Wall clock time and date at job start Tue Mar 31 2020 18:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46797 * 2 1 4 4 C 1.52998 * 109.47118 * 120.00083 * 2 1 3 5 5 N 1.46495 * 109.47283 * 65.36725 * 4 2 1 6 6 C 1.36739 * 127.13722 * 264.30986 * 5 4 2 7 7 C 1.50706 * 126.34563 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47311 * 269.72026 * 7 6 5 9 9 C 1.50700 * 109.47447 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99482 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00419 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00035 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00120 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47066 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46929 * 119.99945 * 13 11 9 16 16 H 1.48502 * 109.47124 * 240.00313 * 13 11 9 17 17 N 1.30295 * 107.30532 * 179.73352 * 6 5 4 18 18 N 1.28527 * 110.05394 * 0.25750 * 17 6 5 19 19 C 1.31219 * 109.85901 * 0.02562 * 18 17 6 20 20 N 1.38582 * 126.46987 * 180.02562 * 19 18 17 21 21 C 1.47185 * 111.00375 * 19.24217 * 20 19 18 22 22 C 1.52995 * 108.72049 * 167.62235 * 21 20 19 23 23 N 1.46006 * 110.03744 * 50.30767 * 22 21 20 24 24 C 1.46502 * 118.53691 * 161.86517 * 23 22 21 25 25 C 1.33718 * 122.92757 * 341.84220 * 23 22 21 26 26 O 1.21286 * 118.62094 * 181.68988 * 25 23 22 27 27 C 1.46908 * 110.99644 * 256.35603 * 20 19 18 28 28 H 1.08994 * 109.46863 * 175.07160 * 1 2 3 29 29 H 1.08998 * 109.47239 * 295.06866 * 1 2 3 30 30 H 1.09000 * 109.47135 * 55.07080 * 1 2 3 31 31 H 1.08993 * 109.47198 * 240.00057 * 2 1 3 32 32 H 1.09004 * 109.46976 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47704 * 299.99891 * 3 2 1 34 34 H 1.09003 * 109.47201 * 60.00604 * 3 2 1 35 35 H 1.08999 * 109.46916 * 305.36481 * 4 2 1 36 36 H 1.09000 * 109.46707 * 185.36739 * 4 2 1 37 37 H 1.08994 * 109.46587 * 149.71786 * 7 6 5 38 38 H 1.09001 * 109.46700 * 29.72154 * 7 6 5 39 39 H 1.09001 * 109.47785 * 59.99707 * 8 7 6 40 40 H 1.09011 * 109.47244 * 299.99859 * 8 7 6 41 41 H 0.97003 * 120.00211 * 179.97438 * 12 11 9 42 42 H 1.08997 * 109.59966 * 287.41074 * 21 20 19 43 43 H 1.09001 * 109.59595 * 47.86729 * 21 20 19 44 44 H 1.08999 * 109.37481 * 290.13602 * 22 21 20 45 45 H 1.08995 * 109.28653 * 170.42337 * 22 21 20 46 46 H 1.08998 * 109.47064 * 179.97438 * 24 23 22 47 47 H 1.09001 * 109.47210 * 299.97859 * 24 23 22 48 48 H 1.09000 * 109.46917 * 59.97714 * 24 23 22 49 49 H 1.09004 * 109.38236 * 293.82024 * 27 20 19 50 50 H 1.08995 * 109.38690 * 53.51096 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6601 -2.1347 1.1864 6 6 0.5645 -2.7212 1.7569 7 6 -0.4925 -2.0295 2.5789 8 6 -0.0917 -2.0601 4.0551 9 6 -1.1489 -1.3690 4.8771 10 1 -2.0195 -0.9495 4.3947 11 6 -1.0044 -1.2713 6.2447 12 7 0.0558 -1.7817 6.8321 13 14 -2.3146 -0.4140 7.2635 14 1 -3.3985 0.0691 6.3708 15 1 -2.8769 -1.3692 8.2518 16 1 -1.7103 0.7391 7.9779 17 7 0.6010 -3.9878 1.4538 18 7 1.6399 -4.2406 0.7407 19 6 2.3279 -3.1397 0.5494 20 7 3.5064 -3.0193 -0.1698 21 6 3.6864 -4.1601 -1.0822 22 6 4.8175 -3.8335 -2.0594 23 7 5.9927 -3.3700 -1.3275 24 6 7.2915 -3.3888 -2.0051 25 6 5.9364 -2.9288 -0.0665 26 8 6.9565 -2.5329 0.4566 27 6 4.6622 -2.9024 0.7293 28 1 -0.3633 -1.0238 -0.0883 29 1 -0.3633 0.4354 0.9308 30 1 -0.3633 0.5884 -0.8425 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6004 -0.2659 2.1366 36 1 3.1258 -0.6387 1.2985 37 1 -1.4457 -2.5421 2.4504 38 1 -0.5891 -0.9948 2.2499 39 1 0.8616 -1.5475 4.1836 40 1 0.0049 -3.0949 4.3840 41 1 0.1576 -1.7126 7.7942 42 1 3.9445 -5.0501 -0.5084 43 1 2.7640 -4.3343 -1.6361 44 1 4.4882 -3.0535 -2.7460 45 1 5.0739 -4.7289 -2.6256 46 1 8.0597 -3.0145 -1.3284 47 1 7.5329 -4.4101 -2.2997 48 1 7.2482 -2.7556 -2.8913 49 1 4.5988 -1.9638 1.2799 50 1 4.6583 -3.7343 1.4336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342829297.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:15 Heat of formation + Delta-G solvation = 46.724709 kcal Electronic energy + Delta-G solvation = -30411.413270 eV Core-core repulsion = 26475.111517 eV Total energy + Delta-G solvation = -3936.301753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.79753 -40.75155 -37.68235 -37.01775 -35.72014 -34.12322 -33.09726 -31.84476 -30.36142 -29.65241 -27.81480 -27.29603 -26.76185 -25.54531 -25.00527 -23.97837 -21.87405 -21.38219 -20.39023 -19.79933 -18.92083 -17.64888 -17.42034 -16.71467 -16.52136 -16.29216 -15.84338 -15.46575 -15.14411 -15.00727 -14.53784 -14.46912 -13.88779 -13.73385 -13.61488 -13.26386 -13.10620 -12.94658 -12.81591 -12.51454 -12.38255 -12.30978 -12.20342 -12.06753 -11.77268 -11.61890 -11.39725 -11.26957 -11.05259 -10.96940 -10.83952 -10.67738 -10.51055 -10.28020 -10.03289 -9.91744 -9.74286 -9.34662 -9.23358 -9.09690 -8.44213 -8.22667 -6.08179 -4.12511 1.93851 2.24231 2.34342 2.61633 3.13375 3.26943 3.35182 3.38239 3.49671 4.06194 4.31240 4.38754 4.53240 4.62453 4.68636 4.82593 4.85808 4.89679 4.94599 4.99672 5.09777 5.14295 5.17174 5.25497 5.28177 5.33990 5.39390 5.50793 5.53080 5.55402 5.59154 5.63346 5.74927 5.77961 5.93916 5.95044 6.04310 6.13405 6.16548 6.35783 6.38576 6.42480 6.60458 6.82754 6.98439 7.29906 7.51334 7.64688 7.76115 7.88788 8.26109 8.93727 9.07727 9.52542 11.02880 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.003019 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.287264 B = 9273.701116 C = 9606.674188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.144 4.144 4 C 0.112 3.888 5 N -0.464 5.464 6 C 0.224 3.776 7 C -0.037 4.037 8 C 0.031 3.969 9 C -0.523 4.523 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.296 5.296 18 N -0.313 5.313 19 C 0.319 3.681 20 N -0.445 5.445 21 C 0.053 3.947 22 C 0.119 3.881 23 N -0.607 5.607 24 C 0.073 3.927 25 C 0.530 3.470 26 O -0.544 6.544 27 C 0.040 3.960 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.013 0.987 40 H 0.025 0.975 41 H 0.261 0.739 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.116 0.884 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.062 1.370 -21.043 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.124 4.124 3 C -0.202 4.202 4 C -0.011 4.011 5 N -0.157 5.157 6 C -0.043 4.043 7 C -0.077 4.077 8 C -0.007 4.007 9 C -0.562 4.562 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.210 1.210 17 N -0.135 5.135 18 N -0.158 5.158 19 C -0.038 4.038 20 N -0.171 5.171 21 C -0.075 4.075 22 C -0.004 4.004 23 N -0.341 5.341 24 C -0.070 4.070 25 C 0.317 3.683 26 O -0.421 6.421 27 C -0.090 4.090 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.134 0.866 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.271 0.540 -20.960 23.348 hybrid contribution -0.195 1.090 1.110 1.568 sum 10.076 1.630 -19.850 22.321 Atomic orbital electron populations 1.21973 0.94342 1.02182 1.02503 1.21422 0.96955 0.96525 0.97539 1.21765 1.01032 0.94843 1.02541 1.22085 1.01398 0.76922 1.00725 1.46223 1.19877 1.09166 1.40446 1.25597 0.90407 0.90623 0.97662 1.20586 0.92860 0.98024 0.96187 1.19077 0.96846 0.98241 0.86507 1.21152 1.06245 1.36854 0.91920 0.92237 1.25007 0.95646 0.95541 0.98035 1.69975 1.27725 1.45108 1.10174 0.86516 0.81768 0.79299 0.80316 1.19607 1.20916 1.21019 1.74043 1.14345 1.11926 1.13173 1.74506 1.04404 1.20549 1.16358 1.22110 0.95703 0.85724 1.00243 1.59135 0.97936 1.43305 1.16727 1.22446 0.99968 0.90818 0.94221 1.21615 0.83898 1.00564 0.94318 1.47320 1.09532 1.64010 1.13214 1.21769 0.85447 1.01841 0.97930 1.19821 0.90114 0.76708 0.81640 1.90744 1.34794 1.47814 1.68734 1.22458 0.86049 1.05732 0.94731 0.92598 0.91504 0.92413 0.90339 0.92464 0.92087 0.91937 0.87577 0.89356 0.89287 0.90681 0.96818 0.95674 0.92890 0.91546 0.87355 0.90440 0.89359 0.89088 0.92008 0.91989 0.86574 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 7.86 37.16 0.29 -1.45 16 2 C -0.11 -1.12 3.12 -90.62 -0.28 -1.41 16 3 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 4 C 0.11 1.42 5.36 -4.05 -0.02 1.40 16 5 N -0.46 -7.28 2.53 -114.09 -0.29 -7.56 16 6 C 0.22 4.21 6.27 -154.01 -0.97 3.24 16 7 C -0.04 -0.72 5.12 -27.88 -0.14 -0.86 16 8 C 0.03 0.78 4.95 -27.89 -0.14 0.64 16 9 C -0.52 -13.99 9.11 -34.44 -0.31 -14.30 16 10 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 13 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 N -0.30 -6.06 12.18 32.99 0.40 -5.66 16 18 N -0.31 -5.73 11.45 30.31 0.35 -5.39 16 19 C 0.32 4.90 6.84 -318.87 -2.18 2.71 16 20 N -0.45 -5.28 4.75 -175.90 -0.84 -6.12 16 21 C 0.05 0.50 5.03 -3.67 -0.02 0.48 16 22 C 0.12 0.81 6.64 -4.31 -0.03 0.78 16 23 N -0.61 -5.57 3.23 -182.47 -0.59 -6.16 16 24 C 0.07 0.52 10.55 59.85 0.63 1.15 16 25 C 0.53 6.45 7.57 -11.67 -0.09 6.36 16 26 O -0.54 -8.37 16.07 5.55 0.09 -8.28 16 27 C 0.04 0.49 5.51 -5.19 -0.03 0.46 16 28 H 0.05 0.74 6.98 -51.93 -0.36 0.38 16 29 H 0.07 0.79 6.95 -51.93 -0.36 0.43 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 1.46 7.59 -51.93 -0.39 1.07 16 36 H 0.09 1.02 6.55 -51.93 -0.34 0.68 16 37 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.07 1.31 5.41 -51.93 -0.28 1.03 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 43 H 0.11 1.02 7.98 -51.93 -0.41 0.60 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 46 H 0.09 0.83 6.67 -51.93 -0.35 0.48 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.12 1.41 6.57 -51.93 -0.34 1.07 16 50 H 0.09 1.14 8.09 -51.93 -0.42 0.72 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -33.60 397.54 -10.51 -44.11 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.29 Total: -1.26 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -3.04 Total: -0.16 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.23 Total: -56.32 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.60 -10.51 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342829297.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.832 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds