Wall clock time and date at job start Tue Mar 31 2020 18:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 C 1.53001 * 109.47265 * 119.99894 * 2 1 3 5 5 N 1.46503 * 109.47083 * 64.79886 * 4 2 1 6 6 C 1.36733 * 127.13828 * 84.42790 * 5 4 2 7 7 C 1.50701 * 126.34550 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.47025 * 90.00582 * 7 6 5 9 9 C 1.50699 * 109.47251 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99991 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99873 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99914 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99823 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46923 * 89.99915 * 13 11 9 15 15 H 1.48497 * 109.47102 * 210.00184 * 13 11 9 16 16 H 1.48507 * 109.47074 * 330.00320 * 13 11 9 17 17 N 1.30291 * 107.30566 * 179.97438 * 6 5 4 18 18 N 1.28527 * 110.05225 * 359.97438 * 17 6 5 19 19 C 1.31220 * 109.86060 * 359.74446 * 18 17 6 20 20 N 1.38585 * 126.47082 * 180.25680 * 19 18 17 21 21 C 1.45557 * 110.99904 * 303.99274 * 20 19 18 22 22 C 1.53056 * 110.85775 * 59.45825 * 21 20 19 23 23 N 1.47253 * 108.55924 * 85.73976 * 22 21 20 24 24 C 1.33634 * 120.09722 * 289.34483 * 23 22 21 25 25 O 1.21278 * 120.04973 * 180.24434 * 24 23 22 26 26 C 1.51488 * 119.90265 * 0.22748 * 24 23 22 27 27 C 1.45589 * 110.99831 * 74.58133 * 20 19 18 28 28 H 1.08990 * 109.47321 * 301.63564 * 1 2 3 29 29 H 1.08999 * 109.47152 * 61.64379 * 1 2 3 30 30 H 1.09005 * 109.46859 * 181.63591 * 1 2 3 31 31 H 1.08997 * 109.47303 * 240.00320 * 2 1 3 32 32 H 1.08998 * 109.47207 * 59.99675 * 3 2 1 33 33 H 1.08993 * 109.47456 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46887 * 299.99933 * 3 2 1 35 35 H 1.08998 * 109.46943 * 184.79688 * 4 2 1 36 36 H 1.08997 * 109.47025 * 304.79470 * 4 2 1 37 37 H 1.08999 * 109.46808 * 210.00224 * 7 6 5 38 38 H 1.09000 * 109.47276 * 330.00168 * 7 6 5 39 39 H 1.09002 * 109.46682 * 299.99893 * 8 7 6 40 40 H 1.09001 * 109.47090 * 59.99269 * 8 7 6 41 41 H 0.97006 * 119.99720 * 179.97438 * 12 11 9 42 42 H 1.09004 * 109.19854 * 179.81525 * 21 20 19 43 43 H 1.08996 * 109.20245 * 299.09662 * 21 20 19 44 44 H 1.09002 * 109.62244 * 205.45796 * 22 21 20 45 45 H 1.08998 * 109.61894 * 326.01249 * 22 21 20 46 46 H 0.96998 * 119.95539 * 109.32971 * 23 22 21 47 47 H 1.08998 * 109.68434 * 189.73970 * 26 24 23 48 48 H 1.09003 * 109.68102 * 310.29126 * 26 24 23 49 49 H 1.09003 * 109.23408 * 60.60460 * 27 20 19 50 50 H 1.09000 * 109.23143 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6483 -2.1318 1.1929 6 6 2.3056 -3.1462 0.5537 7 6 3.5843 -3.0248 -0.2345 8 6 4.7794 -3.2439 0.6954 9 6 6.0581 -3.1232 -0.0930 10 1 6.0220 -2.9109 -1.1513 11 6 7.2740 -3.2826 0.5371 12 7 7.3179 -3.5406 1.8259 13 14 8.8590 -3.1322 -0.4399 14 1 9.3173 -1.7198 -0.4254 15 1 9.9006 -3.9970 0.1704 16 1 8.6191 -3.5604 -1.8415 17 7 1.6222 -4.2373 0.7534 18 7 0.5860 -3.9833 1.4702 19 6 0.5555 -2.7070 1.7732 20 7 -0.4068 -2.0640 2.5355 21 6 -1.7366 -2.2736 1.9818 22 6 -2.0770 -3.7650 1.9313 23 7 -2.6338 -4.1631 3.2351 24 6 -1.8428 -4.2263 4.3104 25 8 -2.3014 -4.5585 5.3829 26 6 -0.3725 -3.8827 4.1877 27 6 -0.2471 -2.3757 3.9486 28 1 -0.3633 0.5390 0.8749 29 1 -0.3633 0.4881 -0.9043 30 1 -0.3633 -1.0273 0.0293 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 3.1266 -0.6474 1.2932 36 1 1.6083 -0.2594 2.1371 37 1 3.5965 -3.7753 -1.0249 38 1 3.6455 -2.0304 -0.6768 39 1 4.7671 -2.4933 1.4857 40 1 4.7181 -4.2383 1.1377 41 1 8.1735 -3.6531 2.2692 42 1 -2.4691 -1.7595 2.6041 43 1 -1.7735 -1.8631 0.9728 44 1 -2.8133 -3.9461 1.1482 45 1 -1.1735 -4.3399 1.7280 46 1 -3.5760 -4.3795 3.3137 47 1 0.1456 -4.1526 5.1079 48 1 0.0624 -4.4253 3.3483 49 1 0.7350 -2.0398 4.2817 50 1 -1.0163 -1.8562 4.5201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342905154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:04 Heat of formation + Delta-G solvation = 49.070523 kcal Electronic energy + Delta-G solvation = -30947.398798 eV Core-core repulsion = 27011.198767 eV Total energy + Delta-G solvation = -3936.200031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.98262 -40.37229 -37.89686 -37.02837 -34.81461 -34.18954 -33.12244 -31.98763 -31.57795 -28.99763 -27.97321 -27.37303 -26.74617 -25.47003 -24.65302 -23.10904 -22.11991 -20.78463 -20.47701 -19.86753 -19.79349 -17.65250 -17.27039 -16.74872 -16.47420 -16.18264 -15.87840 -15.29071 -15.12408 -14.88126 -14.53785 -14.11742 -13.89406 -13.74076 -13.41410 -13.25831 -13.11389 -12.90423 -12.83007 -12.42589 -12.39354 -12.19153 -12.09088 -11.84447 -11.72672 -11.49773 -11.36939 -11.12399 -11.03990 -10.95958 -10.81148 -10.68864 -10.51310 -10.07119 -9.97563 -9.85932 -9.73340 -9.35581 -9.27380 -8.76324 -8.51194 -8.45888 -6.10233 -4.14636 1.93151 2.38273 2.55995 3.06353 3.19235 3.25904 3.33582 3.36241 3.55353 4.26913 4.36769 4.52137 4.58191 4.65330 4.70309 4.79902 4.88496 4.93146 5.04336 5.10058 5.12814 5.21025 5.26145 5.30758 5.39400 5.42250 5.48629 5.54155 5.58151 5.66160 5.69470 5.72636 5.89420 5.91398 6.03891 6.07851 6.13245 6.26687 6.27971 6.37330 6.57555 6.61406 6.68949 6.86617 7.12672 7.33664 7.48526 7.62008 7.86441 8.14661 8.23766 8.91271 8.99248 9.50487 11.00728 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.003418 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.587962 B = 8190.142087 C = 9436.320083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C -0.144 4.144 4 C 0.113 3.887 5 N -0.457 5.457 6 C 0.224 3.776 7 C -0.033 4.033 8 C 0.033 3.967 9 C -0.525 4.525 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 N -0.299 5.299 18 N -0.319 5.319 19 C 0.328 3.672 20 N -0.475 5.475 21 C 0.057 3.943 22 C 0.039 3.961 23 N -0.723 5.723 24 C 0.524 3.476 25 O -0.557 6.557 26 C -0.195 4.195 27 C 0.084 3.916 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.262 0.738 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.137 0.863 46 H 0.396 0.604 47 H 0.102 0.898 48 H 0.126 0.874 49 H 0.091 0.909 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.102 9.640 -1.760 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.202 4.202 4 C -0.010 4.010 5 N -0.148 5.148 6 C -0.043 4.043 7 C -0.073 4.073 8 C -0.006 4.006 9 C -0.563 4.563 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 N -0.137 5.137 18 N -0.163 5.163 19 C -0.028 4.028 20 N -0.199 5.199 21 C -0.071 4.071 22 C -0.087 4.087 23 N -0.375 5.375 24 C 0.311 3.689 25 O -0.436 6.436 26 C -0.237 4.237 27 C -0.044 4.044 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.154 0.846 46 H 0.232 0.768 47 H 0.121 0.879 48 H 0.143 0.857 49 H 0.110 0.890 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.338 8.534 -1.154 20.259 hybrid contribution 0.709 0.638 -0.258 0.988 sum -17.629 9.172 -1.412 19.922 Atomic orbital electron populations 1.21875 0.94613 1.01854 1.01733 1.21454 0.96741 0.96846 0.97806 1.21756 1.01756 0.94550 1.02114 1.22038 1.02296 0.76650 1.00003 1.46359 1.19542 1.10132 1.38808 1.25600 0.97918 0.83019 0.97811 1.20491 0.86642 1.02518 0.97675 1.19064 0.89730 0.97907 0.93861 1.21115 0.90543 1.49384 0.95287 0.92305 1.24998 0.99286 0.94987 0.94877 1.69964 1.25771 1.48175 1.09056 0.86571 0.83082 0.77960 0.80271 1.20656 1.21167 1.19717 1.74060 1.01940 1.22392 1.15325 1.73933 1.16228 1.10529 1.15619 1.22022 0.90979 0.88654 1.01115 1.56536 1.02598 1.58738 1.02004 1.22381 0.87171 0.96060 1.01483 1.23419 1.03941 0.97034 0.84310 1.45995 1.12344 1.69739 1.09407 1.20612 0.89234 0.75838 0.83245 1.90727 1.76839 1.48345 1.27653 1.23025 0.93594 0.99558 1.07485 1.21777 1.04145 0.93257 0.85186 0.92079 0.92827 0.92787 0.90383 0.92385 0.91816 0.92132 0.88023 0.88393 0.89254 0.91085 0.96793 0.95628 0.92826 0.89125 0.89026 0.89420 0.84597 0.76800 0.87930 0.85681 0.89044 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.99 37.16 0.33 -0.92 16 2 C -0.11 -1.06 3.13 -90.62 -0.28 -1.35 16 3 C -0.14 -1.18 9.19 37.16 0.34 -0.83 16 4 C 0.11 1.31 5.25 -4.04 -0.02 1.29 16 5 N -0.46 -6.54 2.50 -114.09 -0.29 -6.82 16 6 C 0.22 3.94 7.32 -154.02 -1.13 2.81 16 7 C -0.03 -0.62 5.47 -27.88 -0.15 -0.78 16 8 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 9 C -0.53 -13.76 9.11 -34.44 -0.31 -14.07 16 10 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 13 Si 0.89 20.62 29.54 -169.99 -5.02 15.59 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 17 N -0.30 -5.64 12.18 32.99 0.40 -5.24 16 18 N -0.32 -5.16 6.91 30.31 0.21 -4.95 16 19 C 0.33 4.47 4.75 -318.87 -1.51 2.96 16 20 N -0.47 -4.98 4.48 -176.53 -0.79 -5.77 16 21 C 0.06 0.49 5.52 -4.52 -0.02 0.47 16 22 C 0.04 0.37 6.36 -3.60 -0.02 0.35 16 23 N -0.72 -7.45 5.31 -59.74 -0.32 -7.76 16 24 C 0.52 7.00 7.10 -11.11 -0.08 6.92 16 25 O -0.56 -9.48 17.93 5.56 0.10 -9.38 16 26 C -0.19 -2.49 5.49 -27.44 -0.15 -2.64 16 27 C 0.08 0.89 5.57 -4.48 -0.02 0.87 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.54 4.69 -51.93 -0.24 0.30 16 31 H 0.08 0.86 7.87 -51.93 -0.41 0.46 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 36 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 38 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 43 H 0.09 0.73 6.31 -51.93 -0.33 0.40 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.14 1.72 3.82 -52.02 -0.20 1.52 16 46 H 0.40 3.47 8.92 -40.82 -0.36 3.10 16 47 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 48 H 0.13 1.85 4.49 -51.93 -0.23 1.62 16 49 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -32.13 388.61 -10.42 -42.54 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.03 Total: 3.66 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.27 Total: -2.74 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.05 Total: -55.54 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.10 Total: -9.38 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.13 -10.42 -42.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342905154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.615 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds