 C -0.047 4.047 12 N -0.944 5.944 13 Si 1.080 2.920 14 H -0.285 1.285 15 H -0.296 1.296 16 H -0.296 1.296 17 C 0.520 3.480 18 O -0.512 6.512 19 C -0.123 4.123 20 H 0.107 0.893 21 C -0.107 4.107 22 C -0.035 4.035 23 C 0.181 3.819 24 N -0.292 5.292 25 N -0.301 5.301 26 C 0.154 3.846 27 N -0.473 5.473 28 C 0.115 3.885 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.039 0.961 39 H 0.053 0.947 40 H 0.020 0.980 41 H 0.017 0.983 42 H 0.368 0.632 43 H 0.253 0.747 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.220 0.780 49 H 0.098 0.902 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 -14.805 15.800 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C 0.006 3.994 4 C -0.089 4.089 5 C -0.192 4.192 6 C -0.178 4.178 7 C 0.043 3.957 8 N -0.385 5.385 9 C -0.460 4.460 10 H 0.081 0.919 11 C -0.244 4.244 12 N -0.590 5.590 13 Si 0.911 3.089 14 H -0.211 1.211 15 H -0.223 1.223 16 H -0.223 1.223 17 C 0.305 3.695 18 O -0.386 6.386 19 C -0.145 4.145 20 H 0.125 0.875 21 C -0.146 4.146 22 C -0.075 4.075 23 C -0.087 4.087 24 N -0.132 5.132 25 N -0.140 5.140 26 C -0.134 4.134 27 N -0.164 5.164 28 C -0.009 4.009 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.202 0.798 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.125 0.875 48 H 0.236 0.764 49 H 0.116 0.884 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.753 -15.054 14.895 23.316 hybrid contribution -0.471 0.435 1.072 1.249 sum -10.225 -14.619 15.967 23.942 Atomic orbital electron populations 1.22082 0.79730 1.03107 1.02475 1.47802 1.06806 1.06248 1.73137 1.21632 0.97265 0.83199 0.97264 1.21143 0.96415 0.97066 0.94269 1.21879 0.95809 1.00035 1.01516 1.21715 0.99430 0.96191 1.00416 1.20511 0.95688 0.91053 0.88461 1.42377 1.69111 1.26055 1.00981 1.20030 1.32006 0.99510 0.94463 0.91882 1.25758 1.02159 1.05337 0.91148 1.70888 1.41022 1.15191 1.31934 0.83239 0.75382 0.74358 0.75931 1.21055 1.22301 1.22329 1.19959 0.87841 0.84333 0.77330 1.90787 1.13842 1.86565 1.47445 1.21690 1.01094 0.95262 0.96479 0.87489 1.21574 0.97098 0.90757 1.05138 1.20303 0.96596 0.99734 0.90852 1.24907 1.02287 0.84238 0.97271 1.74104 1.10495 1.23115 1.05452 1.74504 1.19598 1.10046 1.09812 1.26295 0.97284 0.93782 0.96000 1.46155 1.38560 1.11160 1.20567 1.21988 1.01018 0.80463 0.97389 0.91711 0.91760 0.90185 0.89761 0.90346 0.91950 0.93491 0.93155 0.92331 0.94191 0.92786 0.96258 0.96488 0.79761 0.93550 0.88477 0.89980 0.88374 0.87539 0.76405 0.88362 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 8.86 59.85 0.53 0.90 16 2 N -0.61 -5.28 2.40 -181.57 -0.44 -5.71 16 3 C 0.13 1.47 4.62 -4.04 -0.02 1.45 16 4 C -0.09 -1.32 0.60 -154.51 -0.09 -1.41 16 5 C -0.14 -1.92 7.71 37.16 0.29 -1.63 16 6 C -0.12 -1.99 6.88 37.16 0.26 -1.74 16 7 C 0.17 3.36 5.15 -4.04 -0.02 3.34 16 8 N -0.74 -18.35 5.00 -59.91 -0.30 -18.65 16 9 C -0.33 -9.29 9.99 -15.06 -0.15 -9.44 16 10 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 11 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 16 12 N -0.94 -29.22 13.70 55.49 0.76 -28.46 16 13 Si 1.08 25.96 29.92 -169.99 -5.09 20.88 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.30 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.52 4.93 5.47 -10.99 -0.06 4.87 16 18 O -0.51 -6.89 13.33 5.56 0.07 -6.81 16 19 C -0.12 -0.78 1.69 -91.54 -0.15 -0.93 16 20 H 0.11 0.57 7.35 -51.93 -0.38 0.19 16 21 C -0.11 -0.73 4.60 -26.42 -0.12 -0.86 16 22 C -0.04 -0.23 6.34 -27.60 -0.17 -0.40 16 23 C 0.18 1.67 7.75 -155.30 -1.20 0.46 16 24 N -0.29 -3.63 12.21 32.76 0.40 -3.23 16 25 N -0.30 -3.57 12.23 29.59 0.36 -3.21 16 26 C 0.15 1.19 12.83 -90.41 -1.16 0.03 16 27 N -0.47 -3.43 3.11 -115.52 -0.36 -3.79 16 28 C 0.11 0.57 6.05 -4.01 -0.02 0.54 16 29 H 0.06 0.38 6.45 -51.93 -0.34 0.04 16 30 H 0.06 0.20 4.58 -51.93 -0.24 -0.04 16 31 H 0.08 0.37 7.85 -51.93 -0.41 -0.04 16 32 H 0.08 1.07 7.52 -51.93 -0.39 0.68 16 33 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 34 H 0.06 1.08 6.86 -51.93 -0.36 0.73 16 35 H 0.05 0.55 5.41 -51.93 -0.28 0.27 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.06 7.61 -51.93 -0.40 0.66 16 38 H 0.04 0.60 6.04 -51.93 -0.31 0.28 16 39 H 0.05 1.03 6.86 -51.93 -0.36 0.68 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.37 9.34 4.19 -40.82 -0.17 9.17 16 43 H 0.25 7.72 6.77 -40.82 -0.28 7.44 16 44 H 0.10 0.72 8.02 -51.93 -0.42 0.31 16 45 H 0.08 0.64 8.12 -51.93 -0.42 0.21 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.22 0.70 8.06 -52.48 -0.42 0.28 16 49 H 0.10 0.50 8.12 -51.93 -0.42 0.07 16 50 H 0.11 0.29 6.03 -51.93 -0.31 -0.03 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -37.12 379.48 -8.70 -45.81 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.63 Total: 3.72 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.21 Total: -6.27 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.43 Total: -63.05 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: 0.07 Total: -6.81 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.09 Total: 20.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.12 -8.70 -45.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282334839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.545 kcal (2) G-P(sol) polarization free energy of solvation -37.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds