Wall clock time and date at job start Tue Mar 31 2020 18:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47055 * 2 1 4 4 C 1.52996 * 109.47488 * 239.99850 * 2 1 3 5 5 N 1.46509 * 109.46918 * 119.99614 * 2 1 3 6 6 C 1.34587 * 125.74411 * 75.00177 * 5 2 1 7 7 N 1.30873 * 107.62097 * 179.97438 * 6 5 2 8 8 C 1.34551 * 107.26894 * 0.02562 * 7 6 5 9 9 C 1.47869 * 126.04847 * 179.97438 * 8 7 6 10 10 O 1.21552 * 120.00206 * 186.39731 * 9 8 7 11 11 N 1.34782 * 119.99633 * 6.66623 * 9 8 7 12 12 C 1.46922 * 120.63070 * 354.02077 * 11 9 8 13 13 C 1.53625 * 108.54353 * 126.36757 * 12 11 9 14 14 C 1.53046 * 109.24260 * 54.85187 * 13 12 11 15 15 C 1.53037 * 109.53885 * 298.51191 * 14 13 12 16 16 H 1.08999 * 109.50121 * 301.41685 * 15 14 13 17 17 C 1.52995 * 109.52454 * 181.32983 * 15 14 13 18 18 N 1.46507 * 109.47400 * 175.14861 * 17 15 14 19 19 C 1.36938 * 120.00055 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00105 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99886 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00202 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99840 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47200 * 90.00241 * 23 21 19 25 25 H 1.48501 * 109.47217 * 209.99941 * 23 21 19 26 26 H 1.48497 * 109.47180 * 330.00014 * 23 21 19 27 27 C 1.46925 * 120.62612 * 174.29795 * 11 9 8 28 28 N 1.28846 * 125.74665 * 255.24923 * 5 2 1 29 29 H 1.09000 * 109.47469 * 299.99935 * 1 2 3 30 30 H 1.09000 * 109.46795 * 60.00138 * 1 2 3 31 31 H 1.09005 * 109.47196 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47442 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47037 * 300.00138 * 3 2 1 34 34 H 1.09000 * 109.46929 * 59.99734 * 3 2 1 35 35 H 1.09005 * 109.47043 * 300.00266 * 4 2 1 36 36 H 1.08999 * 109.46746 * 59.99775 * 4 2 1 37 37 H 1.08993 * 109.47342 * 180.02562 * 4 2 1 38 38 H 1.07993 * 126.19126 * 359.97438 * 6 5 2 39 39 H 1.08999 * 109.58480 * 246.19318 * 12 11 9 40 40 H 1.08993 * 109.58670 * 6.62742 * 12 11 9 41 41 H 1.08999 * 109.63225 * 294.86735 * 13 12 11 42 42 H 1.08992 * 109.43559 * 174.72173 * 13 12 11 43 43 H 1.09000 * 109.46026 * 178.49412 * 14 13 12 44 44 H 1.08994 * 109.44564 * 58.52812 * 14 13 12 45 45 H 1.09004 * 109.47410 * 295.14819 * 17 15 14 46 46 H 1.09001 * 109.47278 * 55.14665 * 17 15 14 47 47 H 0.97003 * 119.99367 * 359.97438 * 18 17 15 48 48 H 0.97000 * 120.00049 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.59060 * 353.37201 * 27 11 9 50 50 H 1.08993 * 109.58685 * 113.66179 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1963 6 6 2.0138 -2.0221 1.3924 7 7 2.5282 -2.2503 2.5739 8 6 2.8496 -1.0573 3.1068 9 6 3.4603 -0.8336 4.4348 10 8 3.5990 0.2977 4.8572 11 7 3.8679 -1.8839 5.1746 12 6 3.5953 -3.2594 4.7359 13 6 4.9206 -4.0359 4.7105 14 6 5.5905 -3.9353 6.0829 15 6 5.8976 -2.4692 6.3964 16 1 6.5468 -2.0599 5.6224 17 6 6.5970 -2.3721 7.7536 18 7 6.9939 -0.9836 8.0003 19 6 7.6414 -0.6524 9.1607 20 1 7.8590 -1.4147 9.8941 21 6 8.0179 0.6631 9.3942 22 7 8.6397 0.9816 10.5096 23 14 7.6420 1.9814 8.1252 24 1 6.3098 2.5739 8.4067 25 1 8.6793 3.0420 8.1911 26 1 7.6381 1.3764 6.7691 27 6 4.5881 -1.6750 6.4381 28 7 2.5202 -0.1252 2.2396 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2074 -2.1391 37 1 3.1300 -0.7216 -1.2489 38 1 1.6514 -2.7674 0.7000 39 1 2.9037 -3.7345 5.4316 40 1 3.1597 -3.2447 3.7369 41 1 5.5791 -3.6118 3.9525 42 1 4.7235 -5.0822 4.4778 43 1 6.5183 -4.5073 6.0770 44 1 4.9212 -4.3368 6.8437 45 1 5.9150 -2.6999 8.5382 46 1 7.4821 -3.0083 7.7526 47 1 6.7987 -0.2991 7.3414 48 1 8.9025 1.9009 10.6729 49 1 4.8078 -0.6147 6.5625 50 1 3.9747 -2.0212 7.2698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317158658.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:45 Heat of formation + Delta-G solvation = 79.576453 kcal Electronic energy + Delta-G solvation = -29772.251653 eV Core-core repulsion = 25837.374459 eV Total energy + Delta-G solvation = -3934.877194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.83901 -39.95430 -37.88596 -37.43939 -35.03209 -33.28807 -32.53874 -31.64744 -31.28519 -30.02928 -28.21273 -28.07988 -26.42624 -25.54338 -23.88377 -23.25911 -22.72224 -21.13734 -20.58738 -20.33241 -19.27179 -17.68441 -17.34109 -16.89598 -16.74889 -16.21849 -15.16906 -15.10250 -14.79674 -14.64135 -14.54657 -14.43417 -14.06950 -13.83709 -13.56590 -13.17502 -13.13411 -13.05022 -12.86990 -12.73501 -12.52308 -12.47221 -12.35706 -12.31184 -11.97673 -11.72623 -11.45800 -11.33931 -11.05869 -10.82743 -10.73925 -10.68137 -10.43564 -10.19318 -10.16507 -10.00060 -9.79829 -9.55951 -9.44628 -8.79272 -8.46598 -7.12382 -5.66970 -3.01969 1.23620 1.76134 1.83385 2.89855 3.34114 3.51779 3.56692 3.60473 3.70258 3.80856 3.97996 4.08994 4.30008 4.48040 4.71546 4.73046 4.84754 4.89980 4.91741 4.97457 5.06195 5.06922 5.14550 5.16423 5.24629 5.26657 5.43741 5.45962 5.49092 5.64091 5.65820 5.70593 5.81468 5.85783 5.95383 5.97530 6.02111 6.11380 6.16842 6.17672 6.43003 6.44257 6.46822 6.74496 6.82029 6.88405 7.42060 7.76605 8.09191 8.22048 8.52237 9.31670 10.04741 10.24344 11.51356 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.002909 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.019362 B = 9623.084314 C =11047.053919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 C -0.150 4.150 4 C -0.160 4.160 5 N -0.292 5.292 6 C 0.188 3.812 7 N -0.481 5.481 8 C 0.152 3.848 9 C 0.608 3.392 10 O -0.517 6.517 11 N -0.589 5.589 12 C 0.059 3.941 13 C -0.128 4.128 14 C -0.113 4.113 15 C -0.110 4.110 16 H 0.073 0.927 17 C 0.165 3.835 18 N -0.757 5.757 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.936 5.936 23 Si 0.881 3.119 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.120 3.880 28 N -0.245 5.245 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.222 0.778 39 H 0.061 0.939 40 H 0.153 0.847 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.029 0.971 46 H 0.031 0.969 47 H 0.362 0.638 48 H 0.259 0.741 49 H 0.095 0.905 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.650 -10.049 -29.290 36.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.084 3.916 3 C -0.208 4.208 4 C -0.218 4.218 5 N -0.088 5.088 6 C -0.106 4.106 7 N -0.207 5.207 8 C -0.128 4.128 9 C 0.391 3.609 10 O -0.389 6.389 11 N -0.322 5.322 12 C -0.063 4.063 13 C -0.166 4.166 14 C -0.151 4.151 15 C -0.130 4.130 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.403 5.403 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.584 5.584 23 Si 0.711 3.289 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.001 4.001 28 N -0.083 5.083 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.238 0.762 39 H 0.080 0.920 40 H 0.169 0.831 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.114 0.886 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.323 -9.050 -28.553 35.644 hybrid contribution -0.271 0.734 -1.041 1.302 sum -19.594 -8.315 -29.593 36.453 Atomic orbital electron populations 1.22271 0.91648 1.03627 1.04260 1.21198 0.95351 0.94449 0.80567 1.22012 1.02725 0.92153 1.03904 1.22265 1.02803 1.01099 0.95655 1.47777 1.41469 1.06154 1.13397 1.26486 1.01154 0.86579 0.96419 1.70750 1.17829 1.25075 1.07033 1.23827 1.05631 0.85359 0.97982 1.16406 0.78495 0.84870 0.81164 1.90863 1.55183 1.22299 1.70599 1.47867 1.55482 1.06206 1.22609 1.23125 0.97233 0.80175 1.05788 1.21928 0.96948 0.99970 0.97795 1.21540 1.00788 0.96015 0.96783 1.21740 0.96116 0.95397 0.99736 0.90902 1.20622 0.96034 0.87442 0.92150 1.42791 1.71530 1.04164 1.21849 1.19047 1.28946 0.94419 0.94814 0.89200 1.24645 1.00459 0.96923 0.97027 1.69706 1.45422 1.18225 1.25036 0.86600 0.77917 0.82523 0.81873 1.20795 1.21774 1.20269 1.21796 0.92077 1.02770 0.83499 1.74342 1.13328 1.25283 0.95348 0.91156 0.89516 0.91324 0.91167 0.90234 0.90414 0.91107 0.89242 0.91056 0.76212 0.92023 0.83140 0.92000 0.91061 0.91562 0.91640 0.95271 0.95157 0.80516 0.93143 0.88645 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 8.72 37.16 0.32 -0.24 16 2 C 0.17 0.86 1.23 -131.82 -0.16 0.70 16 3 C -0.15 -0.93 8.05 37.16 0.30 -0.63 16 4 C -0.16 -0.40 8.28 37.16 0.31 -0.10 16 5 N -0.29 -2.59 3.16 -49.83 -0.16 -2.75 16 6 C 0.19 1.44 11.71 -90.48 -1.06 0.38 16 7 N -0.48 -5.43 7.71 -12.36 -0.10 -5.52 16 8 C 0.15 2.24 7.73 -156.35 -1.21 1.03 16 9 C 0.61 10.81 7.70 -12.32 -0.09 10.71 16 10 O -0.52 -11.22 16.52 5.32 0.09 -11.13 16 11 N -0.59 -9.33 2.97 -173.61 -0.51 -9.84 16 12 C 0.06 0.73 6.36 -3.49 -0.02 0.70 16 13 C -0.13 -1.45 6.10 -26.38 -0.16 -1.61 16 14 C -0.11 -1.46 5.17 -26.69 -0.14 -1.60 16 15 C -0.11 -1.84 2.37 -90.50 -0.21 -2.05 16 16 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 17 C 0.17 3.34 5.66 -4.04 -0.02 3.31 16 18 N -0.76 -19.21 5.18 -59.91 -0.31 -19.52 16 19 C -0.24 -7.21 10.47 -15.06 -0.16 -7.37 16 20 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 22 N -0.94 -30.63 13.97 55.49 0.78 -29.85 16 23 Si 0.88 24.01 27.74 -169.99 -4.71 19.30 16 24 H -0.28 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.29 -7.92 7.11 56.52 0.40 -7.51 16 26 H -0.28 -7.30 6.52 56.52 0.37 -6.93 16 27 C 0.12 2.10 5.50 -3.71 -0.02 2.08 16 28 N -0.25 -3.36 11.10 32.07 0.36 -3.00 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.64 8.02 -51.93 -0.42 0.22 16 35 H 0.07 0.07 7.34 -51.93 -0.38 -0.31 16 36 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.22 0.56 7.53 -52.49 -0.40 0.17 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.15 1.77 3.61 -81.25 -0.29 1.48 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.36 9.25 4.75 -40.82 -0.19 9.06 16 48 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 49 H 0.10 1.98 6.24 -51.93 -0.32 1.66 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -38.42 393.76 -9.43 -47.85 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -8.36 Total: 3.15 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.43 Total: 5.38 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: 0.05 Total: -70.49 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -4.71 Total: 19.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.42 -9.43 -47.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317158658.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.425 kcal (2) G-P(sol) polarization free energy of solvation -38.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds