Wall clock time and date at job start Tue Mar 31 2020 19:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47214 * 2 1 4 4 N 1.46504 * 109.47310 * 180.02562 * 3 2 1 5 5 C 1.36933 * 119.99448 * 275.30757 * 4 3 2 6 6 H 1.08001 * 120.00654 * 37.58044 * 5 4 3 7 7 C 1.38808 * 120.00020 * 217.57709 * 5 4 3 8 8 N 1.31620 * 120.00085 * 21.42453 * 7 5 4 9 9 Si 1.86798 * 120.00405 * 201.42813 * 7 5 4 10 10 H 1.48501 * 109.47308 * 59.99759 * 9 7 5 11 11 H 1.48505 * 109.47416 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46918 * 299.99795 * 9 7 5 13 13 C 1.46491 * 120.00210 * 95.30679 * 4 3 2 14 14 C 1.53003 * 109.47101 * 270.00184 * 13 4 3 15 15 N 1.46501 * 109.46991 * 179.97438 * 14 13 4 16 16 C 1.34779 * 119.99890 * 179.97438 * 15 14 13 17 17 O 1.21276 * 119.99715 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99807 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.47092 * 180.02562 * 18 16 15 20 20 N 1.30829 * 125.96120 * 89.97677 * 19 18 16 21 21 C 1.33243 * 109.83043 * 179.97438 * 20 19 18 22 22 C 1.50695 * 125.52689 * 179.97438 * 21 20 19 23 23 C 1.53005 * 117.49980 * 188.76090 * 22 21 20 24 24 C 1.53008 * 117.49709 * 120.10603 * 22 21 20 25 25 N 1.30714 * 108.94422 * 359.97438 * 21 20 19 26 26 N 1.34431 * 125.95966 * 269.95375 * 19 18 16 27 27 C 1.46496 * 126.82405 * 0.02562 * 26 19 18 28 28 H 1.09000 * 109.47307 * 300.00380 * 1 2 3 29 29 H 1.09001 * 109.46840 * 59.99952 * 1 2 3 30 30 H 1.08996 * 109.47029 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47406 * 240.00029 * 2 1 3 32 32 H 1.08993 * 109.47274 * 119.99558 * 2 1 3 33 33 H 1.09000 * 109.47294 * 59.99611 * 3 2 1 34 34 H 1.09001 * 109.47256 * 299.99793 * 3 2 1 35 35 H 0.96998 * 120.00589 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47277 * 149.99899 * 13 4 3 37 37 H 1.09002 * 109.47316 * 30.00255 * 13 4 3 38 38 H 1.08997 * 109.47387 * 60.00228 * 14 13 4 39 39 H 1.08997 * 109.47222 * 299.99754 * 14 13 4 40 40 H 0.97001 * 120.00027 * 359.97438 * 15 14 13 41 41 H 1.09007 * 109.47236 * 60.00447 * 18 16 15 42 42 H 1.09002 * 109.47514 * 300.00293 * 18 16 15 43 43 H 1.08997 * 115.55482 * 334.43623 * 22 21 20 44 44 H 1.09002 * 117.49672 * 0.02562 * 23 22 21 45 45 H 1.08998 * 117.49854 * 145.01816 * 23 22 21 46 46 H 1.08994 * 117.50130 * 214.98217 * 24 22 21 47 47 H 1.09003 * 117.49507 * 359.97438 * 24 22 21 48 48 H 1.09005 * 109.47193 * 270.02582 * 27 26 19 49 49 H 1.08995 * 109.47487 * 30.02873 * 27 26 19 50 50 H 1.09006 * 109.47082 * 150.02891 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3327 1.1799 6 1 3.8185 0.6871 1.9619 7 6 5.3623 2.0511 1.3716 8 7 5.6025 3.1238 0.6479 9 14 6.5988 1.4954 2.6567 10 1 7.0675 0.1241 2.3324 11 1 7.7563 2.4257 2.6648 12 1 5.9554 1.4950 3.9951 13 6 4.2370 1.5601 -1.2641 14 6 4.4918 0.1647 -1.8376 15 7 5.2233 0.2823 -3.1015 16 6 5.5603 -0.8259 -3.7907 17 8 5.2576 -1.9203 -3.3647 18 6 6.3122 -0.7049 -5.0910 19 6 6.5633 -2.0793 -5.6559 20 7 5.7734 -2.7315 -6.4697 21 6 6.3077 -3.9155 -6.7661 22 6 5.6941 -4.9508 -7.6730 23 6 6.3604 -6.3272 -7.7266 24 6 6.4910 -5.3667 -8.9113 25 7 7.4505 -4.0334 -6.1426 26 7 7.6382 -2.8488 -5.4119 27 6 8.7789 -2.5173 -4.5546 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 6.4217 3.6257 0.7815 36 1 5.1895 2.0597 -1.0871 37 1 3.6477 2.1421 -1.9727 38 1 3.5393 -0.3349 -2.0147 39 1 5.0811 -0.4173 -1.1291 40 1 5.4650 1.1577 -3.4423 41 1 7.2645 -0.2045 -4.9149 42 1 5.7219 -0.1235 -5.7994 43 1 4.6085 -4.9135 -7.7624 44 1 7.2423 -6.4839 -7.1055 45 1 5.7131 -7.1952 -7.8514 46 1 5.9295 -5.6032 -9.8151 47 1 7.4588 -4.8910 -9.0700 48 1 9.5445 -2.0154 -5.1463 49 1 8.4503 -1.8580 -3.7513 50 1 9.1909 -3.4321 -4.1282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317547416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:57 Heat of formation + Delta-G solvation = 67.172784 kcal Electronic energy + Delta-G solvation = -28752.156816 eV Core-core repulsion = 24816.741758 eV Total energy + Delta-G solvation = -3935.415058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.27535 -40.69748 -38.30228 -38.13383 -35.78091 -34.92723 -34.61031 -33.76264 -32.59946 -30.68553 -29.19744 -28.14541 -27.33993 -25.17222 -24.75388 -23.32117 -22.85250 -22.29663 -21.83821 -21.26174 -20.80896 -18.84952 -18.17741 -18.04260 -17.15506 -16.94299 -16.79713 -16.55792 -16.32909 -15.97484 -15.77088 -15.53519 -14.93836 -14.78072 -14.65123 -14.49959 -14.29898 -14.20488 -14.16473 -13.37191 -13.26441 -13.12272 -13.06046 -12.91371 -12.71883 -12.63435 -12.52026 -12.41167 -12.22984 -12.03002 -11.89107 -11.87879 -11.67384 -11.48903 -11.36164 -11.16244 -11.08109 -10.75245 -10.52820 -10.20256 -10.06380 -8.58110 -7.85542 -5.48114 0.42741 1.28162 1.44750 1.47469 1.53964 1.54210 1.61294 2.23259 2.50792 2.78872 2.97317 3.21564 3.33552 3.44272 3.68572 3.86464 3.90738 4.04427 4.05282 4.21142 4.21357 4.28372 4.33844 4.36298 4.39949 4.53332 4.54046 4.56891 4.67277 4.73339 4.74684 4.86030 4.88777 4.99073 5.09974 5.15619 5.21944 5.23180 5.25614 5.25801 5.35968 5.39137 5.42629 5.61312 5.66541 5.74097 5.75759 6.45079 6.55670 7.02257 7.14841 7.22373 7.82976 8.35392 9.10232 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.002536 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.077609 B =11039.108896 C =12322.812392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.272 4.272 6 H 0.048 0.952 7 C -0.025 4.025 8 N -0.907 5.907 9 Si 0.949 3.051 10 H -0.286 1.286 11 H -0.286 1.286 12 H -0.279 1.279 13 C 0.145 3.855 14 C 0.121 3.879 15 N -0.704 5.704 16 C 0.514 3.486 17 O -0.589 6.589 18 C -0.057 4.057 19 C 0.294 3.706 20 N -0.560 5.560 21 C 0.239 3.761 22 C -0.097 4.097 23 C -0.154 4.154 24 C -0.139 4.139 25 N -0.340 5.340 26 N -0.376 5.376 27 C 0.086 3.914 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.051 0.949 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.418 0.582 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.134 0.866 44 H 0.088 0.912 45 H 0.126 0.874 46 H 0.131 0.869 47 H 0.087 0.913 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.794 -7.890 -17.593 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.318 5.318 5 C -0.402 4.402 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.551 5.551 9 Si 0.778 3.222 10 H -0.212 1.212 11 H -0.211 1.211 12 H -0.205 1.205 13 C 0.018 3.982 14 C -0.005 4.005 15 N -0.356 5.356 16 C 0.299 3.701 17 O -0.469 6.469 18 C -0.098 4.098 19 C 0.017 3.983 20 N -0.288 5.288 21 C -0.042 4.042 22 C -0.118 4.118 23 C -0.192 4.192 24 C -0.177 4.177 25 N -0.169 5.169 26 N -0.166 5.166 27 C -0.055 4.055 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.255 0.745 41 H 0.178 0.822 42 H 0.178 0.822 43 H 0.152 0.848 44 H 0.106 0.894 45 H 0.144 0.856 46 H 0.149 0.851 47 H 0.106 0.894 48 H 0.131 0.869 49 H 0.117 0.883 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.956 -8.951 -17.330 19.902 hybrid contribution 0.845 0.258 1.269 1.546 sum 4.800 -8.693 -16.060 18.883 Atomic orbital electron populations 1.21655 0.94292 1.01702 1.02066 1.22019 0.96421 0.98962 1.00087 1.21039 0.83485 0.94307 0.99115 1.43836 1.00799 1.85044 1.02099 1.19077 1.06338 1.20003 0.94771 0.93456 1.25703 1.01977 0.94692 0.99943 1.70064 1.25994 1.15299 1.43697 0.85647 0.79230 0.77468 0.79899 1.21247 1.21127 1.20451 1.20952 0.99403 0.91774 0.86079 1.21919 0.94186 1.01000 0.83429 1.45829 1.57254 1.09421 1.23127 1.20713 0.79488 0.83979 0.85891 1.90747 1.56524 1.28578 1.71055 1.20363 1.05638 0.89379 0.94443 1.23817 0.84747 0.95858 0.93850 1.70188 1.31323 1.07262 1.20057 1.23667 0.90125 0.93237 0.97189 1.20253 0.99082 0.93287 0.99138 1.23095 1.02681 0.92084 1.01293 1.23101 1.00931 1.01360 0.92347 1.77811 1.20909 1.04077 1.14077 1.50337 1.18722 1.11557 1.36011 1.22309 0.85764 1.03825 0.93614 0.92515 0.92002 0.92460 0.93813 0.94462 0.94665 0.93106 0.93538 0.90399 0.93509 0.93931 0.95274 0.74462 0.82153 0.82250 0.84819 0.89357 0.85606 0.85125 0.89420 0.86876 0.88335 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.19 16 2 C -0.14 -4.90 6.23 30.59 0.19 -4.71 16 3 C 0.15 5.92 5.72 86.38 0.49 6.41 16 4 N -0.60 -28.27 2.43 -702.00 -1.71 -29.98 16 5 C -0.27 -14.40 9.45 84.03 0.79 -13.60 16 6 H 0.05 2.58 7.92 -2.91 -0.02 2.56 16 7 C -0.02 -1.31 4.95 84.86 0.42 -0.89 16 8 N -0.91 -48.84 11.47 21.65 0.25 -48.59 16 9 Si 0.95 43.00 29.60 68.60 2.03 45.03 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.15 6.10 5.45 86.38 0.47 6.57 16 14 C 0.12 4.71 6.00 86.38 0.52 5.23 16 15 N -0.70 -20.38 5.56 -463.06 -2.57 -22.95 16 16 C 0.51 15.34 7.82 87.66 0.69 16.03 16 17 O -0.59 -24.34 16.03 -3.02 -0.05 -24.38 16 18 C -0.06 -1.11 5.82 29.10 0.17 -0.94 16 19 C 0.29 8.16 6.48 138.23 0.90 9.05 16 20 N -0.56 -18.00 11.19 -179.73 -2.01 -20.01 16 21 C 0.24 7.24 7.69 138.63 1.07 8.31 16 22 C -0.10 -2.18 6.33 -11.54 -0.07 -2.25 16 23 C -0.15 -2.69 10.14 30.62 0.31 -2.38 16 24 C -0.14 -2.22 10.24 30.62 0.31 -1.91 16 25 N -0.34 -10.31 12.24 -51.34 -0.63 -10.94 16 26 N -0.38 -10.07 4.04 -359.87 -1.45 -11.52 16 27 C 0.09 1.48 11.16 127.77 1.43 2.90 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.65 6.64 -2.38 -0.02 1.63 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.03 1.48 8.08 -2.39 -0.02 1.46 16 34 H 0.05 1.88 7.83 -2.39 -0.02 1.86 16 35 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 36 H 0.08 3.67 5.52 -2.39 -0.01 3.65 16 37 H 0.05 1.79 7.86 -2.39 -0.02 1.77 16 38 H 0.04 1.75 6.64 -2.39 -0.02 1.73 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.42 8.99 8.47 -92.71 -0.79 8.21 16 41 H 0.16 1.69 7.76 -2.38 -0.02 1.67 16 42 H 0.16 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.09 1.81 7.88 -2.39 -0.02 1.79 16 45 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.11 1.20 8.14 -2.38 -0.02 1.19 16 49 H 0.10 1.57 7.72 -2.39 -0.02 1.55 16 50 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -77.34 415.60 2.40 -74.93 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.15 Total: 23.78 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 8.39 Total: 24.63 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -8.13 Total: -144.00 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -77.34 2.40 -74.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317547416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.108 kcal (2) G-P(sol) polarization free energy of solvation -77.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds