Wall clock time and date at job start Tue Mar 31 2020 18:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46642 * 2 1 4 4 C 1.50700 * 109.47016 * 239.99775 * 2 1 3 5 5 O 1.21283 * 120.00215 * 18.86966 * 4 2 1 6 6 N 1.34776 * 119.99598 * 198.86978 * 4 2 1 7 7 C 1.47073 * 120.88273 * 5.38133 * 6 4 2 8 8 C 1.53699 * 108.27777 * 128.75793 * 7 6 4 9 9 N 1.46899 * 109.25903 * 54.08044 * 8 7 6 10 10 C 1.38574 * 111.00511 * 172.61119 * 9 8 7 11 11 N 1.31217 * 126.47770 * 124.32363 * 10 9 8 12 12 N 1.28520 * 109.86140 * 179.97438 * 11 10 9 13 13 C 1.30291 * 110.05728 * 359.97438 * 12 11 10 14 14 C 1.50704 * 126.35107 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46971 * 90.02500 * 14 13 12 16 16 C 1.50696 * 109.46845 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00393 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00139 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99330 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00124 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47208 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47053 * 120.00566 * 20 18 16 23 23 H 1.48498 * 109.47065 * 239.99931 * 20 18 16 24 24 N 1.36457 * 126.47191 * 304.01805 * 10 9 8 25 25 C 1.46501 * 127.13513 * 0.02977 * 24 10 9 26 26 C 1.46902 * 111.26644 * 296.76245 * 9 8 7 27 27 C 1.47081 * 120.87790 * 185.66073 * 6 4 2 28 28 H 1.08997 * 109.46721 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47293 * 299.99974 * 1 2 3 30 30 H 1.09000 * 109.47151 * 60.00578 * 1 2 3 31 31 H 1.09000 * 109.47151 * 119.99422 * 2 1 3 32 32 H 1.09004 * 109.46940 * 294.23564 * 3 2 1 33 33 H 1.08997 * 109.47428 * 54.24100 * 3 2 1 34 34 H 1.09001 * 109.46646 * 174.24719 * 3 2 1 35 35 H 1.09008 * 109.63040 * 248.52081 * 7 6 4 36 36 H 1.08994 * 109.63129 * 9.10511 * 7 6 4 37 37 H 1.09002 * 109.64442 * 294.08145 * 8 7 6 38 38 H 1.08999 * 109.44312 * 173.96185 * 8 7 6 39 39 H 1.08993 * 109.47133 * 210.02887 * 14 13 12 40 40 H 1.09004 * 109.46762 * 330.02443 * 14 13 12 41 41 H 1.08998 * 109.47087 * 300.00327 * 15 14 13 42 42 H 1.08994 * 109.46964 * 60.00188 * 15 14 13 43 43 H 0.97008 * 119.99547 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.47052 * 90.00345 * 25 24 10 45 45 H 1.09000 * 109.47214 * 210.00348 * 25 24 10 46 46 H 1.09000 * 109.47234 * 330.00481 * 25 24 10 47 47 H 1.08998 * 109.49651 * 303.13879 * 26 9 8 48 48 H 1.09007 * 109.51547 * 183.07809 * 26 9 8 49 49 H 1.09003 * 109.63195 * 350.89670 * 27 6 4 50 50 H 1.09003 * 109.62949 * 111.47908 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.2975 -0.8678 -2.1823 6 7 3.2983 -1.1709 -1.2730 7 6 4.1690 -1.0961 -0.0901 8 6 4.7686 -2.4897 0.1562 9 7 5.4274 -2.9574 -1.0707 10 6 6.1217 -4.1350 -0.8437 11 7 5.9727 -5.2658 -1.4923 12 7 6.7782 -6.1492 -1.0205 13 6 7.4833 -5.6387 -0.0511 14 6 8.5363 -6.3506 0.7585 15 6 9.8993 -6.1807 0.0845 16 6 10.9521 -6.8931 0.8937 17 1 10.6768 -7.4145 1.7986 18 6 12.2671 -6.8793 0.4791 19 7 12.6024 -6.2439 -0.6225 20 14 13.5722 -7.7618 1.4826 21 1 12.9410 -8.3942 2.6687 22 1 14.2152 -8.8080 0.6477 23 1 14.5979 -6.7851 1.9289 24 7 7.0935 -4.3360 0.0929 25 6 7.6101 -3.3594 1.0550 26 6 4.4617 -3.1184 -2.1659 27 6 3.8476 -1.7562 -2.5055 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.7633 1.9257 -0.9371 33 1 1.5949 1.9853 0.8339 34 1 3.1251 1.4443 0.1030 35 1 4.9683 -0.3767 -0.2686 36 1 3.5836 -0.7895 0.7767 37 1 3.9764 -3.1859 0.4317 38 1 5.4996 -2.4328 0.9626 39 1 8.5717 -5.9263 1.7618 40 1 8.2914 -7.4109 0.8209 41 1 9.8638 -6.6050 -0.9189 42 1 10.1441 -5.1204 0.0221 43 1 13.5276 -6.2339 -0.9140 44 1 7.0238 -3.4081 1.9726 45 1 8.6529 -3.5854 1.2777 46 1 7.5381 -2.3580 0.6305 47 1 3.6738 -3.8059 -1.8581 48 1 4.9699 -3.5174 -3.0438 49 1 3.0496 -1.8862 -3.2365 50 1 4.6166 -1.0990 -2.9118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341697720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:41 Heat of formation + Delta-G solvation = 27.346799 kcal Electronic energy + Delta-G solvation = -29414.230316 eV Core-core repulsion = 25477.088274 eV Total energy + Delta-G solvation = -3937.142042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.04322 -41.49471 -39.43865 -36.43206 -36.19695 -35.64243 -35.22361 -33.52320 -32.32914 -30.62711 -28.95461 -28.07190 -27.85986 -27.05929 -25.48821 -24.26834 -23.64374 -22.81655 -21.72476 -21.31463 -19.82540 -18.85294 -18.56178 -17.87614 -17.45998 -17.17654 -16.79644 -16.56817 -16.48226 -16.24145 -15.75216 -15.19373 -15.12743 -15.04478 -14.91397 -14.37105 -14.27964 -14.07376 -13.84653 -13.59778 -13.36221 -13.27210 -13.14179 -13.00947 -12.88859 -12.77726 -12.65768 -12.54921 -12.44383 -12.34862 -12.06778 -12.04580 -11.87702 -11.85565 -11.48915 -11.26451 -11.18018 -10.82028 -10.73558 -10.57593 -9.83976 -9.31370 -8.19853 -6.32087 0.74950 1.18218 1.43322 1.45306 1.55092 1.57748 1.77093 1.87615 2.42383 2.52517 3.14663 3.34183 3.45561 3.63475 3.69244 3.75047 3.84206 3.94287 4.03324 4.06379 4.12055 4.19325 4.27170 4.29525 4.32073 4.41235 4.58932 4.63765 4.65827 4.67939 4.74120 4.77462 4.80106 4.87558 4.88274 4.90703 4.94680 5.03216 5.05592 5.26131 5.33636 5.36195 5.42836 5.46630 5.54106 5.61215 5.79554 6.10381 6.17759 6.31007 6.84619 7.08251 7.38130 7.73837 8.92334 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028699 B = 0.002101 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.399094 B =13323.908880 C =13672.314645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.514 3.486 5 O -0.585 6.585 6 N -0.616 5.616 7 C 0.116 3.884 8 C 0.029 3.971 9 N -0.439 5.439 10 C 0.350 3.650 11 N -0.364 5.364 12 N -0.335 5.335 13 C 0.199 3.801 14 C -0.013 4.013 15 C 0.042 3.958 16 C -0.536 4.536 17 H 0.074 0.926 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.255 1.255 22 H -0.286 1.286 23 H -0.278 1.278 24 N -0.478 5.478 25 C 0.063 3.937 26 C 0.067 3.933 27 C 0.124 3.876 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.121 0.879 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.045 0.955 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.086 0.914 41 H -0.021 1.021 42 H -0.003 1.003 43 H 0.263 0.737 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.041 0.959 48 H 0.087 0.913 49 H 0.092 0.908 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.323 19.504 9.181 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C -0.196 4.196 4 C 0.304 3.696 5 O -0.465 6.465 6 N -0.349 5.349 7 C -0.006 4.006 8 C -0.098 4.098 9 N -0.164 5.164 10 C -0.007 4.007 11 N -0.208 5.208 12 N -0.173 5.173 13 C -0.071 4.071 14 C -0.053 4.053 15 C 0.004 3.996 16 C -0.574 4.574 17 H 0.092 0.908 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.179 1.179 22 H -0.212 1.212 23 H -0.203 1.203 24 N -0.173 5.173 25 C -0.078 4.078 26 C -0.061 4.061 27 C 0.001 3.999 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.139 0.861 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.150 0.850 37 H 0.063 0.937 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.104 0.896 41 H -0.002 1.002 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.131 0.869 45 H 0.109 0.891 46 H 0.132 0.868 47 H 0.059 0.941 48 H 0.105 0.895 49 H 0.110 0.890 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.795 18.866 7.461 29.052 hybrid contribution 1.032 -0.521 0.470 1.248 sum -19.763 18.345 7.932 28.107 Atomic orbital electron populations 1.21662 0.92930 1.01914 1.02778 1.21433 0.97972 0.98394 0.95409 1.21772 1.02401 0.92354 1.03095 1.21472 0.80422 0.77606 0.90063 1.90680 1.56379 1.59166 1.40286 1.48350 1.12654 1.60562 1.13380 1.22285 0.94775 0.94983 0.88552 1.23106 0.98668 0.97678 0.90341 1.58765 1.27891 1.20239 1.09483 1.22763 0.93803 0.92593 0.91555 1.74391 1.22011 0.97565 1.26852 1.73882 1.08108 1.25102 1.10231 1.25319 1.00305 0.82723 0.98724 1.20136 0.89164 0.99204 0.96815 1.18845 0.90684 0.95525 0.94570 1.21628 0.92784 1.33260 1.09740 0.90807 1.26016 1.01498 0.96241 0.96174 1.70135 1.18723 1.44189 1.24468 0.85341 0.78429 0.78087 0.78828 1.17859 1.21185 1.20321 1.46206 1.29601 1.11754 1.29750 1.22551 1.01944 0.91595 0.91716 1.22327 0.92618 0.97718 0.93424 1.21641 0.98536 0.92250 0.87519 0.93684 0.89309 0.93453 0.86089 0.93670 0.89133 0.90526 0.87811 0.84969 0.93665 0.86503 0.88069 0.89556 1.00240 0.98507 0.92846 0.86856 0.89119 0.86767 0.94082 0.89458 0.89014 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.65 71.98 0.62 -0.94 16 2 C -0.11 -1.06 2.42 -11.54 -0.03 -1.08 16 3 C -0.14 -0.83 9.09 71.98 0.65 -0.17 16 4 C 0.51 9.15 6.87 87.66 0.60 9.75 16 5 O -0.59 -15.96 15.48 -3.04 -0.05 -16.01 16 6 N -0.62 -9.25 3.00 -817.05 -2.45 -11.70 16 7 C 0.12 0.91 5.88 86.51 0.51 1.42 16 8 C 0.03 0.40 5.45 86.54 0.47 0.87 16 9 N -0.44 -9.84 4.67 -704.20 -3.29 -13.13 16 10 C 0.35 11.08 7.21 260.11 1.88 12.95 16 11 N -0.36 -14.71 11.21 -58.01 -0.65 -15.36 16 12 N -0.34 -14.95 12.18 -49.54 -0.60 -15.56 16 13 C 0.20 7.77 7.32 137.64 1.01 8.78 16 14 C -0.01 -0.53 5.36 29.85 0.16 -0.37 16 15 C 0.04 2.16 4.95 29.85 0.15 2.30 16 16 C -0.54 -28.83 9.11 25.60 0.23 -28.59 16 17 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 18 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 19 N -0.94 -56.21 13.29 21.45 0.28 -55.93 16 20 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 24 N -0.48 -14.58 3.21 -538.18 -1.73 -16.31 16 25 C 0.06 1.18 9.15 127.77 1.17 2.35 16 26 C 0.07 1.55 5.06 86.38 0.44 1.99 16 27 C 0.12 2.28 6.61 86.35 0.57 2.85 16 28 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.73 7.91 -2.39 -0.02 0.71 16 31 H 0.12 0.48 6.35 -2.39 -0.02 0.46 16 32 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.08 0.25 7.49 -2.39 -0.02 0.23 16 35 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.13 0.18 5.48 -2.39 -0.01 0.16 16 37 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.12 1.09 5.20 -2.39 -0.01 1.08 16 39 H 0.10 3.31 7.95 -2.39 -0.02 3.29 16 40 H 0.09 3.44 8.14 -2.38 -0.02 3.42 16 41 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 42 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 44 H 0.11 1.28 7.73 -2.39 -0.02 1.26 16 45 H 0.09 2.00 7.90 -2.39 -0.02 1.98 16 46 H 0.11 1.58 7.68 -2.39 -0.02 1.56 16 47 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.09 2.33 7.87 -2.38 -0.02 2.31 16 49 H 0.09 1.96 7.04 -2.39 -0.02 1.94 16 50 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -82.79 396.69 3.36 -79.43 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.93 Total: 7.41 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 8.89 Total: 12.48 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -8.44 Total: -127.98 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.05 Total: -16.01 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -82.79 3.36 -79.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341697720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.772 kcal (2) G-P(sol) polarization free energy of solvation -82.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds