Wall clock time and date at job start Tue Mar 31 2020 19:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47214 * 2 1 4 4 N 1.46504 * 109.47310 * 180.02562 * 3 2 1 5 5 C 1.36933 * 119.99448 * 275.30757 * 4 3 2 6 6 H 1.08001 * 120.00654 * 37.58044 * 5 4 3 7 7 C 1.38808 * 120.00020 * 217.57709 * 5 4 3 8 8 N 1.31620 * 120.00085 * 21.42453 * 7 5 4 9 9 Si 1.86798 * 120.00405 * 201.42813 * 7 5 4 10 10 H 1.48501 * 109.47308 * 59.99759 * 9 7 5 11 11 H 1.48505 * 109.47416 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46918 * 299.99795 * 9 7 5 13 13 C 1.46491 * 120.00210 * 95.30679 * 4 3 2 14 14 C 1.53003 * 109.47101 * 270.00184 * 13 4 3 15 15 N 1.46501 * 109.46991 * 179.97438 * 14 13 4 16 16 C 1.34779 * 119.99890 * 179.97438 * 15 14 13 17 17 O 1.21276 * 119.99715 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99807 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.47092 * 180.02562 * 18 16 15 20 20 N 1.30829 * 125.96120 * 89.97677 * 19 18 16 21 21 C 1.33243 * 109.83043 * 179.97438 * 20 19 18 22 22 C 1.50695 * 125.52689 * 179.97438 * 21 20 19 23 23 C 1.53005 * 117.49980 * 188.76090 * 22 21 20 24 24 C 1.53008 * 117.49709 * 120.10603 * 22 21 20 25 25 N 1.30714 * 108.94422 * 359.97438 * 21 20 19 26 26 N 1.34431 * 125.95966 * 269.95375 * 19 18 16 27 27 C 1.46496 * 126.82405 * 0.02562 * 26 19 18 28 28 H 1.09000 * 109.47307 * 300.00380 * 1 2 3 29 29 H 1.09001 * 109.46840 * 59.99952 * 1 2 3 30 30 H 1.08996 * 109.47029 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47406 * 240.00029 * 2 1 3 32 32 H 1.08993 * 109.47274 * 119.99558 * 2 1 3 33 33 H 1.09000 * 109.47294 * 59.99611 * 3 2 1 34 34 H 1.09001 * 109.47256 * 299.99793 * 3 2 1 35 35 H 0.96998 * 120.00589 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47277 * 149.99899 * 13 4 3 37 37 H 1.09002 * 109.47316 * 30.00255 * 13 4 3 38 38 H 1.08997 * 109.47387 * 60.00228 * 14 13 4 39 39 H 1.08997 * 109.47222 * 299.99754 * 14 13 4 40 40 H 0.97001 * 120.00027 * 359.97438 * 15 14 13 41 41 H 1.09007 * 109.47236 * 60.00447 * 18 16 15 42 42 H 1.09002 * 109.47514 * 300.00293 * 18 16 15 43 43 H 1.08997 * 115.55482 * 334.43623 * 22 21 20 44 44 H 1.09002 * 117.49672 * 0.02562 * 23 22 21 45 45 H 1.08998 * 117.49854 * 145.01816 * 23 22 21 46 46 H 1.08994 * 117.50130 * 214.98217 * 24 22 21 47 47 H 1.09003 * 117.49507 * 359.97438 * 24 22 21 48 48 H 1.09005 * 109.47193 * 270.02582 * 27 26 19 49 49 H 1.08995 * 109.47487 * 30.02873 * 27 26 19 50 50 H 1.09006 * 109.47082 * 150.02891 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3327 1.1799 6 1 3.8185 0.6871 1.9619 7 6 5.3623 2.0511 1.3716 8 7 5.6025 3.1238 0.6479 9 14 6.5988 1.4954 2.6567 10 1 7.0675 0.1241 2.3324 11 1 7.7563 2.4257 2.6648 12 1 5.9554 1.4950 3.9951 13 6 4.2370 1.5601 -1.2641 14 6 4.4918 0.1647 -1.8376 15 7 5.2233 0.2823 -3.1015 16 6 5.5603 -0.8259 -3.7907 17 8 5.2576 -1.9203 -3.3647 18 6 6.3122 -0.7049 -5.0910 19 6 6.5633 -2.0793 -5.6559 20 7 5.7734 -2.7315 -6.4697 21 6 6.3077 -3.9155 -6.7661 22 6 5.6941 -4.9508 -7.6730 23 6 6.3604 -6.3272 -7.7266 24 6 6.4910 -5.3667 -8.9113 25 7 7.4505 -4.0334 -6.1426 26 7 7.6382 -2.8488 -5.4119 27 6 8.7789 -2.5173 -4.5546 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 6.4217 3.6257 0.7815 36 1 5.1895 2.0597 -1.0871 37 1 3.6477 2.1421 -1.9727 38 1 3.5393 -0.3349 -2.0147 39 1 5.0811 -0.4173 -1.1291 40 1 5.4650 1.1577 -3.4423 41 1 7.2645 -0.2045 -4.9149 42 1 5.7219 -0.1235 -5.7994 43 1 4.6085 -4.9135 -7.7624 44 1 7.2423 -6.4839 -7.1055 45 1 5.7131 -7.1952 -7.8514 46 1 5.9295 -5.6032 -9.8151 47 1 7.4588 -4.8910 -9.0700 48 1 9.5445 -2.0154 -5.1463 49 1 8.4503 -1.8580 -3.7513 50 1 9.1909 -3.4321 -4.1282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317547416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:58 Heat of formation + Delta-G solvation = 88.652031 kcal Electronic energy + Delta-G solvation = -28751.225406 eV Core-core repulsion = 24816.741758 eV Total energy + Delta-G solvation = -3934.483648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25246 -39.36753 -37.40609 -36.53499 -34.32336 -33.99018 -32.93814 -32.67523 -30.87617 -29.43763 -27.92394 -27.15380 -25.59849 -23.89112 -23.53453 -22.61718 -21.47945 -20.84745 -20.34699 -20.10193 -19.72220 -17.38244 -17.13808 -16.56972 -15.92312 -15.71340 -15.46108 -15.37924 -14.91886 -14.77932 -14.38983 -14.02449 -13.78605 -13.54733 -13.51728 -13.29624 -13.00779 -12.94681 -12.77711 -12.33169 -12.19985 -11.83538 -11.66379 -11.60904 -11.52698 -11.21629 -11.07328 -10.97997 -10.77802 -10.74043 -10.50132 -10.39739 -10.14102 -10.01864 -9.95573 -9.92832 -9.74056 -9.58031 -9.23848 -8.66349 -8.51524 -6.67377 -5.89370 -3.47872 1.46446 2.17837 2.64794 2.76562 3.30502 3.36307 3.40059 3.43079 3.68954 3.82206 4.23283 4.33399 4.40943 4.64207 4.75786 4.79334 4.88931 4.94548 4.98163 5.13512 5.21658 5.24412 5.39235 5.42593 5.44393 5.58307 5.65451 5.74613 5.87002 5.93087 5.98892 6.07165 6.16025 6.23060 6.26115 6.37017 6.39607 6.50557 6.59946 6.63496 6.68230 6.76654 6.94350 6.95912 7.15664 7.46782 7.74810 7.77687 8.07066 8.40528 8.44158 9.09078 9.70809 10.28865 11.10700 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.002536 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.077609 B =11039.108896 C =12322.812392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.260 4.260 6 H 0.061 0.939 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.138 3.862 14 C 0.098 3.902 15 N -0.716 5.716 16 C 0.511 3.489 17 O -0.535 6.535 18 C -0.069 4.069 19 C 0.307 3.693 20 N -0.528 5.528 21 C 0.254 3.746 22 C -0.069 4.069 23 C -0.161 4.161 24 C -0.160 4.160 25 N -0.317 5.317 26 N -0.372 5.372 27 C 0.095 3.905 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.030 0.970 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.116 0.884 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 -8.145 -16.092 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.079 0.921 7 C -0.187 4.187 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.010 3.990 14 C -0.027 4.027 15 N -0.367 5.367 16 C 0.294 3.706 17 O -0.412 6.412 18 C -0.112 4.112 19 C 0.030 3.970 20 N -0.255 5.255 21 C -0.028 4.028 22 C -0.089 4.089 23 C -0.199 4.199 24 C -0.198 4.198 25 N -0.146 5.146 26 N -0.162 5.162 27 C -0.047 4.047 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.134 0.866 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.113 0.887 48 H 0.099 0.901 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.675 -9.238 -15.813 18.679 hybrid contribution 0.944 0.348 0.797 1.284 sum 4.619 -8.889 -15.017 18.051 Atomic orbital electron populations 1.21720 0.97298 1.00439 1.01011 1.22185 0.93868 1.00908 1.01563 1.20945 0.84977 0.92979 0.98964 1.43595 0.99476 1.84774 1.02049 1.18980 1.05651 1.20391 0.93977 0.92129 1.25172 1.00831 0.94535 0.98121 1.69985 1.25730 1.14711 1.42538 0.86475 0.81011 0.78221 0.81745 1.20839 1.21573 1.20585 1.21063 1.00377 0.91086 0.86477 1.22516 0.94914 1.02929 0.82376 1.46073 1.57862 1.08163 1.24579 1.20032 0.80397 0.85171 0.85010 1.90761 1.54408 1.26538 1.69448 1.20250 1.03672 0.90238 0.97014 1.23311 0.84747 0.94900 0.94013 1.70207 1.30168 1.06410 1.18711 1.23012 0.90062 0.92798 0.96916 1.20037 0.98667 0.92660 0.97560 1.23039 1.03233 0.92212 1.01421 1.23029 1.01631 1.02950 0.92211 1.77889 1.20350 1.03019 1.13302 1.50049 1.17936 1.12078 1.36144 1.21976 0.86142 1.03299 0.93312 0.93202 0.93427 0.93798 0.92942 0.92393 0.93549 0.94697 0.93460 0.88364 0.95194 0.92876 0.91747 0.76711 0.86626 0.85091 0.85164 0.87893 0.87894 0.87819 0.88658 0.90082 0.88918 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.15 -2.65 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 3.01 5.72 -4.04 -0.02 2.98 16 4 N -0.58 -13.58 2.43 -173.24 -0.42 -14.01 16 5 C -0.26 -6.79 9.45 -15.06 -0.14 -6.93 16 6 H 0.06 1.60 7.92 -52.49 -0.42 1.19 16 7 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 8 N -0.89 -23.87 11.47 55.49 0.64 -23.23 16 9 Si 0.90 20.78 29.60 -169.99 -5.03 15.75 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.14 2.90 5.45 -4.04 -0.02 2.88 16 14 C 0.10 1.88 6.00 -4.04 -0.02 1.86 16 15 N -0.72 -10.77 5.56 -60.29 -0.33 -11.10 16 16 C 0.51 7.90 7.82 -10.99 -0.09 7.81 16 17 O -0.53 -10.93 16.03 5.56 0.09 -10.84 16 18 C -0.07 -0.76 5.82 -29.04 -0.17 -0.93 16 19 C 0.31 4.42 6.48 -155.69 -1.01 3.41 16 20 N -0.53 -8.53 11.19 -8.16 -0.09 -8.62 16 21 C 0.25 3.82 7.69 -156.85 -1.21 2.62 16 22 C -0.07 -0.78 6.33 -91.77 -0.58 -1.36 16 23 C -0.16 -1.48 10.14 -26.69 -0.27 -1.75 16 24 C -0.16 -1.39 10.24 -26.69 -0.27 -1.66 16 25 N -0.32 -4.80 12.24 32.42 0.40 -4.40 16 26 N -0.37 -5.12 4.04 -65.10 -0.26 -5.38 16 27 C 0.10 0.89 11.16 59.84 0.67 1.56 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.99 6.64 -51.93 -0.34 0.64 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 35 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.10 2.31 5.52 -51.93 -0.29 2.03 16 37 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 38 H 0.05 1.08 6.64 -51.93 -0.34 0.73 16 39 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.40 4.74 8.47 -40.82 -0.35 4.39 16 41 H 0.12 0.84 7.76 -51.92 -0.40 0.44 16 42 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.13 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.10 1.06 7.88 -51.93 -0.41 0.65 16 45 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.09 0.82 7.72 -51.93 -0.40 0.42 16 50 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 415.60 15.07 6.26 6.26 Total: -1.00 -34.42 415.60 -10.17 -44.59 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -8.39 Total: 4.86 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -3.02 Total: 6.13 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.08 Total: -66.74 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.42 -10.17 -44.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317547416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.240 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds