Wall clock time and date at job start Tue Mar 31 2020 19:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47165 * 2 1 4 4 N 1.46903 * 109.46801 * 119.99641 * 2 1 3 5 5 C 1.46897 * 111.00009 * 173.59165 * 4 2 1 6 6 C 1.52999 * 109.47369 * 293.95513 * 5 4 2 7 7 H 1.09005 * 110.21944 * 65.47128 * 6 5 4 8 8 C 1.54476 * 110.32582 * 187.45158 * 6 5 4 9 9 C 1.54784 * 101.69373 * 93.42862 * 8 6 5 10 10 C 1.51287 * 104.11888 * 25.10393 * 9 8 6 11 11 O 1.21280 * 124.93893 * 163.67988 * 10 9 8 12 12 N 1.34421 * 110.11361 * 343.40618 * 10 9 8 13 13 C 1.38578 * 111.00508 * 297.54519 * 4 2 1 14 14 N 1.31216 * 126.46918 * 289.05004 * 13 4 2 15 15 N 1.28534 * 109.85950 * 179.81570 * 14 13 4 16 16 C 1.30294 * 110.05111 * 0.45168 * 15 14 13 17 17 C 1.50698 * 126.34663 * 179.76228 * 16 15 14 18 18 C 1.52998 * 109.47141 * 269.95603 * 17 16 15 19 19 C 1.50698 * 109.47141 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99970 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00104 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99864 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00211 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47195 * 89.99401 * 23 21 19 25 25 H 1.48490 * 109.47183 * 209.99996 * 23 21 19 26 26 H 1.48504 * 109.46774 * 329.99690 * 23 21 19 27 27 N 1.36448 * 126.47465 * 109.35200 * 13 4 2 28 28 C 1.46499 * 127.13542 * 0.02562 * 27 13 4 29 29 H 1.09004 * 109.47097 * 296.42541 * 1 2 3 30 30 H 1.08997 * 109.46795 * 56.42894 * 1 2 3 31 31 H 1.09002 * 109.47022 * 176.42996 * 1 2 3 32 32 H 1.09001 * 109.47329 * 239.99338 * 2 1 3 33 33 H 1.08997 * 109.47056 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46943 * 299.99757 * 3 2 1 35 35 H 1.09001 * 109.47537 * 59.99466 * 3 2 1 36 36 H 1.09001 * 109.47917 * 173.95443 * 5 4 2 37 37 H 1.09005 * 109.47288 * 53.94934 * 5 4 2 38 38 H 1.08993 * 110.97468 * 211.74069 * 8 6 5 39 39 H 1.09000 * 110.96618 * 335.46806 * 8 6 5 40 40 H 1.08997 * 110.61539 * 266.40561 * 9 8 6 41 41 H 1.08997 * 110.43176 * 143.70833 * 9 8 6 42 42 H 0.96999 * 124.34349 * 179.84047 * 12 10 9 43 43 H 1.09003 * 109.47239 * 29.95583 * 17 16 15 44 44 H 1.09003 * 109.46921 * 149.95915 * 17 16 15 45 45 H 1.09003 * 109.47038 * 300.00104 * 18 17 16 46 46 H 1.08997 * 109.47321 * 60.00129 * 18 17 16 47 47 H 0.97004 * 119.99920 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.46669 * 95.22935 * 28 27 13 49 49 H 1.08999 * 109.47252 * 215.21960 * 28 27 13 50 50 H 1.08998 * 109.47562 * 335.22688 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4800 -0.8461 1.1595 6 6 3.8628 -1.7863 0.0148 7 1 3.6075 -1.3355 -0.9444 8 6 5.3723 -2.1101 0.0683 9 6 5.3828 -3.4218 0.8899 10 6 4.0093 -4.0128 0.6592 11 8 3.7003 -5.1626 0.8898 12 7 3.1799 -3.0763 0.1672 13 6 1.6211 -0.0329 2.3513 14 7 2.0696 1.1220 2.7835 15 7 1.4784 1.4372 3.8804 16 6 0.6316 0.5053 4.2152 17 6 -0.2517 0.4979 5.4362 18 6 0.4845 -0.1788 6.5942 19 6 -0.3990 -0.1868 7.8149 20 1 -1.3870 0.2470 7.7693 21 6 0.0540 -0.7479 8.9901 22 7 1.2569 -1.2767 9.0455 23 14 -1.0415 -0.7585 10.5032 24 1 -1.8570 -1.9994 10.5153 25 1 -0.1988 -0.7080 11.7248 26 1 -1.9396 0.4238 10.4723 27 7 0.6924 -0.4644 3.2530 28 6 -0.0792 -1.7086 3.2012 29 1 -0.3633 0.4574 0.9203 30 1 -0.3633 0.5683 -0.8562 31 1 -0.3633 -1.0257 -0.0640 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.8276 -1.2639 2.1044 37 1 3.9436 0.1276 1.0003 38 1 5.7728 -2.2694 -0.9328 39 1 5.9218 -1.3235 0.5855 40 1 5.5343 -3.2105 1.9484 41 1 6.1552 -4.0962 0.5202 42 1 2.2495 -3.2332 -0.0578 43 1 -0.4986 1.5231 5.7123 44 1 -1.1681 -0.0506 5.2183 45 1 0.7315 -1.2040 6.3181 46 1 1.4010 0.3695 6.8121 47 1 1.5757 -1.6711 9.8724 48 1 0.4218 -2.4718 3.7968 49 1 -1.0780 -1.5337 3.6009 50 1 -0.1553 -2.0463 2.1677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338398197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:16 Heat of formation + Delta-G solvation = 22.900590 kcal Electronic energy + Delta-G solvation = -30343.573475 eV Core-core repulsion = 26406.238630 eV Total energy + Delta-G solvation = -3937.334844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.04053 -41.45738 -39.54232 -37.37871 -36.35429 -35.61124 -33.78209 -32.94944 -32.15671 -30.76508 -29.22405 -28.29415 -28.11876 -27.09985 -25.33852 -23.80258 -23.49274 -22.14584 -21.47635 -21.42504 -20.57005 -18.65115 -18.39946 -18.06900 -17.72846 -17.10774 -16.70451 -16.57304 -16.29502 -15.92922 -15.54144 -15.27258 -14.92660 -14.88503 -14.49896 -14.39427 -14.28850 -14.21483 -13.81132 -13.59841 -13.49538 -13.31895 -13.16729 -13.06937 -12.89393 -12.85294 -12.65020 -12.45433 -12.34986 -12.13736 -12.02780 -11.95484 -11.79300 -11.61003 -11.46632 -11.30667 -11.02662 -10.91578 -10.59189 -10.17510 -9.99374 -9.66792 -8.22276 -6.34926 0.75282 1.29687 1.41754 1.43320 1.54477 1.61060 1.79067 2.40355 2.43455 2.67250 3.12206 3.45863 3.50063 3.59384 3.65146 3.80801 3.90207 4.01161 4.05734 4.09346 4.20889 4.24078 4.28497 4.39895 4.43333 4.56066 4.60422 4.64902 4.67670 4.73747 4.80368 4.82733 4.89262 4.91972 4.94523 4.99697 5.07134 5.12038 5.14886 5.22102 5.41770 5.43890 5.56904 5.60314 5.72728 5.76132 5.95968 6.11268 6.13727 6.25821 6.81186 7.30899 7.35484 7.73291 8.89848 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.003113 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.503547 B = 8991.173080 C =10259.296483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 C -0.185 4.185 4 N -0.449 5.449 5 C 0.051 3.949 6 C 0.142 3.858 7 H 0.128 0.872 8 C -0.115 4.115 9 C -0.159 4.159 10 C 0.507 3.493 11 O -0.596 6.596 12 N -0.703 5.703 13 C 0.347 3.653 14 N -0.333 5.333 15 N -0.335 5.335 16 C 0.195 3.805 17 C -0.015 4.015 18 C 0.045 3.955 19 C -0.540 4.540 20 H 0.073 0.927 21 C 0.001 3.999 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.259 1.259 27 N -0.465 5.465 28 C 0.078 3.922 29 H 0.020 0.980 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.414 0.586 43 H 0.088 0.912 44 H 0.094 0.906 45 H -0.010 1.010 46 H -0.018 1.018 47 H 0.263 0.737 48 H 0.068 0.932 49 H 0.100 0.900 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -0.342 -26.862 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 C -0.243 4.243 4 N -0.175 5.175 5 C -0.077 4.077 6 C 0.037 3.963 7 H 0.145 0.855 8 C -0.153 4.153 9 C -0.199 4.199 10 C 0.295 3.705 11 O -0.478 6.478 12 N -0.356 5.356 13 C -0.010 4.010 14 N -0.177 5.177 15 N -0.175 5.175 16 C -0.074 4.074 17 C -0.055 4.055 18 C 0.006 3.994 19 C -0.578 4.578 20 H 0.091 0.909 21 C -0.197 4.197 22 N -0.575 5.575 23 Si 0.792 3.208 24 H -0.195 1.195 25 H -0.212 1.212 26 H -0.183 1.183 27 N -0.157 5.157 28 C -0.063 4.063 29 H 0.039 0.961 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.253 0.747 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.009 0.991 46 H 0.001 0.999 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.118 0.882 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.907 -0.196 -26.571 26.857 hybrid contribution -1.049 -0.617 1.489 1.922 sum 2.858 -0.812 -25.082 25.258 Atomic orbital electron populations 1.21868 0.94061 1.02947 1.01282 1.22058 0.96071 0.93478 0.90926 1.22537 1.02189 0.97105 1.02517 1.59129 1.13961 1.47180 0.97264 1.22729 0.84383 1.00493 1.00093 1.21881 0.93384 0.82569 0.98489 0.85461 1.22718 0.93381 0.96349 1.02874 1.22433 0.94605 0.99528 1.03345 1.21500 0.89662 0.84505 0.74817 1.90729 1.81904 1.20257 1.54895 1.46171 1.14251 1.10568 1.64564 1.22449 0.93352 0.91680 0.93489 1.74451 1.23844 1.12189 1.07213 1.73945 1.09356 1.25078 1.09089 1.25270 1.00869 0.86881 0.94343 1.20109 0.95326 1.03201 0.86824 1.18807 0.94702 0.93634 0.92238 1.21600 1.01898 1.38208 0.96056 0.90907 1.26006 0.96442 0.94684 1.02583 1.70127 1.19294 1.39816 1.28265 0.85395 0.78428 0.79167 0.77762 1.19526 1.21245 1.18293 1.46330 1.32200 1.19018 1.18121 1.22209 0.96246 0.82040 1.05845 0.96069 0.89832 0.90717 0.84968 0.91486 0.90400 0.93965 0.92800 0.90470 0.86568 0.87566 0.88449 0.86867 0.74685 0.89393 0.88775 0.99142 0.99940 0.92819 0.91338 0.88163 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.17 71.98 0.66 -1.48 16 2 C 0.08 1.14 2.80 44.91 0.13 1.26 16 3 C -0.18 -3.18 8.37 71.98 0.60 -2.58 16 4 N -0.45 -8.80 4.29 -682.09 -2.93 -11.73 16 5 C 0.05 0.86 4.25 86.30 0.37 1.23 16 6 C 0.14 1.32 3.26 45.44 0.15 1.47 16 7 H 0.13 0.41 6.73 -2.38 -0.02 0.39 16 8 C -0.12 -0.78 6.71 31.70 0.21 -0.56 16 9 C -0.16 -2.20 6.86 30.64 0.21 -1.99 16 10 C 0.51 10.95 8.43 87.90 0.74 11.69 16 11 O -0.60 -19.42 18.03 -3.03 -0.05 -19.47 16 12 N -0.70 -10.31 5.66 -439.43 -2.49 -12.80 16 13 C 0.35 10.37 4.68 260.12 1.22 11.58 16 14 N -0.33 -12.25 9.71 -58.01 -0.56 -12.81 16 15 N -0.33 -14.36 12.18 -49.54 -0.60 -14.97 16 16 C 0.19 7.74 7.32 137.64 1.01 8.74 16 17 C -0.01 -0.61 5.53 29.85 0.16 -0.45 16 18 C 0.04 2.35 4.95 29.85 0.15 2.50 16 19 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 20 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 21 C 0.00 0.05 5.46 84.66 0.46 0.51 16 22 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 23 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 27 N -0.46 -15.01 3.20 -538.19 -1.72 -16.73 16 28 C 0.08 1.95 11.01 127.77 1.41 3.35 16 29 H 0.02 0.45 7.17 -2.38 -0.02 0.44 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.13 0.90 6.33 -2.39 -0.02 0.89 16 33 H 0.07 1.05 6.44 -2.39 -0.02 1.04 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.04 1.11 5.80 -2.39 -0.01 1.10 16 36 H 0.05 1.25 8.05 -2.39 -0.02 1.23 16 37 H 0.08 1.28 6.23 -2.38 -0.01 1.26 16 38 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.11 0.55 7.90 -2.39 -0.02 0.53 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.41 5.68 8.96 -92.71 -0.83 4.85 16 43 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 44 H 0.09 3.34 7.39 -2.39 -0.02 3.32 16 45 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 46 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 47 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 48 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.10 2.23 7.42 -2.39 -0.02 2.21 16 50 H 0.12 2.18 8.11 -2.39 -0.02 2.16 16 Total: -1.00 -82.33 399.11 1.78 -80.55 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.12 Total: 13.75 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 7.71 Total: 5.63 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -8.02 Total: -126.15 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -82.33 1.78 -80.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338398197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.451 kcal (2) G-P(sol) polarization free energy of solvation -82.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds