Wall clock time and date at job start Tue Mar 31 2020 19:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47165 * 2 1 4 4 N 1.46903 * 109.46801 * 119.99641 * 2 1 3 5 5 C 1.46897 * 111.00009 * 173.59165 * 4 2 1 6 6 C 1.52999 * 109.47369 * 293.95513 * 5 4 2 7 7 H 1.09005 * 110.21944 * 65.47128 * 6 5 4 8 8 C 1.54476 * 110.32582 * 187.45158 * 6 5 4 9 9 C 1.54784 * 101.69373 * 93.42862 * 8 6 5 10 10 C 1.51287 * 104.11888 * 25.10393 * 9 8 6 11 11 O 1.21280 * 124.93893 * 163.67988 * 10 9 8 12 12 N 1.34421 * 110.11361 * 343.40618 * 10 9 8 13 13 C 1.38578 * 111.00508 * 297.54519 * 4 2 1 14 14 N 1.31216 * 126.46918 * 289.05004 * 13 4 2 15 15 N 1.28534 * 109.85950 * 179.81570 * 14 13 4 16 16 C 1.30294 * 110.05111 * 0.45168 * 15 14 13 17 17 C 1.50698 * 126.34663 * 179.76228 * 16 15 14 18 18 C 1.52998 * 109.47141 * 269.95603 * 17 16 15 19 19 C 1.50698 * 109.47141 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99970 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00104 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99864 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00211 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47195 * 89.99401 * 23 21 19 25 25 H 1.48490 * 109.47183 * 209.99996 * 23 21 19 26 26 H 1.48504 * 109.46774 * 329.99690 * 23 21 19 27 27 N 1.36448 * 126.47465 * 109.35200 * 13 4 2 28 28 C 1.46499 * 127.13542 * 0.02562 * 27 13 4 29 29 H 1.09004 * 109.47097 * 296.42541 * 1 2 3 30 30 H 1.08997 * 109.46795 * 56.42894 * 1 2 3 31 31 H 1.09002 * 109.47022 * 176.42996 * 1 2 3 32 32 H 1.09001 * 109.47329 * 239.99338 * 2 1 3 33 33 H 1.08997 * 109.47056 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46943 * 299.99757 * 3 2 1 35 35 H 1.09001 * 109.47537 * 59.99466 * 3 2 1 36 36 H 1.09001 * 109.47917 * 173.95443 * 5 4 2 37 37 H 1.09005 * 109.47288 * 53.94934 * 5 4 2 38 38 H 1.08993 * 110.97468 * 211.74069 * 8 6 5 39 39 H 1.09000 * 110.96618 * 335.46806 * 8 6 5 40 40 H 1.08997 * 110.61539 * 266.40561 * 9 8 6 41 41 H 1.08997 * 110.43176 * 143.70833 * 9 8 6 42 42 H 0.96999 * 124.34349 * 179.84047 * 12 10 9 43 43 H 1.09003 * 109.47239 * 29.95583 * 17 16 15 44 44 H 1.09003 * 109.46921 * 149.95915 * 17 16 15 45 45 H 1.09003 * 109.47038 * 300.00104 * 18 17 16 46 46 H 1.08997 * 109.47321 * 60.00129 * 18 17 16 47 47 H 0.97004 * 119.99920 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.46669 * 95.22935 * 28 27 13 49 49 H 1.08999 * 109.47252 * 215.21960 * 28 27 13 50 50 H 1.08998 * 109.47562 * 335.22688 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4800 -0.8461 1.1595 6 6 3.8628 -1.7863 0.0148 7 1 3.6075 -1.3355 -0.9444 8 6 5.3723 -2.1101 0.0683 9 6 5.3828 -3.4218 0.8899 10 6 4.0093 -4.0128 0.6592 11 8 3.7003 -5.1626 0.8898 12 7 3.1799 -3.0763 0.1672 13 6 1.6211 -0.0329 2.3513 14 7 2.0696 1.1220 2.7835 15 7 1.4784 1.4372 3.8804 16 6 0.6316 0.5053 4.2152 17 6 -0.2517 0.4979 5.4362 18 6 0.4845 -0.1788 6.5942 19 6 -0.3990 -0.1868 7.8149 20 1 -1.3870 0.2470 7.7693 21 6 0.0540 -0.7479 8.9901 22 7 1.2569 -1.2767 9.0455 23 14 -1.0415 -0.7585 10.5032 24 1 -1.8570 -1.9994 10.5153 25 1 -0.1988 -0.7080 11.7248 26 1 -1.9396 0.4238 10.4723 27 7 0.6924 -0.4644 3.2530 28 6 -0.0792 -1.7086 3.2012 29 1 -0.3633 0.4574 0.9203 30 1 -0.3633 0.5683 -0.8562 31 1 -0.3633 -1.0257 -0.0640 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.8276 -1.2639 2.1044 37 1 3.9436 0.1276 1.0003 38 1 5.7728 -2.2694 -0.9328 39 1 5.9218 -1.3235 0.5855 40 1 5.5343 -3.2105 1.9484 41 1 6.1552 -4.0962 0.5202 42 1 2.2495 -3.2332 -0.0578 43 1 -0.4986 1.5231 5.7123 44 1 -1.1681 -0.0506 5.2183 45 1 0.7315 -1.2040 6.3181 46 1 1.4010 0.3695 6.8121 47 1 1.5757 -1.6711 9.8724 48 1 0.4218 -2.4718 3.7968 49 1 -1.0780 -1.5337 3.6009 50 1 -0.1553 -2.0463 2.1677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338398197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:17 Heat of formation + Delta-G solvation = 46.560930 kcal Electronic energy + Delta-G solvation = -30342.547485 eV Core-core repulsion = 26406.238630 eV Total energy + Delta-G solvation = -3936.308855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.72519 -40.69616 -38.62329 -36.51658 -34.84252 -33.89857 -32.38153 -31.66723 -31.54555 -29.53364 -27.99046 -27.38024 -27.14651 -25.28292 -24.60036 -22.58253 -21.92541 -21.37574 -20.68138 -19.96716 -19.59111 -17.64171 -17.12399 -16.80907 -16.34480 -16.13686 -15.69462 -15.42979 -15.04510 -14.52414 -14.50207 -14.35498 -13.76948 -13.68111 -13.52586 -13.21277 -13.17709 -12.94653 -12.93070 -12.53812 -12.44648 -12.29522 -12.28389 -12.17074 -11.76026 -11.45066 -11.40723 -11.30205 -11.16638 -11.00789 -10.82274 -10.67932 -10.37840 -10.03218 -10.00616 -9.85164 -9.71787 -9.36382 -9.24689 -8.87083 -8.42845 -8.39861 -6.06654 -4.11070 2.04903 2.44821 2.46726 3.14968 3.20532 3.28703 3.35716 3.38691 3.58583 4.13315 4.15109 4.28662 4.40081 4.56758 4.63429 4.73929 4.80330 4.93708 4.95447 5.00961 5.06699 5.24770 5.27048 5.29519 5.30703 5.36179 5.43041 5.46923 5.49551 5.52785 5.62199 5.64860 5.67134 5.71654 5.77990 5.93378 6.21734 6.30040 6.33270 6.42515 6.51236 6.65205 6.66783 6.86867 6.91592 7.41778 7.53611 7.66402 7.90216 8.10500 8.27634 8.94897 9.11769 9.53766 11.04427 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.003113 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.503547 B = 8991.173080 C =10259.296483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 C -0.188 4.188 4 N -0.454 5.454 5 C 0.052 3.948 6 C 0.135 3.865 7 H 0.091 0.909 8 C -0.127 4.127 9 C -0.159 4.159 10 C 0.519 3.481 11 O -0.538 6.538 12 N -0.712 5.712 13 C 0.323 3.677 14 N -0.309 5.309 15 N -0.300 5.300 16 C 0.216 3.784 17 C -0.032 4.032 18 C 0.033 3.967 19 C -0.525 4.525 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.892 5.892 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.272 1.272 27 N -0.464 5.464 28 C 0.083 3.917 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.412 0.588 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.014 0.986 46 H 0.025 0.975 47 H 0.262 0.738 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -0.415 -24.243 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 C -0.247 4.247 4 N -0.179 5.179 5 C -0.076 4.076 6 C 0.029 3.971 7 H 0.109 0.891 8 C -0.165 4.165 9 C -0.199 4.199 10 C 0.305 3.695 11 O -0.415 6.415 12 N -0.367 5.367 13 C -0.033 4.033 14 N -0.154 5.154 15 N -0.140 5.140 16 C -0.051 4.051 17 C -0.072 4.072 18 C -0.006 4.006 19 C -0.563 4.563 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.530 5.530 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 N -0.157 5.157 28 C -0.061 4.061 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.251 0.749 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.032 0.968 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.672 -0.314 -23.918 24.372 hybrid contribution -1.330 -0.609 0.789 1.662 sum 3.341 -0.923 -23.129 23.388 Atomic orbital electron populations 1.21855 0.94102 1.02176 1.02212 1.21832 0.95991 0.93816 0.91018 1.22587 1.01823 0.96704 1.03576 1.58809 1.13015 1.47941 0.98142 1.22644 0.85435 0.99567 0.99990 1.21706 0.92588 0.84306 0.98517 0.89085 1.22641 0.94341 0.97806 1.01703 1.22397 0.96381 0.97973 1.03169 1.20879 0.88043 0.84995 0.75575 1.90768 1.80658 1.17720 1.52331 1.46106 1.14192 1.10339 1.66091 1.21959 0.95366 0.92823 0.93136 1.74502 1.22873 1.10477 1.07511 1.74058 1.08582 1.23602 1.07723 1.25621 1.00284 0.85632 0.93556 1.20456 0.94977 1.03619 0.88111 1.19055 0.96013 0.95189 0.90298 1.21128 1.01194 1.38676 0.95333 0.92312 1.25010 0.95068 0.95192 0.98939 1.69971 1.17134 1.38600 1.27309 0.86556 0.80402 0.78441 0.82399 1.20647 1.21155 1.19724 1.46189 1.31883 1.18816 1.18787 1.21978 0.96287 0.83702 1.04095 0.92757 0.91641 0.92002 0.88985 0.92115 0.92373 0.89965 0.89909 0.90984 0.89399 0.88747 0.87617 0.88027 0.74932 0.89318 0.91245 0.96786 0.95676 0.92841 0.90058 0.89413 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.17 37.16 0.34 -0.95 16 2 C 0.08 0.70 2.80 -67.71 -0.19 0.51 16 3 C -0.19 -1.84 8.37 37.15 0.31 -1.53 16 4 N -0.45 -4.85 4.29 -166.95 -0.72 -5.57 16 5 C 0.05 0.49 4.25 -3.83 -0.02 0.47 16 6 C 0.14 0.87 3.26 -67.01 -0.22 0.65 16 7 H 0.09 0.42 6.73 -51.93 -0.35 0.07 16 8 C -0.13 -0.65 6.71 -25.02 -0.17 -0.81 16 9 C -0.16 -1.21 6.86 -26.66 -0.18 -1.39 16 10 C 0.52 5.79 8.43 -10.86 -0.09 5.70 16 11 O -0.54 -8.58 18.03 5.56 0.10 -8.48 16 12 N -0.71 -6.03 5.66 -52.76 -0.30 -6.33 16 13 C 0.32 4.84 4.68 -318.89 -1.49 3.35 16 14 N -0.31 -5.54 9.71 30.31 0.29 -5.24 16 15 N -0.30 -6.16 12.18 32.99 0.40 -5.76 16 16 C 0.22 4.14 7.32 -154.01 -1.13 3.02 16 17 C -0.03 -0.64 5.53 -27.88 -0.15 -0.79 16 18 C 0.03 0.83 4.95 -27.88 -0.14 0.69 16 19 C -0.53 -14.31 9.11 -34.44 -0.31 -14.63 16 20 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 23 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 N -0.46 -7.41 3.20 -121.46 -0.39 -7.80 16 28 C 0.08 1.05 11.01 59.85 0.66 1.70 16 29 H 0.05 0.63 7.17 -51.93 -0.37 0.26 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.58 6.33 -51.93 -0.33 0.25 16 33 H 0.06 0.56 6.44 -51.93 -0.33 0.22 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 1.11 5.80 -51.93 -0.30 0.81 16 36 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 37 H 0.07 0.67 6.23 -51.93 -0.32 0.35 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.41 7.90 -51.93 -0.41 0.00 16 40 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.41 3.34 8.96 -40.82 -0.37 2.98 16 43 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 44 H 0.07 1.24 7.39 -51.93 -0.38 0.86 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.09 1.02 7.42 -51.93 -0.39 0.63 16 50 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 LS Contribution 399.11 15.07 6.01 6.01 Total: -1.00 -35.11 399.11 -9.92 -45.02 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.16 Total: 0.19 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.88 Total: -2.43 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.03 Total: -56.51 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.10 Total: -8.48 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.11 -9.92 -45.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338398197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.585 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds