Wall clock time and date at job start Tue Mar 31 2020 18:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46950 * 2 1 4 4 C 1.52997 * 109.46974 * 240.00274 * 2 1 3 5 5 N 1.46495 * 109.46869 * 120.00035 * 2 1 3 6 6 C 1.34580 * 125.74925 * 75.00171 * 5 2 1 7 7 N 1.30876 * 107.62783 * 179.72933 * 6 5 2 8 8 C 1.34550 * 107.26311 * 0.38462 * 7 6 5 9 9 C 1.47874 * 126.04466 * 179.87137 * 8 7 6 10 10 O 1.21552 * 120.00073 * 171.83239 * 9 8 7 11 11 N 1.34775 * 119.99947 * 351.82877 * 9 8 7 12 12 C 1.46928 * 120.63189 * 352.81615 * 11 9 8 13 13 C 1.53194 * 108.77693 * 233.58191 * 12 11 9 14 14 C 1.53042 * 109.31161 * 305.36687 * 13 12 11 15 15 C 1.53041 * 109.54097 * 61.36113 * 14 13 12 16 16 H 1.09006 * 109.51914 * 58.59893 * 15 14 13 17 17 C 1.52998 * 109.49845 * 178.68235 * 15 14 13 18 18 N 1.46498 * 109.47066 * 184.84032 * 17 15 14 19 19 C 1.36934 * 120.00273 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99777 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00392 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99816 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00235 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47134 * 179.97438 * 23 21 19 25 25 H 1.48510 * 109.46739 * 299.99759 * 23 21 19 26 26 H 1.48496 * 109.47090 * 59.99385 * 23 21 19 27 27 C 1.46926 * 120.62850 * 172.78845 * 11 9 8 28 28 N 1.28847 * 125.74775 * 254.97085 * 5 2 1 29 29 H 1.09007 * 109.46908 * 300.00507 * 1 2 3 30 30 H 1.09005 * 109.46845 * 59.99467 * 1 2 3 31 31 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46578 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47193 * 299.99627 * 3 2 1 34 34 H 1.08999 * 109.47174 * 60.00266 * 3 2 1 35 35 H 1.09002 * 109.47005 * 300.00045 * 4 2 1 36 36 H 1.08996 * 109.47373 * 59.99625 * 4 2 1 37 37 H 1.08997 * 109.47103 * 180.02562 * 4 2 1 38 38 H 1.08003 * 126.18683 * 359.95274 * 6 5 2 39 39 H 1.08997 * 109.58534 * 353.37492 * 12 11 9 40 40 H 1.09011 * 109.58645 * 113.65312 * 12 11 9 41 41 H 1.09000 * 109.49197 * 65.31567 * 13 12 11 42 42 H 1.08997 * 109.49910 * 185.37906 * 13 12 11 43 43 H 1.09005 * 109.46182 * 301.34387 * 14 13 12 44 44 H 1.09000 * 109.45718 * 181.38255 * 14 13 12 45 45 H 1.08993 * 109.46890 * 64.84072 * 17 15 14 46 46 H 1.09003 * 109.47235 * 304.83647 * 17 15 14 47 47 H 0.97002 * 119.99844 * 0.02562 * 18 17 15 48 48 H 0.96995 * 120.00013 * 0.02562 * 22 21 19 49 49 H 1.09000 * 109.58876 * 6.63025 * 27 11 9 50 50 H 1.09000 * 109.70262 * 246.26912 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 2.0139 -2.0220 1.3922 7 7 2.5331 -2.2507 2.5716 8 6 2.8501 -1.0575 3.1065 9 6 3.4619 -0.8340 4.4340 10 8 3.8394 0.2774 4.7499 11 7 3.6008 -1.8625 5.2938 12 6 3.0108 -3.1742 4.9935 13 6 2.1366 -3.6040 6.1758 14 6 2.9687 -3.5682 7.4598 15 6 3.4567 -2.1401 7.7138 16 1 2.5997 -1.4713 7.7944 17 6 4.2608 -2.0990 9.0148 18 7 4.6293 -0.7138 9.3176 19 6 5.3566 -0.4290 10.4423 20 1 5.6590 -1.2256 11.1059 21 6 5.7054 0.8836 10.7295 22 7 5.3373 1.8543 9.9204 23 14 6.6982 1.2720 12.2634 24 1 6.9383 2.7354 12.3402 25 1 5.9461 0.8295 13.4651 26 1 7.9998 0.5597 12.2041 27 6 4.3457 -1.6936 6.5489 28 7 2.5248 -0.1256 2.2375 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 1.6511 -2.7673 0.6998 39 1 2.3994 -3.1025 4.0940 40 1 3.8045 -3.9051 4.8384 41 1 1.2919 -2.9217 6.2706 42 1 1.7695 -4.6164 6.0078 43 1 3.8270 -4.2319 7.3550 44 1 2.3558 -3.8972 8.2990 45 1 5.1638 -2.6990 8.9029 46 1 3.6563 -2.5002 9.8284 47 1 4.3574 0.0017 8.7218 48 1 4.8221 1.6526 9.1238 49 1 4.6151 -0.6451 6.6757 50 1 5.2494 -2.3027 6.5247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317158659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:49 Heat of formation + Delta-G solvation = 74.129046 kcal Electronic energy + Delta-G solvation = -29637.360192 eV Core-core repulsion = 25702.246781 eV Total energy + Delta-G solvation = -3935.113412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.76698 -39.89907 -37.83790 -37.37190 -35.03844 -33.31190 -32.54115 -31.63663 -31.20364 -29.42794 -28.16900 -28.02706 -26.24333 -25.17206 -23.75106 -23.21487 -22.93311 -21.39491 -20.51532 -20.22866 -19.21996 -17.49000 -17.13032 -16.89426 -16.67338 -16.13451 -15.21812 -15.05180 -14.74012 -14.67531 -14.46288 -14.25025 -14.09050 -13.68982 -13.48844 -13.32022 -13.12924 -13.00704 -12.93494 -12.79536 -12.44087 -12.42466 -12.38712 -12.27217 -11.92793 -11.67277 -11.39221 -11.01424 -10.82012 -10.64682 -10.63164 -10.58567 -10.41891 -10.13617 -10.13119 -9.86584 -9.75302 -9.63124 -9.03188 -8.76959 -8.41164 -6.87082 -5.96445 -2.96292 1.30011 1.82784 1.90306 2.96535 3.39098 3.59314 3.63992 3.75599 3.81609 3.87878 4.02618 4.13747 4.35663 4.53658 4.76307 4.77152 4.89652 4.96018 4.96766 5.02070 5.08587 5.11073 5.16665 5.21125 5.28515 5.30779 5.49143 5.51577 5.57478 5.71729 5.75364 5.76205 5.87073 5.93324 5.98351 6.04307 6.10193 6.15939 6.20918 6.22306 6.42938 6.46355 6.52461 6.76448 6.81869 6.91564 7.48081 7.83118 7.92493 8.29158 8.89609 9.37262 10.23491 10.38666 11.52085 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.002528 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.607331 B =11074.414888 C =12337.861780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 C -0.150 4.150 4 C -0.160 4.160 5 N -0.292 5.292 6 C 0.185 3.815 7 N -0.481 5.481 8 C 0.149 3.851 9 C 0.607 3.393 10 O -0.511 6.511 11 N -0.591 5.591 12 C 0.081 3.919 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.108 4.108 16 H 0.073 0.927 17 C 0.167 3.833 18 N -0.745 5.745 19 C -0.333 4.333 20 H 0.063 0.937 21 C -0.046 4.046 22 N -0.943 5.943 23 Si 1.081 2.919 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.296 1.296 27 C 0.123 3.877 28 N -0.245 5.245 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.221 0.779 39 H 0.132 0.868 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.368 0.632 48 H 0.257 0.743 49 H 0.099 0.901 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.468 -11.920 -27.386 32.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.084 3.916 3 C -0.208 4.208 4 C -0.218 4.218 5 N -0.089 5.089 6 C -0.110 4.110 7 N -0.207 5.207 8 C -0.130 4.130 9 C 0.390 3.610 10 O -0.383 6.383 11 N -0.324 5.324 12 C -0.041 4.041 13 C -0.170 4.170 14 C -0.151 4.151 15 C -0.127 4.127 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.391 5.391 19 C -0.464 4.464 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.588 5.588 23 Si 0.912 3.088 24 H -0.211 1.211 25 H -0.224 1.224 26 H -0.223 1.223 27 C 0.001 3.999 28 N -0.083 5.083 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.237 0.763 39 H 0.149 0.851 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.202 0.798 48 H 0.068 0.932 49 H 0.118 0.882 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.307 -9.861 -25.900 29.932 hybrid contribution -0.962 -1.440 -1.301 2.166 sum -12.270 -11.302 -27.201 31.909 Atomic orbital electron populations 1.22269 0.91672 1.03597 1.04257 1.21184 0.95338 0.94453 0.80592 1.22011 1.02713 0.92146 1.03898 1.22261 1.02762 1.01079 0.95681 1.47779 1.41374 1.06196 1.13529 1.26443 1.01609 0.86537 0.96394 1.71124 1.17406 1.25472 1.06740 1.23835 1.05833 0.85420 0.97926 1.16402 0.78967 0.84555 0.81039 1.90886 1.49078 1.22667 1.75711 1.47838 1.53508 1.10994 1.20036 1.22573 0.97910 0.83297 1.00344 1.21915 0.98564 1.01291 0.95247 1.21532 0.99678 0.96614 0.97225 1.21703 0.99022 0.96630 0.95367 0.90904 1.20568 0.95292 0.88178 0.92105 1.42434 1.66197 1.02125 1.28319 1.20004 1.30054 0.94999 1.01351 0.91859 1.25777 1.02320 0.91354 1.04981 1.70844 1.40368 1.32998 1.14594 0.83238 0.75337 0.75929 0.74300 1.21080 1.22376 1.22341 1.21761 0.93273 1.04240 0.80590 1.74345 1.13292 1.25354 0.95309 0.91146 0.89537 0.91353 0.91173 0.90273 0.90385 0.91148 0.89277 0.91099 0.76298 0.85098 0.91807 0.91976 0.90971 0.91745 0.91682 0.96130 0.95985 0.79803 0.93154 0.88241 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 8.72 37.16 0.32 -0.32 16 2 C 0.17 0.95 1.23 -131.82 -0.16 0.78 16 3 C -0.15 -1.00 8.04 37.16 0.30 -0.70 16 4 C -0.16 -0.47 8.28 37.16 0.31 -0.16 16 5 N -0.29 -2.77 3.17 -49.84 -0.16 -2.93 16 6 C 0.18 1.54 11.71 -90.48 -1.06 0.48 16 7 N -0.48 -5.79 7.89 -12.36 -0.10 -5.88 16 8 C 0.15 2.31 7.63 -156.35 -1.19 1.12 16 9 C 0.61 11.30 7.69 -12.32 -0.09 11.21 16 10 O -0.51 -11.63 16.51 5.32 0.09 -11.54 16 11 N -0.59 -9.81 2.97 -173.86 -0.52 -10.33 16 12 C 0.08 1.05 6.08 -3.71 -0.02 1.03 16 13 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 14 C -0.11 -1.54 5.17 -26.69 -0.14 -1.68 16 15 C -0.11 -1.91 2.38 -90.50 -0.21 -2.13 16 16 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 17 C 0.17 3.58 5.65 -4.04 -0.02 3.56 16 18 N -0.74 -20.14 5.37 -59.91 -0.32 -20.46 16 19 C -0.33 -9.96 9.99 -15.06 -0.15 -10.11 16 20 H 0.06 1.85 7.83 -52.49 -0.41 1.43 16 21 C -0.05 -1.43 5.50 -17.43 -0.10 -1.53 16 22 N -0.94 -31.10 13.70 55.49 0.76 -30.34 16 23 Si 1.08 27.28 29.92 -169.99 -5.09 22.19 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 27 C 0.12 2.27 5.53 -3.71 -0.02 2.25 16 28 N -0.25 -3.52 11.10 32.08 0.36 -3.16 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.68 8.02 -51.93 -0.42 0.27 16 35 H 0.07 0.10 7.34 -51.93 -0.38 -0.28 16 36 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.22 0.71 7.53 -52.48 -0.40 0.31 16 39 H 0.13 1.63 4.17 -58.83 -0.25 1.39 16 40 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.37 10.40 5.72 -40.82 -0.23 10.17 16 48 H 0.26 8.50 6.77 -40.82 -0.28 8.22 16 49 H 0.10 2.21 6.20 -51.93 -0.32 1.89 16 50 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -38.85 395.50 -9.66 -48.52 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.24 Total: 5.92 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.41 Total: 2.06 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: 0.02 Total: -73.10 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 27.28 SS G_CDS: -5.09 Total: 22.19 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.85 -9.66 -48.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317158659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.646 kcal (2) G-P(sol) polarization free energy of solvation -38.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds