Wall clock time and date at job start Tue Mar 31 2020 18:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 C 1.53001 * 109.47265 * 119.99894 * 2 1 3 5 5 N 1.46503 * 109.47083 * 64.79886 * 4 2 1 6 6 C 1.36733 * 127.13828 * 84.42790 * 5 4 2 7 7 C 1.50701 * 126.34550 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.47025 * 90.00582 * 7 6 5 9 9 C 1.50699 * 109.47251 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99991 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99873 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99914 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99823 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46923 * 89.99915 * 13 11 9 15 15 H 1.48497 * 109.47102 * 210.00184 * 13 11 9 16 16 H 1.48507 * 109.47074 * 330.00320 * 13 11 9 17 17 N 1.30291 * 107.30566 * 179.97438 * 6 5 4 18 18 N 1.28527 * 110.05225 * 359.97438 * 17 6 5 19 19 C 1.31220 * 109.86060 * 359.74446 * 18 17 6 20 20 N 1.38585 * 126.47082 * 180.25680 * 19 18 17 21 21 C 1.45557 * 110.99904 * 303.99274 * 20 19 18 22 22 C 1.53056 * 110.85775 * 59.45825 * 21 20 19 23 23 N 1.47253 * 108.55924 * 85.73976 * 22 21 20 24 24 C 1.33634 * 120.09722 * 289.34483 * 23 22 21 25 25 O 1.21278 * 120.04973 * 180.24434 * 24 23 22 26 26 C 1.51488 * 119.90265 * 0.22748 * 24 23 22 27 27 C 1.45589 * 110.99831 * 74.58133 * 20 19 18 28 28 H 1.08990 * 109.47321 * 301.63564 * 1 2 3 29 29 H 1.08999 * 109.47152 * 61.64379 * 1 2 3 30 30 H 1.09005 * 109.46859 * 181.63591 * 1 2 3 31 31 H 1.08997 * 109.47303 * 240.00320 * 2 1 3 32 32 H 1.08998 * 109.47207 * 59.99675 * 3 2 1 33 33 H 1.08993 * 109.47456 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46887 * 299.99933 * 3 2 1 35 35 H 1.08998 * 109.46943 * 184.79688 * 4 2 1 36 36 H 1.08997 * 109.47025 * 304.79470 * 4 2 1 37 37 H 1.08999 * 109.46808 * 210.00224 * 7 6 5 38 38 H 1.09000 * 109.47276 * 330.00168 * 7 6 5 39 39 H 1.09002 * 109.46682 * 299.99893 * 8 7 6 40 40 H 1.09001 * 109.47090 * 59.99269 * 8 7 6 41 41 H 0.97006 * 119.99720 * 179.97438 * 12 11 9 42 42 H 1.09004 * 109.19854 * 179.81525 * 21 20 19 43 43 H 1.08996 * 109.20245 * 299.09662 * 21 20 19 44 44 H 1.09002 * 109.62244 * 205.45796 * 22 21 20 45 45 H 1.08998 * 109.61894 * 326.01249 * 22 21 20 46 46 H 0.96998 * 119.95539 * 109.32971 * 23 22 21 47 47 H 1.08998 * 109.68434 * 189.73970 * 26 24 23 48 48 H 1.09003 * 109.68102 * 310.29126 * 26 24 23 49 49 H 1.09003 * 109.23408 * 60.60460 * 27 20 19 50 50 H 1.09000 * 109.23143 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6483 -2.1318 1.1929 6 6 2.3056 -3.1462 0.5537 7 6 3.5843 -3.0248 -0.2345 8 6 4.7794 -3.2439 0.6954 9 6 6.0581 -3.1232 -0.0930 10 1 6.0220 -2.9109 -1.1513 11 6 7.2740 -3.2826 0.5371 12 7 7.3179 -3.5406 1.8259 13 14 8.8590 -3.1322 -0.4399 14 1 9.3173 -1.7198 -0.4254 15 1 9.9006 -3.9970 0.1704 16 1 8.6191 -3.5604 -1.8415 17 7 1.6222 -4.2373 0.7534 18 7 0.5860 -3.9833 1.4702 19 6 0.5555 -2.7070 1.7732 20 7 -0.4068 -2.0640 2.5355 21 6 -1.7366 -2.2736 1.9818 22 6 -2.0770 -3.7650 1.9313 23 7 -2.6338 -4.1631 3.2351 24 6 -1.8428 -4.2263 4.3104 25 8 -2.3014 -4.5585 5.3829 26 6 -0.3725 -3.8827 4.1877 27 6 -0.2471 -2.3757 3.9486 28 1 -0.3633 0.5390 0.8749 29 1 -0.3633 0.4881 -0.9043 30 1 -0.3633 -1.0273 0.0293 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 3.1266 -0.6474 1.2932 36 1 1.6083 -0.2594 2.1371 37 1 3.5965 -3.7753 -1.0249 38 1 3.6455 -2.0304 -0.6768 39 1 4.7671 -2.4933 1.4857 40 1 4.7181 -4.2383 1.1377 41 1 8.1735 -3.6531 2.2692 42 1 -2.4691 -1.7595 2.6041 43 1 -1.7735 -1.8631 0.9728 44 1 -2.8133 -3.9461 1.1482 45 1 -1.1735 -4.3399 1.7280 46 1 -3.5760 -4.3795 3.3137 47 1 0.1456 -4.1526 5.1079 48 1 0.0624 -4.4253 3.3483 49 1 0.7350 -2.0398 4.2817 50 1 -1.0163 -1.8562 4.5201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342905154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:03 Heat of formation + Delta-G solvation = 29.422590 kcal Electronic energy + Delta-G solvation = -30948.250797 eV Core-core repulsion = 27011.198767 eV Total energy + Delta-G solvation = -3937.052029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.18353 -41.38486 -38.94147 -37.95625 -36.07255 -35.66423 -34.30934 -33.53913 -32.70821 -30.41852 -28.93977 -28.07755 -27.74948 -27.17334 -25.58595 -24.17853 -23.74763 -21.90881 -21.56693 -20.92483 -20.81215 -18.65990 -18.50039 -18.29184 -17.74265 -17.28482 -16.90101 -16.51980 -16.22711 -16.04176 -15.84749 -15.13755 -14.94702 -14.91004 -14.80888 -14.50003 -14.23821 -14.02427 -13.84761 -13.73883 -13.33401 -13.16377 -13.01011 -12.87542 -12.83302 -12.76903 -12.55043 -12.51993 -12.33862 -12.05913 -12.05264 -11.82046 -11.78717 -11.65371 -11.45572 -11.28458 -11.01890 -10.83379 -10.55355 -10.38109 -9.91317 -9.64286 -8.18781 -6.30485 0.74536 1.28448 1.44077 1.45841 1.49598 1.56423 1.76705 2.29279 2.43292 2.60129 3.16077 3.33374 3.42733 3.64350 3.78035 3.82423 3.86456 3.95051 4.08020 4.14554 4.15476 4.28227 4.33564 4.35413 4.51404 4.61127 4.64101 4.68193 4.69679 4.72774 4.76772 4.86610 4.92914 4.96024 4.98632 5.04766 5.12996 5.20699 5.26315 5.43313 5.45774 5.47982 5.61341 5.63587 5.71023 5.80562 5.83942 6.15802 6.18299 6.26258 6.85581 7.16383 7.39687 7.72777 8.92992 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.003418 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.587962 B = 8190.142087 C = 9436.320083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.139 4.139 4 C 0.108 3.892 5 N -0.451 5.451 6 C 0.206 3.794 7 C -0.016 4.016 8 C 0.044 3.956 9 C -0.537 4.537 10 H 0.071 0.929 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.964 3.036 14 H -0.269 1.269 15 H -0.289 1.289 16 H -0.261 1.261 17 N -0.332 5.332 18 N -0.333 5.333 19 C 0.348 3.652 20 N -0.463 5.463 21 C 0.056 3.944 22 C 0.039 3.961 23 N -0.706 5.706 24 C 0.524 3.476 25 O -0.598 6.598 26 C -0.193 4.193 27 C 0.087 3.913 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.092 0.908 39 H -0.005 1.005 40 H -0.017 1.017 41 H 0.262 0.738 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.407 0.593 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.091 0.909 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.574 12.010 -3.036 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C -0.197 4.197 4 C -0.013 4.013 5 N -0.142 5.142 6 C -0.063 4.063 7 C -0.056 4.056 8 C 0.006 3.994 9 C -0.575 4.575 10 H 0.089 0.911 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.788 3.212 14 H -0.195 1.195 15 H -0.215 1.215 16 H -0.185 1.185 17 N -0.171 5.171 18 N -0.177 5.177 19 C -0.008 4.008 20 N -0.187 5.187 21 C -0.071 4.071 22 C -0.086 4.086 23 N -0.357 5.357 24 C 0.312 3.688 25 O -0.480 6.480 26 C -0.235 4.235 27 C -0.040 4.040 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.013 0.987 40 H 0.001 0.999 41 H 0.071 0.929 42 H 0.133 0.867 43 H 0.124 0.876 44 H 0.135 0.865 45 H 0.126 0.874 46 H 0.244 0.756 47 H 0.113 0.887 48 H 0.123 0.877 49 H 0.109 0.891 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.838 10.928 -2.484 22.784 hybrid contribution 1.074 -0.106 0.173 1.093 sum -18.764 10.822 -2.311 21.784 Atomic orbital electron populations 1.21820 0.93346 1.01263 1.02946 1.21423 0.97713 0.97323 0.95868 1.21729 1.01159 0.93485 1.03343 1.22284 1.01595 0.75396 1.02051 1.46460 1.19197 1.10639 1.37948 1.25168 0.98072 0.83942 0.99131 1.20116 0.85364 1.03594 0.96484 1.18819 0.91816 0.94736 0.94058 1.21586 0.91429 1.48472 0.96042 0.91064 1.25935 1.03124 0.94638 0.95783 1.70113 1.26594 1.49658 1.10969 0.85465 0.78392 0.78273 0.79045 1.19469 1.21490 1.18467 1.73983 1.03131 1.23587 1.16425 1.74024 1.15727 1.11926 1.16041 1.22342 0.90760 0.88023 0.99648 1.56761 1.02838 1.57566 1.01519 1.22552 0.86218 0.95559 1.02791 1.23428 1.03639 0.97249 0.84314 1.45904 1.12622 1.68264 1.08944 1.20648 0.89461 0.75458 0.83258 1.90710 1.77492 1.50501 1.29329 1.22973 0.93296 1.00978 1.06278 1.21826 1.05091 0.91814 0.85317 0.90810 0.91677 0.94150 0.91930 0.91070 0.92776 0.90972 0.89727 0.86506 0.89490 0.88946 0.98708 0.99852 0.92887 0.86687 0.87611 0.86523 0.87391 0.75574 0.88656 0.87653 0.89087 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.99 71.98 0.65 -1.31 16 2 C -0.10 -1.82 3.13 -10.79 -0.03 -1.86 16 3 C -0.14 -1.95 9.19 71.98 0.66 -1.29 16 4 C 0.11 2.40 5.25 86.38 0.45 2.85 16 5 N -0.45 -12.77 2.50 -514.85 -1.29 -14.06 16 6 C 0.21 7.39 7.32 137.64 1.01 8.40 16 7 C -0.02 -0.61 5.47 29.85 0.16 -0.45 16 8 C 0.04 2.20 4.95 29.85 0.15 2.35 16 9 C -0.54 -28.58 9.11 25.60 0.23 -28.35 16 10 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 11 C 0.00 0.18 5.46 84.66 0.46 0.64 16 12 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 13 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 14 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 15 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 N -0.33 -12.94 12.18 -49.54 -0.60 -13.55 16 18 N -0.33 -10.89 6.91 -58.00 -0.40 -11.29 16 19 C 0.35 9.22 4.75 260.11 1.23 10.45 16 20 N -0.46 -8.66 4.48 -712.40 -3.19 -11.85 16 21 C 0.06 0.78 5.52 86.58 0.48 1.26 16 22 C 0.04 0.65 6.36 86.25 0.55 1.20 16 23 N -0.71 -13.23 5.31 -461.94 -2.45 -15.69 16 24 C 0.52 13.62 7.10 88.09 0.62 14.24 16 25 O -0.60 -20.24 17.93 -3.02 -0.05 -20.30 16 26 C -0.19 -4.90 5.49 30.13 0.17 -4.73 16 27 C 0.09 1.70 5.57 86.58 0.48 2.18 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 0.69 4.69 -2.38 -0.01 0.68 16 31 H 0.06 1.31 7.87 -2.39 -0.02 1.29 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 36 H 0.12 2.13 8.10 -2.39 -0.02 2.11 16 37 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.09 3.09 7.70 -2.39 -0.02 3.07 16 39 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 42 H 0.12 1.16 8.05 -2.38 -0.02 1.14 16 43 H 0.11 1.28 6.31 -2.39 -0.02 1.26 16 44 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.11 2.63 3.82 -2.50 -0.01 2.62 16 46 H 0.41 6.22 8.92 -92.71 -0.83 5.40 16 47 H 0.09 2.52 8.13 -2.39 -0.02 2.50 16 48 H 0.11 3.19 4.49 -2.39 -0.01 3.18 16 49 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.11 1.78 7.87 -2.39 -0.02 1.76 16 Total: -1.00 -72.53 388.61 1.72 -70.81 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.13 Total: 21.10 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 7.28 Total: 5.59 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -7.65 Total: -121.59 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -72.53 1.72 -70.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342905154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.230 kcal (2) G-P(sol) polarization free energy of solvation -72.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds