Wall clock time and date at job start Tue Mar 31 2020 18:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46642 * 2 1 4 4 C 1.50700 * 109.47016 * 239.99775 * 2 1 3 5 5 O 1.21283 * 120.00215 * 18.86966 * 4 2 1 6 6 N 1.34776 * 119.99598 * 198.86978 * 4 2 1 7 7 C 1.47073 * 120.88273 * 5.38133 * 6 4 2 8 8 C 1.53699 * 108.27777 * 128.75793 * 7 6 4 9 9 N 1.46899 * 109.25903 * 54.08044 * 8 7 6 10 10 C 1.38574 * 111.00511 * 172.61119 * 9 8 7 11 11 N 1.31217 * 126.47770 * 124.32363 * 10 9 8 12 12 N 1.28520 * 109.86140 * 179.97438 * 11 10 9 13 13 C 1.30291 * 110.05728 * 359.97438 * 12 11 10 14 14 C 1.50704 * 126.35107 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46971 * 90.02500 * 14 13 12 16 16 C 1.50696 * 109.46845 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00393 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00139 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99330 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00124 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47208 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47053 * 120.00566 * 20 18 16 23 23 H 1.48498 * 109.47065 * 239.99931 * 20 18 16 24 24 N 1.36457 * 126.47191 * 304.01805 * 10 9 8 25 25 C 1.46501 * 127.13513 * 0.02977 * 24 10 9 26 26 C 1.46902 * 111.26644 * 296.76245 * 9 8 7 27 27 C 1.47081 * 120.87790 * 185.66073 * 6 4 2 28 28 H 1.08997 * 109.46721 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47293 * 299.99974 * 1 2 3 30 30 H 1.09000 * 109.47151 * 60.00578 * 1 2 3 31 31 H 1.09000 * 109.47151 * 119.99422 * 2 1 3 32 32 H 1.09004 * 109.46940 * 294.23564 * 3 2 1 33 33 H 1.08997 * 109.47428 * 54.24100 * 3 2 1 34 34 H 1.09001 * 109.46646 * 174.24719 * 3 2 1 35 35 H 1.09008 * 109.63040 * 248.52081 * 7 6 4 36 36 H 1.08994 * 109.63129 * 9.10511 * 7 6 4 37 37 H 1.09002 * 109.64442 * 294.08145 * 8 7 6 38 38 H 1.08999 * 109.44312 * 173.96185 * 8 7 6 39 39 H 1.08993 * 109.47133 * 210.02887 * 14 13 12 40 40 H 1.09004 * 109.46762 * 330.02443 * 14 13 12 41 41 H 1.08998 * 109.47087 * 300.00327 * 15 14 13 42 42 H 1.08994 * 109.46964 * 60.00188 * 15 14 13 43 43 H 0.97008 * 119.99547 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.47052 * 90.00345 * 25 24 10 45 45 H 1.09000 * 109.47214 * 210.00348 * 25 24 10 46 46 H 1.09000 * 109.47234 * 330.00481 * 25 24 10 47 47 H 1.08998 * 109.49651 * 303.13879 * 26 9 8 48 48 H 1.09007 * 109.51547 * 183.07809 * 26 9 8 49 49 H 1.09003 * 109.63195 * 350.89670 * 27 6 4 50 50 H 1.09003 * 109.62949 * 111.47908 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.2975 -0.8678 -2.1823 6 7 3.2983 -1.1709 -1.2730 7 6 4.1690 -1.0961 -0.0901 8 6 4.7686 -2.4897 0.1562 9 7 5.4274 -2.9574 -1.0707 10 6 6.1217 -4.1350 -0.8437 11 7 5.9727 -5.2658 -1.4923 12 7 6.7782 -6.1492 -1.0205 13 6 7.4833 -5.6387 -0.0511 14 6 8.5363 -6.3506 0.7585 15 6 9.8993 -6.1807 0.0845 16 6 10.9521 -6.8931 0.8937 17 1 10.6768 -7.4145 1.7986 18 6 12.2671 -6.8793 0.4791 19 7 12.6024 -6.2439 -0.6225 20 14 13.5722 -7.7618 1.4826 21 1 12.9410 -8.3942 2.6687 22 1 14.2152 -8.8080 0.6477 23 1 14.5979 -6.7851 1.9289 24 7 7.0935 -4.3360 0.0929 25 6 7.6101 -3.3594 1.0550 26 6 4.4617 -3.1184 -2.1659 27 6 3.8476 -1.7562 -2.5055 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.7633 1.9257 -0.9371 33 1 1.5949 1.9853 0.8339 34 1 3.1251 1.4443 0.1030 35 1 4.9683 -0.3767 -0.2686 36 1 3.5836 -0.7895 0.7767 37 1 3.9764 -3.1859 0.4317 38 1 5.4996 -2.4328 0.9626 39 1 8.5717 -5.9263 1.7618 40 1 8.2914 -7.4109 0.8209 41 1 9.8638 -6.6050 -0.9189 42 1 10.1441 -5.1204 0.0221 43 1 13.5276 -6.2339 -0.9140 44 1 7.0238 -3.4081 1.9726 45 1 8.6529 -3.5854 1.2777 46 1 7.5381 -2.3580 0.6305 47 1 3.6738 -3.8059 -1.8581 48 1 4.9699 -3.5174 -3.0438 49 1 3.0496 -1.8862 -3.2365 50 1 4.6166 -1.0990 -2.9118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341697720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:42 Heat of formation + Delta-G solvation = 48.823375 kcal Electronic energy + Delta-G solvation = -29413.299022 eV Core-core repulsion = 25477.088274 eV Total energy + Delta-G solvation = -3936.210748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.70252 -40.74635 -38.54266 -35.26918 -35.02999 -34.83525 -33.75100 -31.74866 -31.55841 -29.27299 -27.77277 -27.58825 -26.90647 -25.33842 -24.65989 -23.52432 -22.01247 -21.70603 -20.71024 -19.92476 -19.11189 -18.04322 -16.93536 -16.56256 -16.40317 -16.07836 -15.91312 -15.70843 -15.25726 -14.92643 -14.61214 -14.50987 -14.46141 -13.72659 -13.51556 -13.31077 -13.14748 -13.03293 -12.81339 -12.70227 -12.59925 -12.44381 -12.31464 -12.12098 -11.80853 -11.60436 -11.58492 -11.39794 -11.32886 -11.14644 -11.03544 -10.74171 -10.45642 -10.13878 -10.02171 -9.94604 -9.79161 -9.52181 -9.24143 -9.05363 -8.44799 -8.00321 -6.08612 -4.13023 2.02299 2.24370 2.35598 2.57728 3.19254 3.26235 3.34451 3.37603 3.55506 3.95394 4.25175 4.34148 4.38178 4.42025 4.52689 4.55551 4.73268 4.76269 4.83598 4.96587 4.99993 5.03382 5.07754 5.15139 5.16387 5.25062 5.27419 5.30923 5.37225 5.40288 5.43111 5.48135 5.49817 5.61248 5.68193 5.76081 5.82110 5.96977 6.12528 6.27106 6.40624 6.52435 6.61933 6.83886 6.97365 7.31932 7.51767 7.65622 7.78818 7.88759 8.25854 8.93442 9.14329 9.51839 11.02414 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028699 B = 0.002101 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.399094 B =13323.908880 C =13672.314645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C -0.142 4.142 4 C 0.520 3.480 5 O -0.537 6.537 6 N -0.617 5.617 7 C 0.114 3.886 8 C 0.033 3.967 9 N -0.446 5.446 10 C 0.332 3.668 11 N -0.321 5.321 12 N -0.294 5.294 13 C 0.215 3.785 14 C -0.031 4.031 15 C 0.031 3.969 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 N -0.483 5.483 25 C 0.074 3.926 26 C 0.061 3.939 27 C 0.115 3.885 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.026 0.974 42 H 0.014 0.986 43 H 0.261 0.739 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.105 0.895 49 H 0.104 0.896 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.285 17.427 5.599 27.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 C -0.200 4.200 4 C 0.309 3.691 5 O -0.414 6.414 6 N -0.351 5.351 7 C -0.010 4.010 8 C -0.095 4.095 9 N -0.170 5.170 10 C -0.025 4.025 11 N -0.165 5.165 12 N -0.132 5.132 13 C -0.053 4.053 14 C -0.071 4.071 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.210 1.210 24 N -0.178 5.178 25 C -0.069 4.069 26 C -0.067 4.067 27 C -0.008 4.008 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.032 0.968 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.121 0.879 46 H 0.107 0.893 47 H 0.075 0.925 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.757 16.764 3.828 26.954 hybrid contribution 1.086 0.032 1.634 1.962 sum -19.671 16.796 5.462 26.436 Atomic orbital electron populations 1.21648 0.92335 1.02731 1.02509 1.21350 0.98460 0.97539 0.96438 1.21759 1.01383 0.93682 1.03150 1.20738 0.80728 0.78115 0.89524 1.90698 1.55100 1.57268 1.38294 1.48235 1.12472 1.61326 1.13049 1.22006 0.94246 0.96318 0.88419 1.22863 0.98450 0.96639 0.91596 1.58571 1.27605 1.23034 1.07770 1.22370 0.94403 0.92453 0.93229 1.74502 1.20867 0.96175 1.24980 1.74005 1.06911 1.23191 1.09090 1.25589 1.00008 0.81072 0.98616 1.20449 0.91948 0.98791 0.95888 1.19079 0.87687 0.97325 0.96609 1.21170 0.92217 1.33545 1.09319 0.92230 1.25027 0.98790 0.95438 0.95093 1.69986 1.18141 1.42401 1.22452 0.86494 0.81567 0.79491 0.80196 1.19628 1.20911 1.21034 1.46057 1.30174 1.12262 1.29352 1.22122 1.02053 0.91763 0.91011 1.22426 0.93409 0.96787 0.94092 1.21823 0.98802 0.93243 0.86889 0.92284 0.91866 0.91472 0.88910 0.91902 0.91154 0.91974 0.89777 0.88489 0.92871 0.88778 0.91218 0.89251 0.95585 0.96763 0.92887 0.90761 0.87934 0.89260 0.92494 0.87653 0.87797 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.65 37.16 0.32 -0.56 16 2 C -0.12 -0.73 2.42 -91.77 -0.22 -0.95 16 3 C -0.14 -0.67 9.09 37.16 0.34 -0.34 16 4 C 0.52 4.99 6.87 -10.99 -0.08 4.92 16 5 O -0.54 -7.20 15.48 5.55 0.09 -7.12 16 6 N -0.62 -5.27 3.00 -172.18 -0.52 -5.78 16 7 C 0.11 0.69 5.88 -3.37 -0.02 0.67 16 8 C 0.03 0.28 5.45 -3.46 -0.02 0.26 16 9 N -0.45 -5.32 4.67 -173.93 -0.81 -6.14 16 10 C 0.33 5.32 7.21 -318.88 -2.30 3.03 16 11 N -0.32 -6.27 11.21 30.31 0.34 -5.93 16 12 N -0.29 -6.32 12.18 32.99 0.40 -5.92 16 13 C 0.21 4.16 7.32 -154.02 -1.13 3.03 16 14 C -0.03 -0.61 5.36 -27.88 -0.15 -0.76 16 15 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 16 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 20 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 N -0.48 -7.65 3.21 -121.46 -0.39 -8.04 16 25 C 0.07 0.81 9.15 59.85 0.55 1.36 16 26 C 0.06 0.69 5.06 -3.70 -0.02 0.67 16 27 C 0.11 1.09 6.61 -3.60 -0.02 1.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.52 7.91 -51.93 -0.41 0.11 16 31 H 0.09 0.41 6.35 -51.93 -0.33 0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.25 7.49 -51.93 -0.39 -0.14 16 35 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 36 H 0.10 0.35 5.48 -51.93 -0.28 0.07 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.67 5.20 -51.93 -0.27 0.40 16 39 H 0.07 1.20 7.95 -51.93 -0.41 0.79 16 40 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.07 0.60 7.73 -51.93 -0.40 0.20 16 45 H 0.10 1.24 7.90 -51.93 -0.41 0.83 16 46 H 0.09 0.80 7.68 -51.93 -0.40 0.40 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.11 1.32 7.87 -51.92 -0.41 0.91 16 49 H 0.10 1.06 7.04 -51.93 -0.37 0.69 16 50 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 396.69 15.07 5.98 5.98 Total: -1.00 -35.47 396.69 -10.77 -46.24 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -8.27 Total: -3.86 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.30 Total: 0.16 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.24 Total: -57.30 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: 0.09 Total: -7.12 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.47 -10.77 -46.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341697720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.064 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds