Wall clock time and date at job start Tue Mar 31 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46950 * 2 1 4 4 C 1.52997 * 109.46974 * 240.00274 * 2 1 3 5 5 N 1.46495 * 109.46869 * 120.00035 * 2 1 3 6 6 C 1.34580 * 125.74925 * 75.00171 * 5 2 1 7 7 N 1.30876 * 107.62783 * 179.72933 * 6 5 2 8 8 C 1.34550 * 107.26311 * 0.38462 * 7 6 5 9 9 C 1.47874 * 126.04466 * 179.87137 * 8 7 6 10 10 O 1.21552 * 120.00073 * 171.83239 * 9 8 7 11 11 N 1.34775 * 119.99947 * 351.82877 * 9 8 7 12 12 C 1.46928 * 120.63189 * 352.81615 * 11 9 8 13 13 C 1.53194 * 108.77693 * 233.58191 * 12 11 9 14 14 C 1.53042 * 109.31161 * 305.36687 * 13 12 11 15 15 C 1.53041 * 109.54097 * 61.36113 * 14 13 12 16 16 H 1.09006 * 109.51914 * 58.59893 * 15 14 13 17 17 C 1.52998 * 109.49845 * 178.68235 * 15 14 13 18 18 N 1.46498 * 109.47066 * 184.84032 * 17 15 14 19 19 C 1.36934 * 120.00273 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99777 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00392 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99816 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00235 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47134 * 179.97438 * 23 21 19 25 25 H 1.48510 * 109.46739 * 299.99759 * 23 21 19 26 26 H 1.48496 * 109.47090 * 59.99385 * 23 21 19 27 27 C 1.46926 * 120.62850 * 172.78845 * 11 9 8 28 28 N 1.28847 * 125.74775 * 254.97085 * 5 2 1 29 29 H 1.09007 * 109.46908 * 300.00507 * 1 2 3 30 30 H 1.09005 * 109.46845 * 59.99467 * 1 2 3 31 31 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46578 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47193 * 299.99627 * 3 2 1 34 34 H 1.08999 * 109.47174 * 60.00266 * 3 2 1 35 35 H 1.09002 * 109.47005 * 300.00045 * 4 2 1 36 36 H 1.08996 * 109.47373 * 59.99625 * 4 2 1 37 37 H 1.08997 * 109.47103 * 180.02562 * 4 2 1 38 38 H 1.08003 * 126.18683 * 359.95274 * 6 5 2 39 39 H 1.08997 * 109.58534 * 353.37492 * 12 11 9 40 40 H 1.09011 * 109.58645 * 113.65312 * 12 11 9 41 41 H 1.09000 * 109.49197 * 65.31567 * 13 12 11 42 42 H 1.08997 * 109.49910 * 185.37906 * 13 12 11 43 43 H 1.09005 * 109.46182 * 301.34387 * 14 13 12 44 44 H 1.09000 * 109.45718 * 181.38255 * 14 13 12 45 45 H 1.08993 * 109.46890 * 64.84072 * 17 15 14 46 46 H 1.09003 * 109.47235 * 304.83647 * 17 15 14 47 47 H 0.97002 * 119.99844 * 0.02562 * 18 17 15 48 48 H 0.96995 * 120.00013 * 0.02562 * 22 21 19 49 49 H 1.09000 * 109.58876 * 6.63025 * 27 11 9 50 50 H 1.09000 * 109.70262 * 246.26912 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 2.0139 -2.0220 1.3922 7 7 2.5331 -2.2507 2.5716 8 6 2.8501 -1.0575 3.1065 9 6 3.4619 -0.8340 4.4340 10 8 3.8394 0.2774 4.7499 11 7 3.6008 -1.8625 5.2938 12 6 3.0108 -3.1742 4.9935 13 6 2.1366 -3.6040 6.1758 14 6 2.9687 -3.5682 7.4598 15 6 3.4567 -2.1401 7.7138 16 1 2.5997 -1.4713 7.7944 17 6 4.2608 -2.0990 9.0148 18 7 4.6293 -0.7138 9.3176 19 6 5.3566 -0.4290 10.4423 20 1 5.6590 -1.2256 11.1059 21 6 5.7054 0.8836 10.7295 22 7 5.3373 1.8543 9.9204 23 14 6.6982 1.2720 12.2634 24 1 6.9383 2.7354 12.3402 25 1 5.9461 0.8295 13.4651 26 1 7.9998 0.5597 12.2041 27 6 4.3457 -1.6936 6.5489 28 7 2.5248 -0.1256 2.2375 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 1.6511 -2.7673 0.6998 39 1 2.3994 -3.1025 4.0940 40 1 3.8045 -3.9051 4.8384 41 1 1.2919 -2.9217 6.2706 42 1 1.7695 -4.6164 6.0078 43 1 3.8270 -4.2319 7.3550 44 1 2.3558 -3.8972 8.2990 45 1 5.1638 -2.6990 8.9029 46 1 3.6563 -2.5002 9.8284 47 1 4.3574 0.0017 8.7218 48 1 4.8221 1.6526 9.1238 49 1 4.6151 -0.6451 6.6757 50 1 5.2494 -2.3027 6.5247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317158659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:48 Heat of formation + Delta-G solvation = 48.251487 kcal Electronic energy + Delta-G solvation = -29638.482328 eV Core-core repulsion = 25702.246781 eV Total energy + Delta-G solvation = -3936.235547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.63487 -41.25973 -38.99023 -38.25705 -36.91446 -34.80249 -33.62069 -33.11996 -32.17494 -31.21355 -28.55266 -28.40993 -27.59849 -26.79539 -25.06301 -24.73891 -24.01028 -22.80936 -21.64825 -21.14481 -20.42370 -19.35412 -18.42266 -17.85937 -17.66294 -17.28223 -16.70597 -16.41821 -15.94615 -15.86652 -15.65904 -15.40647 -15.18781 -15.02669 -14.92400 -14.38829 -14.29563 -14.11809 -13.84388 -13.73851 -13.33096 -13.30284 -13.20693 -12.88041 -12.78446 -12.69156 -12.53287 -12.42618 -12.18579 -12.06868 -11.99075 -11.92669 -11.83053 -11.61042 -11.52303 -11.47760 -11.21172 -10.95801 -10.72960 -10.62267 -9.76607 -9.14678 -8.42758 -5.36732 0.25154 1.03720 1.10168 1.55289 1.67566 1.79252 1.83688 2.12367 2.71085 2.91111 3.20395 3.38181 3.55780 3.64129 3.67396 3.75734 3.78426 3.83693 3.86780 4.01584 4.10414 4.26143 4.38867 4.49940 4.56128 4.57290 4.58851 4.65614 4.67438 4.73756 4.76398 4.78542 4.81248 4.86736 4.92119 4.96590 5.04520 5.09629 5.13213 5.17722 5.21122 5.24614 5.35750 5.42120 5.48839 5.55571 5.80002 6.18092 6.43119 6.77718 7.04740 7.05364 7.95288 8.09147 9.08369 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.002528 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.607331 B =11074.414888 C =12337.861780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 C -0.151 4.151 4 C -0.154 4.154 5 N -0.286 5.286 6 C 0.205 3.795 7 N -0.490 5.490 8 C 0.123 3.877 9 C 0.597 3.403 10 O -0.575 6.575 11 N -0.585 5.585 12 C 0.077 3.923 13 C -0.124 4.124 14 C -0.105 4.105 15 C -0.094 4.094 16 H 0.048 0.952 17 C 0.165 3.835 18 N -0.761 5.761 19 C -0.335 4.335 20 H 0.073 0.927 21 C -0.112 4.112 22 N -0.976 5.976 23 Si 1.134 2.866 24 H -0.294 1.294 25 H -0.273 1.273 26 H -0.274 1.274 27 C 0.129 3.871 28 N -0.277 5.277 29 H 0.042 0.958 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.055 0.945 38 H 0.279 0.721 39 H 0.143 0.857 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.356 0.644 48 H 0.239 0.761 49 H 0.049 0.951 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.909 -15.741 -29.551 36.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.077 3.923 3 C -0.209 4.209 4 C -0.212 4.212 5 N -0.082 5.082 6 C -0.088 4.088 7 N -0.217 5.217 8 C -0.156 4.156 9 C 0.382 3.618 10 O -0.452 6.452 11 N -0.317 5.317 12 C -0.043 4.043 13 C -0.162 4.162 14 C -0.143 4.143 15 C -0.114 4.114 16 H 0.067 0.933 17 C 0.038 3.962 18 N -0.406 5.406 19 C -0.466 4.466 20 H 0.091 0.909 21 C -0.302 4.302 22 N -0.624 5.624 23 Si 0.957 3.043 24 H -0.221 1.221 25 H -0.199 1.199 26 H -0.200 1.200 27 C 0.006 3.994 28 N -0.118 5.118 29 H 0.061 0.939 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.074 0.926 38 H 0.294 0.706 39 H 0.160 0.840 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.131 0.869 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.188 0.812 48 H 0.049 0.951 49 H 0.068 0.932 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.787 -13.791 -28.095 33.808 hybrid contribution -0.583 -0.300 -0.790 1.027 sum -13.370 -14.091 -28.884 34.809 Atomic orbital electron populations 1.22291 0.89868 1.04896 1.04257 1.21687 0.96617 0.93751 0.80293 1.22031 1.01347 0.93572 1.03934 1.22306 1.01861 1.02518 0.94538 1.48188 1.39982 1.06988 1.13060 1.27469 0.98909 0.86804 0.95647 1.70975 1.18355 1.24006 1.08346 1.23159 1.08104 0.87158 0.97133 1.16958 0.78366 0.83986 0.82457 1.90835 1.51966 1.25098 1.77308 1.47936 1.52770 1.12190 1.18784 1.22904 0.98649 0.81369 1.01415 1.21907 0.97472 1.03277 0.93509 1.21528 1.00769 0.93196 0.98819 1.21560 0.97254 0.99410 0.93161 0.93317 1.20773 0.96034 0.85289 0.94074 1.42729 1.66108 1.04158 1.27581 1.20446 1.29071 0.95302 1.01802 0.90934 1.27450 1.03524 0.91655 1.07597 1.70984 1.42339 1.34036 1.15088 0.82584 0.74969 0.75374 0.71342 1.22059 1.19889 1.20023 1.21494 0.94241 1.01382 0.82264 1.74269 1.14146 1.26639 0.96728 0.93856 0.86837 0.89371 0.93300 0.87076 0.93480 0.88538 0.86787 0.92571 0.70588 0.84042 0.90044 0.93159 0.86870 0.90038 0.90355 0.95310 0.95348 0.81226 0.95096 0.93205 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 8.72 71.98 0.63 -0.18 16 2 C 0.16 1.47 1.23 3.61 0.00 1.47 16 3 C -0.15 -2.02 8.04 71.98 0.58 -1.44 16 4 C -0.15 -0.31 8.28 71.98 0.60 0.28 16 5 N -0.29 -5.09 3.17 -311.58 -0.99 -6.08 16 6 C 0.21 2.78 11.71 180.30 2.11 4.89 16 7 N -0.49 -11.04 7.89 -193.03 -1.52 -12.56 16 8 C 0.12 3.94 7.63 137.13 1.05 4.99 16 9 C 0.60 24.01 7.69 86.80 0.67 24.68 16 10 O -0.58 -29.18 16.51 -3.88 -0.06 -29.25 16 11 N -0.59 -20.27 2.97 -822.26 -2.44 -22.71 16 12 C 0.08 1.88 6.08 86.36 0.53 2.40 16 13 C -0.12 -2.64 6.08 30.67 0.19 -2.45 16 14 C -0.11 -2.66 5.17 30.62 0.16 -2.50 16 15 C -0.09 -3.43 2.38 -10.72 -0.03 -3.46 16 16 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 17 C 0.16 7.18 5.65 86.38 0.49 7.67 16 18 N -0.76 -42.94 5.37 -343.47 -1.85 -44.79 16 19 C -0.34 -20.43 9.99 84.03 0.84 -19.59 16 20 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.11 -7.05 5.50 84.86 0.47 -6.58 16 22 N -0.98 -67.38 13.70 21.65 0.30 -67.08 16 23 Si 1.13 55.49 29.92 68.60 2.05 57.54 16 24 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 27 C 0.13 5.05 5.53 86.36 0.48 5.53 16 28 N -0.28 -8.36 11.10 -52.43 -0.58 -8.94 16 29 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.91 8.02 -2.39 -0.02 0.89 16 35 H 0.10 -0.27 7.34 -2.39 -0.02 -0.29 16 36 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.28 0.08 7.53 -2.91 -0.02 0.06 16 39 H 0.14 3.25 4.17 -16.00 -0.07 3.19 16 40 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 46 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.36 21.66 5.72 -92.71 -0.53 21.13 16 48 H 0.24 16.89 6.77 -92.71 -0.63 16.27 16 49 H 0.05 2.46 6.20 -2.39 -0.01 2.44 16 50 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -94.19 395.50 4.14 -90.05 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.49 Total: 28.11 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 8.75 Total: 15.70 kcal Atomic # 7 Polarization: -155.07 SS G_CDS: -7.08 Total: -162.16 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.06 Total: -29.25 kcal Atomic # 14 Polarization: 55.49 SS G_CDS: 2.05 Total: 57.54 kcal Total: -94.19 4.14 -90.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317158659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.301 kcal (2) G-P(sol) polarization free energy of solvation -94.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds