Wall clock time and date at job start Tue Mar 31 2020 18:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99446 * 2 1 4 4 C 1.52999 * 109.46957 * 269.99910 * 3 2 1 5 5 C 1.52996 * 109.47475 * 60.00303 * 4 3 2 6 6 C 1.53003 * 109.47321 * 300.00229 * 4 3 2 7 7 C 1.53002 * 109.47184 * 180.02562 * 4 3 2 8 8 N 1.46494 * 109.47235 * 180.02562 * 7 4 3 9 9 C 1.36946 * 120.00173 * 179.97438 * 8 7 4 10 10 H 1.07997 * 119.99347 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99784 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00335 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99539 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47243 * 179.97438 * 13 11 9 15 15 H 1.48506 * 109.47356 * 59.99881 * 13 11 9 16 16 H 1.48503 * 109.47285 * 299.99868 * 13 11 9 17 17 C 1.34772 * 120.00370 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00018 * 173.42041 * 17 2 1 19 19 C 1.50698 * 119.99896 * 353.41925 * 17 2 1 20 20 H 1.08998 * 109.45188 * 46.43247 * 19 17 2 21 21 C 1.53138 * 109.45493 * 166.38827 * 19 17 2 22 22 C 1.53462 * 109.31141 * 189.46292 * 21 19 17 23 23 C 1.50800 * 108.13238 * 311.29287 * 22 21 19 24 24 N 1.29839 * 128.52164 * 195.88909 * 23 22 21 25 25 N 1.28914 * 109.47558 * 179.90659 * 24 23 22 26 26 C 1.30830 * 109.74417 * 0.02562 * 25 24 23 27 27 N 1.34697 * 107.07056 * 0.03585 * 26 25 24 28 28 C 1.46263 * 128.84826 * 179.85209 * 27 26 25 29 29 H 1.08996 * 109.47350 * 94.00178 * 1 2 3 30 30 H 1.09005 * 109.46849 * 213.99933 * 1 2 3 31 31 H 1.09001 * 109.47157 * 333.99906 * 1 2 3 32 32 H 1.08999 * 109.46707 * 150.00240 * 3 2 1 33 33 H 1.08991 * 109.47353 * 29.99748 * 3 2 1 34 34 H 1.08997 * 109.47580 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46794 * 300.00136 * 5 4 3 36 36 H 1.09006 * 109.46908 * 59.99593 * 5 4 3 37 37 H 1.08999 * 109.47312 * 300.00264 * 6 4 3 38 38 H 1.09004 * 109.47015 * 59.99824 * 6 4 3 39 39 H 1.08997 * 109.47349 * 179.97438 * 6 4 3 40 40 H 1.09000 * 109.47501 * 59.99751 * 7 4 3 41 41 H 1.09006 * 109.46677 * 300.00086 * 7 4 3 42 42 H 0.96998 * 120.00300 * 359.97438 * 8 7 4 43 43 H 0.96996 * 120.00203 * 0.02562 * 12 11 9 44 44 H 1.09001 * 109.49715 * 309.41810 * 21 19 17 45 45 H 1.09002 * 109.49966 * 69.48088 * 21 19 17 46 46 H 1.08999 * 109.72619 * 70.94788 * 22 21 19 47 47 H 1.08993 * 109.73246 * 191.58439 * 22 21 19 48 48 H 1.08005 * 126.46813 * 180.02562 * 26 25 24 49 49 H 1.08999 * 109.59045 * 77.35854 * 28 27 26 50 50 H 1.08997 * 109.59411 * 316.90712 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 1.1156 1.8934 -2.1638 6 6 3.2793 0.6442 -2.1638 7 6 3.2178 3.0353 -1.4426 8 7 3.4614 3.4585 -2.8237 9 6 4.1344 4.6246 -3.0740 10 1 4.4851 5.2324 -2.2531 11 6 4.3656 5.0252 -4.3828 12 7 3.9385 4.2842 -5.3832 13 14 5.2830 6.6162 -4.7241 14 1 5.3990 6.8158 -6.1910 15 1 6.6403 6.5432 -4.1261 16 1 4.5395 7.7544 -4.1266 17 6 2.1390 -1.1671 -0.0005 18 8 3.3457 -1.1704 -0.1209 19 6 1.3930 -2.4680 0.1485 20 1 0.5279 -2.4684 -0.5147 21 6 2.3182 -3.6315 -0.2194 22 6 1.4986 -4.9266 -0.2970 23 6 0.6530 -5.0222 0.9480 24 7 0.0348 -6.0582 1.4280 25 7 -0.5786 -5.7281 2.5128 26 6 -0.3747 -4.4612 2.7679 27 7 0.4093 -3.9809 1.7835 28 6 0.9231 -2.6239 1.5995 29 1 -0.3634 -0.0717 -1.0251 30 1 -0.3633 -0.8520 0.5747 31 1 -0.3633 0.9237 0.4505 32 1 3.1498 1.1385 0.5138 33 1 1.6083 2.0284 0.5137 34 1 1.2972 2.2076 -3.1916 35 1 0.5706 0.9493 -2.1637 36 1 0.5264 2.6530 -1.6499 37 1 4.2317 0.5139 -1.6500 38 1 2.7344 -0.2998 -2.1637 39 1 3.4606 0.9586 -3.1916 40 1 4.1703 2.9047 -0.9288 41 1 2.6290 3.7951 -0.9286 42 1 3.1460 2.9127 -3.5610 43 1 3.4619 3.4582 -5.2059 44 1 2.7819 -3.4359 -1.1863 45 1 3.0922 -3.7353 0.5410 46 1 0.8561 -4.9033 -1.1772 47 1 2.1694 -5.7838 -0.3538 48 1 -0.7620 -3.9053 3.6090 49 1 1.7617 -2.4558 2.2752 50 1 0.1330 -1.9025 1.8075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282334839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:31 Heat of formation + Delta-G solvation = 37.623208 kcal Electronic energy + Delta-G solvation = -30064.110405 eV Core-core repulsion = 26127.413981 eV Total energy + Delta-G solvation = -3936.696424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.33199 -41.63617 -39.17567 -37.72651 -36.66645 -35.14659 -34.65040 -32.45903 -31.77492 -30.24421 -28.90305 -28.21407 -27.18781 -26.95204 -25.73106 -24.85862 -23.90259 -23.31017 -21.25710 -20.12095 -19.76785 -19.37376 -18.38266 -18.28094 -17.41554 -17.27146 -16.93035 -16.46795 -16.05598 -15.74543 -15.69307 -15.37749 -15.31827 -15.13391 -14.99870 -14.62848 -14.30195 -14.13721 -13.88166 -13.80839 -13.32286 -13.16641 -13.02397 -12.86034 -12.68380 -12.66516 -12.55480 -12.46058 -12.28818 -12.06601 -12.06072 -11.87413 -11.70935 -11.64350 -11.38765 -11.27343 -11.13026 -10.93343 -10.83407 -10.23675 -9.64515 -9.09148 -8.40467 -5.32949 0.84412 1.28773 1.56856 1.60027 1.67185 1.83336 1.83518 1.94823 2.71041 3.08540 3.22292 3.33265 3.39035 3.45663 3.72729 3.75833 3.84810 3.87344 3.96733 4.00663 4.01612 4.09289 4.23433 4.35682 4.40759 4.44329 4.47827 4.55389 4.61241 4.69535 4.72170 4.78463 4.82769 4.84524 4.91260 4.93429 4.97078 5.04979 5.08328 5.08932 5.16965 5.18486 5.37827 5.44986 5.50775 5.57734 5.88993 6.34336 6.48574 7.09290 7.10919 7.68898 8.01575 8.12475 9.11339 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.033317 B = 0.002201 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.220688 B =12717.143454 C =13013.200560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.603 5.603 3 C 0.138 3.862 4 C -0.078 4.078 5 C -0.127 4.127 6 C -0.106 4.106 7 C 0.167 3.833 8 N -0.751 5.751 9 C -0.332 4.332 10 H 0.065 0.935 11 C -0.107 4.107 12 N -0.975 5.975 13 Si 1.128 2.872 14 H -0.293 1.293 15 H -0.280 1.280 16 H -0.275 1.275 17 C 0.519 3.481 18 O -0.558 6.558 19 C -0.114 4.114 20 H 0.127 0.873 21 C -0.103 4.103 22 C -0.029 4.029 23 C 0.178 3.822 24 N -0.338 5.338 25 N -0.352 5.352 26 C 0.172 3.828 27 N -0.470 5.470 28 C 0.118 3.882 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.023 0.977 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.056 0.944 39 H 0.018 0.982 40 H 0.007 0.993 41 H 0.027 0.973 42 H 0.362 0.638 43 H 0.242 0.758 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.109 0.891 48 H 0.262 0.738 49 H 0.100 0.900 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 -13.984 17.732 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.334 5.334 3 C 0.015 3.985 4 C -0.080 4.080 5 C -0.184 4.184 6 C -0.163 4.163 7 C 0.040 3.960 8 N -0.396 5.396 9 C -0.464 4.464 10 H 0.083 0.917 11 C -0.298 4.298 12 N -0.624 5.624 13 Si 0.953 3.047 14 H -0.219 1.219 15 H -0.207 1.207 16 H -0.201 1.201 17 C 0.306 3.694 18 O -0.436 6.436 19 C -0.136 4.136 20 H 0.145 0.855 21 C -0.141 4.141 22 C -0.069 4.069 23 C -0.092 4.092 24 N -0.177 5.177 25 N -0.190 5.190 26 C -0.117 4.117 27 N -0.161 5.161 28 C -0.004 4.004 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.042 0.958 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.025 0.975 41 H 0.045 0.955 42 H 0.195 0.805 43 H 0.052 0.948 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.131 0.869 47 H 0.127 0.873 48 H 0.278 0.722 49 H 0.118 0.882 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.641 -14.253 16.884 24.975 hybrid contribution 0.119 0.163 0.539 0.576 sum -11.522 -14.090 17.424 25.197 Atomic orbital electron populations 1.22376 0.77070 1.05425 1.03297 1.47832 1.08283 1.04923 1.72378 1.21383 0.97827 0.85226 0.94101 1.21053 0.95892 0.93941 0.97065 1.21807 0.95522 1.02005 0.99049 1.21563 0.99104 0.97538 0.98127 1.20696 0.95883 0.93766 0.85647 1.42588 1.68795 1.25261 1.02999 1.20406 1.31129 1.00285 0.94558 0.91690 1.27212 1.03137 1.08078 0.91363 1.70997 1.42947 1.15601 1.32805 0.82622 0.75169 0.71513 0.75408 1.21942 1.20662 1.20091 1.20459 0.87394 0.85324 0.76185 1.90785 1.16038 1.87251 1.49490 1.21617 1.01012 0.92882 0.98077 0.85526 1.21484 0.97012 0.91314 1.04303 1.20345 0.96483 0.99560 0.90468 1.25234 1.01802 0.84279 0.97861 1.74002 1.12193 1.25008 1.06531 1.74402 1.21562 1.12506 1.10570 1.27075 0.95548 0.92840 0.96219 1.46257 1.38212 1.11525 1.20060 1.22144 1.02242 0.79858 0.96198 0.91674 0.88827 0.88558 0.91302 0.87581 0.95784 0.90437 0.91759 0.94408 0.92459 0.96249 0.97491 0.95541 0.80462 0.94806 0.89306 0.91253 0.86932 0.87314 0.72205 0.88168 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 8.86 127.77 1.13 1.47 16 2 N -0.60 -8.45 2.40 -846.77 -2.03 -10.48 16 3 C 0.14 2.82 4.62 86.38 0.40 3.22 16 4 C -0.08 -2.28 0.60 -52.18 -0.03 -2.31 16 5 C -0.13 -3.38 7.71 71.98 0.55 -2.83 16 6 C -0.11 -3.59 6.88 71.98 0.49 -3.09 16 7 C 0.17 6.57 5.15 86.38 0.44 7.01 16 8 N -0.75 -38.12 5.00 -343.45 -1.72 -39.84 16 9 C -0.33 -18.94 9.99 84.03 0.84 -18.10 16 10 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 11 C -0.11 -6.29 5.50 84.86 0.47 -5.82 16 12 N -0.98 -61.78 13.70 21.65 0.30 -61.48 16 13 Si 1.13 52.32 29.92 68.60 2.05 54.37 16 14 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 C 0.52 8.63 5.47 87.66 0.48 9.11 16 18 O -0.56 -14.68 13.33 -3.02 -0.04 -14.72 16 19 C -0.11 -1.10 1.69 -11.39 -0.02 -1.12 16 20 H 0.13 0.80 7.35 -2.39 -0.02 0.78 16 21 C -0.10 -1.27 4.60 30.80 0.14 -1.13 16 22 C -0.03 -0.34 6.34 30.03 0.19 -0.15 16 23 C 0.18 3.01 7.75 138.14 1.07 4.09 16 24 N -0.34 -8.26 12.21 -50.28 -0.61 -8.87 16 25 N -0.35 -8.03 12.23 -60.31 -0.74 -8.76 16 26 C 0.17 2.16 12.83 180.28 2.31 4.48 16 27 N -0.47 -5.45 3.11 -519.39 -1.62 -7.07 16 28 C 0.12 0.71 6.05 86.53 0.52 1.23 16 29 H 0.06 0.43 6.45 -2.39 -0.02 0.42 16 30 H 0.09 0.01 4.58 -2.38 -0.01 0.00 16 31 H 0.10 0.33 7.85 -2.39 -0.02 0.32 16 32 H 0.07 1.67 7.52 -2.39 -0.02 1.65 16 33 H 0.11 1.63 7.86 -2.39 -0.02 1.61 16 34 H 0.02 0.82 6.86 -2.39 -0.02 0.80 16 35 H 0.08 1.58 5.41 -2.38 -0.01 1.56 16 36 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.04 1.41 7.61 -2.39 -0.02 1.39 16 38 H 0.06 1.70 6.04 -2.38 -0.01 1.69 16 39 H 0.02 0.76 6.86 -2.39 -0.02 0.74 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.36 19.14 4.19 -92.71 -0.39 18.75 16 43 H 0.24 15.31 6.77 -92.71 -0.63 14.68 16 44 H 0.09 1.27 8.02 -2.39 -0.02 1.25 16 45 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 46 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.26 0.53 8.06 -2.91 -0.02 0.50 16 49 H 0.10 0.66 8.12 -2.39 -0.02 0.64 16 50 H 0.14 -0.07 6.03 -2.39 -0.01 -0.08 16 Total: -1.00 -85.50 379.48 5.30 -80.21 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.71 Total: 20.60 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 9.00 Total: -3.96 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -6.42 Total: -136.50 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.04 Total: -14.72 kcal Atomic # 14 Polarization: 52.32 SS G_CDS: 2.05 Total: 54.37 kcal Total: -85.50 5.30 -80.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282334839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.829 kcal (2) G-P(sol) polarization free energy of solvation -85.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds