Wall clock time and date at job start Tue Mar 31 2020 18:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47055 * 2 1 4 4 C 1.52996 * 109.47488 * 239.99850 * 2 1 3 5 5 N 1.46509 * 109.46918 * 119.99614 * 2 1 3 6 6 C 1.34587 * 125.74411 * 75.00177 * 5 2 1 7 7 N 1.30873 * 107.62097 * 179.97438 * 6 5 2 8 8 C 1.34551 * 107.26894 * 0.02562 * 7 6 5 9 9 C 1.47869 * 126.04847 * 179.97438 * 8 7 6 10 10 O 1.21552 * 120.00206 * 186.39731 * 9 8 7 11 11 N 1.34782 * 119.99633 * 6.66623 * 9 8 7 12 12 C 1.46922 * 120.63070 * 354.02077 * 11 9 8 13 13 C 1.53625 * 108.54353 * 126.36757 * 12 11 9 14 14 C 1.53046 * 109.24260 * 54.85187 * 13 12 11 15 15 C 1.53037 * 109.53885 * 298.51191 * 14 13 12 16 16 H 1.08999 * 109.50121 * 301.41685 * 15 14 13 17 17 C 1.52995 * 109.52454 * 181.32983 * 15 14 13 18 18 N 1.46507 * 109.47400 * 175.14861 * 17 15 14 19 19 C 1.36938 * 120.00055 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00105 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99886 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00202 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99840 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47200 * 90.00241 * 23 21 19 25 25 H 1.48501 * 109.47217 * 209.99941 * 23 21 19 26 26 H 1.48497 * 109.47180 * 330.00014 * 23 21 19 27 27 C 1.46925 * 120.62612 * 174.29795 * 11 9 8 28 28 N 1.28846 * 125.74665 * 255.24923 * 5 2 1 29 29 H 1.09000 * 109.47469 * 299.99935 * 1 2 3 30 30 H 1.09000 * 109.46795 * 60.00138 * 1 2 3 31 31 H 1.09005 * 109.47196 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47442 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47037 * 300.00138 * 3 2 1 34 34 H 1.09000 * 109.46929 * 59.99734 * 3 2 1 35 35 H 1.09005 * 109.47043 * 300.00266 * 4 2 1 36 36 H 1.08999 * 109.46746 * 59.99775 * 4 2 1 37 37 H 1.08993 * 109.47342 * 180.02562 * 4 2 1 38 38 H 1.07993 * 126.19126 * 359.97438 * 6 5 2 39 39 H 1.08999 * 109.58480 * 246.19318 * 12 11 9 40 40 H 1.08993 * 109.58670 * 6.62742 * 12 11 9 41 41 H 1.08999 * 109.63225 * 294.86735 * 13 12 11 42 42 H 1.08992 * 109.43559 * 174.72173 * 13 12 11 43 43 H 1.09000 * 109.46026 * 178.49412 * 14 13 12 44 44 H 1.08994 * 109.44564 * 58.52812 * 14 13 12 45 45 H 1.09004 * 109.47410 * 295.14819 * 17 15 14 46 46 H 1.09001 * 109.47278 * 55.14665 * 17 15 14 47 47 H 0.97003 * 119.99367 * 359.97438 * 18 17 15 48 48 H 0.97000 * 120.00049 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.59060 * 353.37201 * 27 11 9 50 50 H 1.08993 * 109.58685 * 113.66179 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1963 6 6 2.0138 -2.0221 1.3924 7 7 2.5282 -2.2503 2.5739 8 6 2.8496 -1.0573 3.1068 9 6 3.4603 -0.8336 4.4348 10 8 3.5990 0.2977 4.8572 11 7 3.8679 -1.8839 5.1746 12 6 3.5953 -3.2594 4.7359 13 6 4.9206 -4.0359 4.7105 14 6 5.5905 -3.9353 6.0829 15 6 5.8976 -2.4692 6.3964 16 1 6.5468 -2.0599 5.6224 17 6 6.5970 -2.3721 7.7536 18 7 6.9939 -0.9836 8.0003 19 6 7.6414 -0.6524 9.1607 20 1 7.8590 -1.4147 9.8941 21 6 8.0179 0.6631 9.3942 22 7 8.6397 0.9816 10.5096 23 14 7.6420 1.9814 8.1252 24 1 6.3098 2.5739 8.4067 25 1 8.6793 3.0420 8.1911 26 1 7.6381 1.3764 6.7691 27 6 4.5881 -1.6750 6.4381 28 7 2.5202 -0.1252 2.2396 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2074 -2.1391 37 1 3.1300 -0.7216 -1.2489 38 1 1.6514 -2.7674 0.7000 39 1 2.9037 -3.7345 5.4316 40 1 3.1597 -3.2447 3.7369 41 1 5.5791 -3.6118 3.9525 42 1 4.7235 -5.0822 4.4778 43 1 6.5183 -4.5073 6.0770 44 1 4.9212 -4.3368 6.8437 45 1 5.9150 -2.6999 8.5382 46 1 7.4821 -3.0083 7.7526 47 1 6.7987 -0.2991 7.3414 48 1 8.9025 1.9009 10.6729 49 1 4.8078 -0.6147 6.5625 50 1 3.9747 -2.0212 7.2698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317158658.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:44 Heat of formation + Delta-G solvation = 54.122093 kcal Electronic energy + Delta-G solvation = -29773.355437 eV Core-core repulsion = 25837.374459 eV Total energy + Delta-G solvation = -3935.980978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.63338 -41.21523 -38.94810 -38.25558 -36.78931 -34.67378 -33.65500 -33.24160 -32.23641 -31.61277 -28.55560 -28.40557 -27.81791 -26.94194 -24.89661 -24.50874 -23.97652 -22.61567 -21.70656 -21.14389 -20.39004 -19.69054 -18.33733 -17.80562 -17.66295 -17.25666 -16.69649 -16.26670 -16.18905 -15.76818 -15.62590 -15.34837 -15.03577 -14.99765 -14.88677 -14.45618 -14.31462 -14.12245 -13.86260 -13.69601 -13.37047 -13.31093 -13.28128 -13.18905 -12.97909 -12.78380 -12.64743 -12.41685 -12.23264 -12.18160 -11.99675 -11.94964 -11.91001 -11.70272 -11.51758 -11.48367 -11.40918 -11.04488 -10.63569 -10.51043 -9.72016 -9.33103 -8.08224 -5.39535 0.26678 1.03908 1.11636 1.30205 1.34832 1.38968 1.81417 2.16213 2.41051 2.92338 3.21295 3.23984 3.51137 3.64361 3.66417 3.76339 3.83522 3.84525 3.91103 4.01536 4.17326 4.33183 4.41977 4.52470 4.56703 4.58583 4.61844 4.68026 4.73601 4.76714 4.77924 4.79651 4.82431 4.93669 4.98360 5.01564 5.09543 5.10681 5.17837 5.20691 5.23712 5.28957 5.40369 5.49165 5.52887 5.72109 5.94576 6.17244 6.21826 6.79325 7.02599 7.06561 7.80218 7.96977 9.13417 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.002909 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.019362 B = 9623.084314 C =11047.053919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 C -0.151 4.151 4 C -0.155 4.155 5 N -0.286 5.286 6 C 0.207 3.793 7 N -0.490 5.490 8 C 0.125 3.875 9 C 0.597 3.403 10 O -0.575 6.575 11 N -0.584 5.584 12 C 0.054 3.946 13 C -0.119 4.119 14 C -0.107 4.107 15 C -0.097 4.097 16 H 0.057 0.943 17 C 0.161 3.839 18 N -0.763 5.763 19 C -0.228 4.228 20 H 0.067 0.933 21 C -0.055 4.055 22 N -0.978 5.978 23 Si 0.941 3.059 24 H -0.285 1.285 25 H -0.287 1.287 26 H -0.268 1.268 27 C 0.122 3.878 28 N -0.277 5.277 29 H 0.043 0.957 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.278 0.722 39 H 0.076 0.924 40 H 0.163 0.837 41 H 0.052 0.948 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.055 0.945 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.785 -12.924 -33.375 41.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.077 3.923 3 C -0.209 4.209 4 C -0.213 4.213 5 N -0.082 5.082 6 C -0.086 4.086 7 N -0.216 5.216 8 C -0.153 4.153 9 C 0.383 3.617 10 O -0.453 6.453 11 N -0.315 5.315 12 C -0.067 4.067 13 C -0.157 4.157 14 C -0.145 4.145 15 C -0.117 4.117 16 H 0.076 0.924 17 C 0.035 3.965 18 N -0.409 5.409 19 C -0.359 4.359 20 H 0.085 0.915 21 C -0.247 4.247 22 N -0.629 5.629 23 Si 0.770 3.230 24 H -0.212 1.212 25 H -0.213 1.213 26 H -0.193 1.193 27 C -0.001 4.001 28 N -0.117 5.117 29 H 0.062 0.938 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.294 0.706 39 H 0.094 0.906 40 H 0.179 0.821 41 H 0.071 0.929 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.193 0.807 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.482 -12.002 -32.690 40.917 hybrid contribution 0.305 1.548 0.147 1.584 sum -21.177 -10.454 -32.543 40.209 Atomic orbital electron populations 1.22290 0.89908 1.04883 1.04259 1.21676 0.96580 0.93752 0.80278 1.22029 1.01361 0.93549 1.03950 1.22309 1.01902 1.02529 0.94554 1.48167 1.40171 1.06931 1.12952 1.27484 0.98564 0.86842 0.95677 1.70572 1.18777 1.23692 1.08562 1.23216 1.07793 0.87022 0.97313 1.16921 0.78070 0.84376 0.82365 1.90808 1.57766 1.24466 1.72229 1.47966 1.54385 1.07504 1.21658 1.23451 0.98331 0.78087 1.06794 1.21903 0.95743 1.01802 0.96279 1.21542 1.02004 0.92702 0.98290 1.21602 0.94803 0.98291 0.96966 0.92428 1.20846 0.96582 0.84602 0.94451 1.42904 1.71091 1.06462 1.20429 1.19094 1.27610 0.93790 0.95419 0.91470 1.25302 1.01381 0.99084 0.98923 1.69836 1.47423 1.18676 1.26999 0.85626 0.77340 0.80046 0.80013 1.21202 1.21287 1.19331 1.21613 0.93029 1.00535 0.84909 1.74265 1.14167 1.26534 0.96740 0.93761 0.86921 0.89415 0.93271 0.87180 0.93355 0.88531 0.86884 0.92517 0.70629 0.90580 0.82084 0.92922 0.87397 0.90300 0.90268 0.94648 0.94539 0.80711 0.93237 0.92682 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.61 8.72 71.98 0.63 0.02 16 2 C 0.16 1.25 1.23 3.60 0.00 1.25 16 3 C -0.15 -1.79 8.05 71.98 0.58 -1.22 16 4 C -0.16 -0.14 8.28 71.98 0.60 0.46 16 5 N -0.29 -4.59 3.16 -311.58 -0.99 -5.58 16 6 C 0.21 2.46 11.71 180.30 2.11 4.57 16 7 N -0.49 -10.02 7.71 -193.03 -1.49 -11.51 16 8 C 0.12 3.71 7.73 137.13 1.06 4.77 16 9 C 0.60 22.20 7.70 86.79 0.67 22.87 16 10 O -0.58 -26.86 16.52 -3.88 -0.06 -26.92 16 11 N -0.58 -18.61 2.97 -821.45 -2.44 -21.05 16 12 C 0.05 1.21 6.36 86.51 0.55 1.76 16 13 C -0.12 -2.32 6.10 30.82 0.19 -2.13 16 14 C -0.11 -2.48 5.17 30.62 0.16 -2.32 16 15 C -0.10 -3.19 2.37 -10.72 -0.03 -3.21 16 16 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 17 C 0.16 6.48 5.66 86.38 0.49 6.97 16 18 N -0.76 -39.32 5.18 -343.44 -1.78 -41.10 16 19 C -0.23 -13.87 10.47 84.03 0.88 -12.99 16 20 H 0.07 4.34 8.06 -2.91 -0.02 4.31 16 21 C -0.05 -3.48 5.50 84.86 0.47 -3.01 16 22 N -0.98 -65.71 13.97 21.65 0.30 -65.41 16 23 Si 0.94 51.23 27.74 68.60 1.90 53.13 16 24 H -0.29 -15.61 7.11 99.48 0.71 -14.90 16 25 H -0.29 -15.28 7.11 99.48 0.71 -14.58 16 26 H -0.27 -14.01 6.52 99.48 0.65 -13.36 16 27 C 0.12 4.34 5.50 86.37 0.48 4.81 16 28 N -0.28 -7.73 11.10 -52.44 -0.58 -8.31 16 29 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.09 0.03 8.14 -2.38 -0.02 0.02 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.85 8.02 -2.39 -0.02 0.83 16 35 H 0.10 -0.38 7.34 -2.38 -0.02 -0.40 16 36 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.28 -0.34 7.53 -2.91 -0.02 -0.36 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.16 3.39 3.61 -60.28 -0.22 3.17 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.36 18.80 4.75 -92.71 -0.44 18.36 16 48 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 49 H 0.05 2.42 6.24 -2.39 -0.01 2.40 16 50 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -90.51 393.76 3.92 -86.59 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.22 Total: 17.55 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 8.83 Total: 22.60 kcal Atomic # 7 Polarization: -145.98 SS G_CDS: -6.97 Total: -152.95 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.06 Total: -26.92 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 1.90 Total: 53.13 kcal Total: -90.51 3.92 -86.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317158658.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.707 kcal (2) G-P(sol) polarization free energy of solvation -90.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds