Wall clock time and date at job start Tue Mar 31 2020 18:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46797 * 2 1 4 4 C 1.52998 * 109.47118 * 120.00083 * 2 1 3 5 5 N 1.46495 * 109.47283 * 65.36725 * 4 2 1 6 6 C 1.36739 * 127.13722 * 264.30986 * 5 4 2 7 7 C 1.50706 * 126.34563 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47311 * 269.72026 * 7 6 5 9 9 C 1.50700 * 109.47447 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99482 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00419 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00035 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00120 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47066 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46929 * 119.99945 * 13 11 9 16 16 H 1.48502 * 109.47124 * 240.00313 * 13 11 9 17 17 N 1.30295 * 107.30532 * 179.73352 * 6 5 4 18 18 N 1.28527 * 110.05394 * 0.25750 * 17 6 5 19 19 C 1.31219 * 109.85901 * 0.02562 * 18 17 6 20 20 N 1.38582 * 126.46987 * 180.02562 * 19 18 17 21 21 C 1.47185 * 111.00375 * 19.24217 * 20 19 18 22 22 C 1.52995 * 108.72049 * 167.62235 * 21 20 19 23 23 N 1.46006 * 110.03744 * 50.30767 * 22 21 20 24 24 C 1.46502 * 118.53691 * 161.86517 * 23 22 21 25 25 C 1.33718 * 122.92757 * 341.84220 * 23 22 21 26 26 O 1.21286 * 118.62094 * 181.68988 * 25 23 22 27 27 C 1.46908 * 110.99644 * 256.35603 * 20 19 18 28 28 H 1.08994 * 109.46863 * 175.07160 * 1 2 3 29 29 H 1.08998 * 109.47239 * 295.06866 * 1 2 3 30 30 H 1.09000 * 109.47135 * 55.07080 * 1 2 3 31 31 H 1.08993 * 109.47198 * 240.00057 * 2 1 3 32 32 H 1.09004 * 109.46976 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47704 * 299.99891 * 3 2 1 34 34 H 1.09003 * 109.47201 * 60.00604 * 3 2 1 35 35 H 1.08999 * 109.46916 * 305.36481 * 4 2 1 36 36 H 1.09000 * 109.46707 * 185.36739 * 4 2 1 37 37 H 1.08994 * 109.46587 * 149.71786 * 7 6 5 38 38 H 1.09001 * 109.46700 * 29.72154 * 7 6 5 39 39 H 1.09001 * 109.47785 * 59.99707 * 8 7 6 40 40 H 1.09011 * 109.47244 * 299.99859 * 8 7 6 41 41 H 0.97003 * 120.00211 * 179.97438 * 12 11 9 42 42 H 1.08997 * 109.59966 * 287.41074 * 21 20 19 43 43 H 1.09001 * 109.59595 * 47.86729 * 21 20 19 44 44 H 1.08999 * 109.37481 * 290.13602 * 22 21 20 45 45 H 1.08995 * 109.28653 * 170.42337 * 22 21 20 46 46 H 1.08998 * 109.47064 * 179.97438 * 24 23 22 47 47 H 1.09001 * 109.47210 * 299.97859 * 24 23 22 48 48 H 1.09000 * 109.46917 * 59.97714 * 24 23 22 49 49 H 1.09004 * 109.38236 * 293.82024 * 27 20 19 50 50 H 1.08995 * 109.38690 * 53.51096 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6601 -2.1347 1.1864 6 6 0.5645 -2.7212 1.7569 7 6 -0.4925 -2.0295 2.5789 8 6 -0.0917 -2.0601 4.0551 9 6 -1.1489 -1.3690 4.8771 10 1 -2.0195 -0.9495 4.3947 11 6 -1.0044 -1.2713 6.2447 12 7 0.0558 -1.7817 6.8321 13 14 -2.3146 -0.4140 7.2635 14 1 -3.3985 0.0691 6.3708 15 1 -2.8769 -1.3692 8.2518 16 1 -1.7103 0.7391 7.9779 17 7 0.6010 -3.9878 1.4538 18 7 1.6399 -4.2406 0.7407 19 6 2.3279 -3.1397 0.5494 20 7 3.5064 -3.0193 -0.1698 21 6 3.6864 -4.1601 -1.0822 22 6 4.8175 -3.8335 -2.0594 23 7 5.9927 -3.3700 -1.3275 24 6 7.2915 -3.3888 -2.0051 25 6 5.9364 -2.9288 -0.0665 26 8 6.9565 -2.5329 0.4566 27 6 4.6622 -2.9024 0.7293 28 1 -0.3633 -1.0238 -0.0883 29 1 -0.3633 0.4354 0.9308 30 1 -0.3633 0.5884 -0.8425 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6004 -0.2659 2.1366 36 1 3.1258 -0.6387 1.2985 37 1 -1.4457 -2.5421 2.4504 38 1 -0.5891 -0.9948 2.2499 39 1 0.8616 -1.5475 4.1836 40 1 0.0049 -3.0949 4.3840 41 1 0.1576 -1.7126 7.7942 42 1 3.9445 -5.0501 -0.5084 43 1 2.7640 -4.3343 -1.6361 44 1 4.4882 -3.0535 -2.7460 45 1 5.0739 -4.7289 -2.6256 46 1 8.0597 -3.0145 -1.3284 47 1 7.5329 -4.4101 -2.2997 48 1 7.2482 -2.7556 -2.8913 49 1 4.5988 -1.9638 1.2799 50 1 4.6583 -3.7343 1.4336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342829297.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:14 Heat of formation + Delta-G solvation = 27.250128 kcal Electronic energy + Delta-G solvation = -30412.257751 eV Core-core repulsion = 26475.111517 eV Total energy + Delta-G solvation = -3937.146234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.14479 -41.67118 -38.70671 -38.07808 -36.62422 -35.93412 -34.34472 -33.61577 -31.19665 -30.96839 -29.08083 -28.18164 -27.75128 -27.06728 -26.12331 -24.86749 -23.68149 -22.49617 -21.70399 -20.97722 -19.79442 -18.75930 -18.58705 -18.26890 -17.66164 -17.34346 -17.08466 -16.52485 -16.41812 -16.06784 -15.94468 -15.42396 -15.14341 -14.95899 -14.82784 -14.52776 -14.29537 -14.05256 -13.89848 -13.49490 -13.41819 -13.22392 -13.06999 -13.01119 -12.98257 -12.86009 -12.75375 -12.54354 -12.50434 -12.41264 -12.11115 -11.96636 -11.79296 -11.72426 -11.60944 -11.28519 -11.26411 -10.98368 -10.61358 -10.57593 -9.83436 -9.58278 -8.20525 -6.32586 0.63307 1.12221 1.31424 1.42465 1.44027 1.56470 1.70014 1.83785 2.39089 2.42375 3.14223 3.19687 3.43051 3.51741 3.58078 3.69634 3.77816 3.86950 3.94077 4.05360 4.12929 4.19200 4.29940 4.36163 4.44483 4.50170 4.58275 4.62705 4.65037 4.67559 4.74600 4.79186 4.81792 4.88731 4.93447 4.95560 4.97113 5.04389 5.14455 5.19150 5.29474 5.34548 5.39928 5.44590 5.48941 5.58753 5.78347 6.04437 6.16370 6.17078 6.83529 6.87216 7.37690 7.66662 8.91652 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.003019 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.287264 B = 9273.701116 C = 9606.674188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.139 4.139 4 C 0.105 3.895 5 N -0.459 5.459 6 C 0.211 3.789 7 C -0.019 4.019 8 C 0.043 3.957 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.255 1.255 15 H -0.284 1.284 16 H -0.279 1.279 17 N -0.329 5.329 18 N -0.339 5.339 19 C 0.338 3.662 20 N -0.434 5.434 21 C 0.048 3.952 22 C 0.125 3.875 23 N -0.601 5.601 24 C 0.070 3.930 25 C 0.530 3.470 26 O -0.583 6.583 27 C 0.044 3.956 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.098 0.902 39 H -0.007 1.007 40 H -0.018 1.018 41 H 0.263 0.737 42 H 0.057 0.943 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.113 0.887 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.049 2.729 -23.618 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.197 4.197 4 C -0.017 4.017 5 N -0.152 5.152 6 C -0.058 4.058 7 C -0.059 4.059 8 C 0.004 3.996 9 C -0.573 4.573 10 H 0.091 0.909 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.179 1.179 15 H -0.210 1.210 16 H -0.205 1.205 17 N -0.169 5.169 18 N -0.183 5.183 19 C -0.019 4.019 20 N -0.160 5.160 21 C -0.079 4.079 22 C 0.003 3.997 23 N -0.332 5.332 24 C -0.072 4.072 25 C 0.317 3.683 26 O -0.463 6.463 27 C -0.086 4.086 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.012 0.988 40 H 0.001 0.999 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.131 0.869 44 H 0.115 0.885 45 H 0.142 0.858 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.131 0.869 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.248 1.896 -23.599 25.798 hybrid contribution -0.103 0.613 1.815 1.919 sum 10.145 2.509 -21.784 24.161 Atomic orbital electron populations 1.21950 0.94800 1.01081 1.02981 1.21365 0.96430 0.97499 0.96061 1.21740 1.01501 0.93232 1.03191 1.22371 1.02269 0.75430 1.01617 1.46330 1.18906 1.10283 1.39649 1.25237 0.91438 0.90529 0.98598 1.20253 0.93028 0.99568 0.93009 1.18841 0.95786 0.95037 0.89887 1.21599 1.06818 1.36435 0.92490 0.90918 1.25971 0.97856 0.96282 0.99555 1.70124 1.29997 1.46786 1.10526 0.85386 0.79112 0.77992 0.78497 1.17855 1.21002 1.20451 1.73943 1.15745 1.12972 1.14200 1.74421 1.04678 1.21818 1.17416 1.22450 0.95972 0.84885 0.98614 1.59338 0.96422 1.44323 1.15912 1.22637 1.01511 0.89663 0.94091 1.21818 0.81862 1.02782 0.93275 1.47455 1.11193 1.62309 1.12271 1.21940 0.83615 1.03779 0.97819 1.19663 0.89140 0.76910 0.82610 1.90731 1.35725 1.49996 1.69864 1.22367 0.86374 1.05090 0.94788 0.94715 0.92186 0.90456 0.90181 0.91723 0.90550 0.92166 0.88775 0.88005 0.89396 0.88404 0.98837 0.99910 0.92855 0.92407 0.86935 0.88541 0.85763 0.91353 0.89609 0.89625 0.86889 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 7.86 71.98 0.57 -2.67 16 2 C -0.09 -1.86 3.12 -10.79 -0.03 -1.89 16 3 C -0.14 -2.12 9.19 71.98 0.66 -1.46 16 4 C 0.10 2.64 5.36 86.38 0.46 3.10 16 5 N -0.46 -14.57 2.53 -514.86 -1.30 -15.87 16 6 C 0.21 8.15 6.27 137.64 0.86 9.01 16 7 C -0.02 -0.76 5.12 29.85 0.15 -0.61 16 8 C 0.04 2.21 4.95 29.85 0.15 2.35 16 9 C -0.54 -29.01 9.11 25.60 0.23 -28.78 16 10 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 11 C 0.00 0.07 5.46 84.65 0.46 0.54 16 12 N -0.93 -56.42 13.29 21.44 0.28 -56.14 16 13 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 17 N -0.33 -13.98 12.18 -49.53 -0.60 -14.58 16 18 N -0.34 -12.65 11.45 -58.00 -0.66 -13.32 16 19 C 0.34 10.41 6.84 260.11 1.78 12.19 16 20 N -0.43 -9.89 4.75 -710.44 -3.37 -13.27 16 21 C 0.05 0.82 5.03 86.25 0.43 1.25 16 22 C 0.12 1.25 6.64 86.47 0.57 1.83 16 23 N -0.60 -9.54 3.23 -850.20 -2.74 -12.28 16 24 C 0.07 0.81 10.55 127.77 1.35 2.16 16 25 C 0.53 12.47 7.57 87.68 0.66 13.14 16 26 O -0.58 -17.99 16.07 -3.05 -0.05 -18.03 16 27 C 0.04 1.07 5.51 85.41 0.47 1.54 16 28 H 0.03 0.89 6.98 -2.39 -0.02 0.87 16 29 H 0.06 1.36 6.95 -2.39 -0.02 1.34 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 2.62 7.59 -2.39 -0.02 2.61 16 36 H 0.10 2.28 6.55 -2.39 -0.02 2.26 16 37 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.10 3.42 5.41 -2.39 -0.01 3.41 16 39 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H -0.02 -1.05 8.14 -2.38 -0.02 -1.06 16 41 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 43 H 0.11 1.89 7.98 -2.39 -0.02 1.87 16 44 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.12 0.49 8.13 -2.39 -0.02 0.47 16 46 H 0.07 1.16 6.67 -2.39 -0.02 1.14 16 47 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 48 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 49 H 0.11 2.78 6.57 -2.38 -0.02 2.76 16 50 H 0.07 2.00 8.09 -2.39 -0.02 1.98 16 Total: -1.00 -75.94 397.54 3.29 -72.65 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.93 Total: 14.08 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 8.79 Total: 11.70 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -8.40 Total: -125.45 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.05 Total: -18.03 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -75.94 3.29 -72.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342829297.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.903 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds