Wall clock time and date at job start Tue Mar 31 2020 18:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46775 * 2 1 4 4 C 1.52992 * 109.47221 * 120.00041 * 2 1 3 5 5 N 1.46501 * 109.47210 * 65.86141 * 4 2 1 6 6 C 1.36738 * 127.13382 * 264.06529 * 5 4 2 7 7 C 1.50707 * 126.34830 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.46993 * 269.71635 * 7 6 5 9 9 C 1.50697 * 109.46970 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99942 * 359.72157 * 9 8 7 11 11 C 1.37882 * 119.99797 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00240 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99855 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47175 * 89.99838 * 13 11 9 15 15 H 1.48506 * 109.47253 * 209.99848 * 13 11 9 16 16 H 1.48505 * 109.47162 * 329.99745 * 13 11 9 17 17 N 1.30298 * 107.30618 * 179.72863 * 6 5 4 18 18 N 1.28527 * 110.05035 * 0.26449 * 17 6 5 19 19 C 1.31210 * 109.86057 * 359.97438 * 18 17 6 20 20 N 1.38586 * 126.47377 * 180.02562 * 19 18 17 21 21 C 1.45758 * 110.99936 * 21.69686 * 20 19 18 22 22 C 1.51679 * 113.93954 * 167.26532 * 21 20 19 23 23 C 1.53115 * 110.75343 * 66.77292 * 22 21 20 24 24 N 1.47249 * 108.40035 * 274.40983 * 23 22 21 25 25 C 1.33614 * 119.84613 * 69.99375 * 24 23 22 26 26 O 1.21279 * 119.88201 * 180.53655 * 25 24 23 27 27 C 1.46883 * 110.99899 * 255.87862 * 20 19 18 28 28 H 1.09002 * 109.46803 * 176.07159 * 1 2 3 29 29 H 1.08993 * 109.47101 * 296.07866 * 1 2 3 30 30 H 1.09001 * 109.47001 * 56.07860 * 1 2 3 31 31 H 1.08999 * 109.47108 * 240.00294 * 2 1 3 32 32 H 1.09001 * 109.46971 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47766 * 300.00050 * 3 2 1 34 34 H 1.08999 * 109.47062 * 60.00266 * 3 2 1 35 35 H 1.08998 * 109.47432 * 305.86041 * 4 2 1 36 36 H 1.09001 * 109.47098 * 185.85367 * 4 2 1 37 37 H 1.09002 * 109.46969 * 149.71621 * 7 6 5 38 38 H 1.08999 * 109.46847 * 29.71688 * 7 6 5 39 39 H 1.08997 * 109.46930 * 59.99535 * 8 7 6 40 40 H 1.09001 * 109.47113 * 300.00208 * 8 7 6 41 41 H 0.96993 * 120.00222 * 180.02562 * 12 11 9 42 42 H 1.09001 * 108.59283 * 288.42481 * 21 20 19 43 43 H 1.09001 * 108.59039 * 46.11620 * 21 20 19 44 44 H 1.08999 * 109.22244 * 306.44181 * 22 21 20 45 45 H 1.09001 * 109.18558 * 187.07457 * 22 21 20 46 46 H 1.09001 * 109.68161 * 154.68523 * 23 22 21 47 47 H 1.09001 * 109.67856 * 34.13854 * 23 22 21 48 48 H 0.96997 * 120.07810 * 249.96820 * 24 23 22 49 49 H 1.08990 * 109.59996 * 330.55218 * 27 20 19 50 50 H 1.09000 * 109.60381 * 90.87602 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6703 -2.1371 1.1807 6 6 0.5790 -2.7337 1.7490 7 6 -0.4829 -2.0530 2.5738 8 6 -0.0818 -2.0866 4.0499 9 6 -1.1433 -1.4054 4.8745 10 1 -2.0144 -0.9860 4.3934 11 6 -0.9992 -1.3120 6.2426 12 7 0.0643 -1.8179 6.8279 13 14 -2.3153 -0.4681 7.2649 14 1 -3.3288 -1.4671 7.6892 15 1 -1.6922 0.1454 8.4652 16 1 -2.9712 0.5883 6.4530 17 7 0.6245 -3.9989 1.4408 18 7 1.6652 -4.2414 0.7267 19 6 2.3447 -3.1347 0.5390 20 7 3.5221 -3.0028 -0.1800 21 6 3.6804 -4.0982 -1.1285 22 6 4.7735 -3.8703 -2.1551 23 6 6.1510 -3.8561 -1.4868 24 7 6.4160 -2.4929 -0.9970 25 6 5.7232 -2.0125 0.0396 26 8 5.9341 -0.8863 0.4373 27 6 4.6758 -2.8687 0.7192 28 1 -0.3633 -1.0253 -0.0704 29 1 -0.3633 0.4517 0.9230 30 1 -0.3633 0.5735 -0.8528 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9565 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.5936 -0.2716 2.1361 36 1 3.1250 -0.6313 1.3031 37 1 -1.4325 -2.5719 2.4434 38 1 -0.5870 -1.0177 2.2490 39 1 0.8679 -1.5678 4.1802 40 1 0.0224 -3.1219 4.3746 41 1 0.1655 -1.7525 7.7903 42 1 3.9090 -5.0081 -0.5735 43 1 2.7359 -4.2430 -1.6529 44 1 4.6057 -2.9147 -2.6518 45 1 4.7420 -4.6698 -2.8953 46 1 6.9137 -4.1402 -2.2118 47 1 6.1605 -4.5550 -0.6504 48 1 7.0920 -1.9452 -1.4257 49 1 4.3617 -2.3936 1.6484 50 1 5.0887 -3.8544 0.9337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343562045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:00 Heat of formation + Delta-G solvation = 36.100474 kcal Electronic energy + Delta-G solvation = -30771.787409 eV Core-core repulsion = 26835.024955 eV Total energy + Delta-G solvation = -3936.762454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.73324 -40.43745 -37.72679 -36.90663 -35.67571 -34.06491 -33.04922 -32.04699 -31.51510 -29.17374 -27.56223 -27.14327 -26.68928 -25.75485 -25.07956 -22.39402 -21.75278 -21.08081 -20.31354 -20.08275 -19.69238 -17.79479 -17.44407 -17.01569 -16.50604 -16.13335 -15.85154 -15.30643 -14.91355 -14.55070 -14.49103 -14.29263 -13.91741 -13.86525 -13.65153 -13.47184 -13.13494 -12.92725 -12.85330 -12.32234 -12.27629 -12.11168 -11.92163 -11.74263 -11.54066 -11.43464 -11.34320 -11.17608 -10.99668 -10.88344 -10.74179 -10.67530 -10.56172 -10.23856 -9.94809 -9.85830 -9.66906 -9.47082 -9.23923 -9.16458 -8.40532 -8.13543 -6.04962 -4.09074 1.89707 2.24788 2.63243 2.94707 3.23136 3.30546 3.37084 3.39427 3.62723 4.19385 4.37235 4.41654 4.43731 4.58519 4.67691 4.77735 4.88573 4.91439 4.97164 5.03555 5.08665 5.24269 5.28077 5.30408 5.31396 5.47352 5.50435 5.50811 5.64640 5.69395 5.71800 5.83750 5.85473 5.89804 6.04081 6.17507 6.22027 6.26263 6.42701 6.44426 6.49745 6.53833 6.68045 6.88128 6.90682 7.38462 7.55634 7.68541 7.92221 7.93229 8.29778 8.96898 9.14402 9.55622 11.06148 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.003216 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.289227 B = 8705.390442 C = 8961.090272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C -0.144 4.144 4 C 0.110 3.890 5 N -0.464 5.464 6 C 0.222 3.778 7 C -0.036 4.036 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.273 1.273 17 N -0.297 5.297 18 N -0.315 5.315 19 C 0.325 3.675 20 N -0.448 5.448 21 C 0.070 3.930 22 C -0.139 4.139 23 C 0.103 3.897 24 N -0.722 5.722 25 C 0.534 3.466 26 O -0.538 6.538 27 C 0.040 3.960 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.262 0.738 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.402 0.598 49 H 0.106 0.894 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.501 -0.572 -20.407 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.122 4.122 3 C -0.201 4.201 4 C -0.012 4.012 5 N -0.156 5.156 6 C -0.045 4.045 7 C -0.076 4.076 8 C -0.007 4.007 9 C -0.562 4.562 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.721 3.279 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.198 1.198 17 N -0.136 5.136 18 N -0.160 5.160 19 C -0.031 4.031 20 N -0.174 5.174 21 C -0.057 4.057 22 C -0.178 4.178 23 C -0.021 4.021 24 N -0.376 5.376 25 C 0.319 3.681 26 O -0.414 6.414 27 C -0.090 4.090 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.239 0.761 49 H 0.124 0.876 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.161 -1.149 -20.275 23.670 hybrid contribution 0.151 1.208 0.906 1.518 sum 12.311 0.059 -19.369 22.950 Atomic orbital electron populations 1.21974 0.94490 1.02105 1.02393 1.21387 0.96700 0.96608 0.97538 1.21755 1.01346 0.94743 1.02299 1.22097 1.02054 0.76596 1.00491 1.46254 1.19812 1.09287 1.40288 1.25566 0.90581 0.90504 0.97846 1.20571 0.92738 0.98169 0.96144 1.19072 0.96853 0.98201 0.86527 1.21124 1.06031 1.37159 0.91870 0.92294 1.25003 0.95623 0.95543 0.98029 1.69965 1.27544 1.45300 1.10228 0.86570 0.81756 0.79728 0.79814 1.20540 1.21249 1.19784 1.74035 1.14210 1.12195 1.13166 1.74498 1.04608 1.20378 1.16487 1.21947 0.95357 0.85707 1.00088 1.57289 0.97713 1.46878 1.15498 1.21580 1.00795 0.90274 0.93074 1.21936 0.93482 1.04273 0.98143 1.21902 0.97494 0.83243 0.99467 1.45969 1.40834 1.17141 1.33622 1.20219 0.81313 0.86874 0.79703 1.90770 1.67517 1.19138 1.63937 1.22595 0.89563 1.00924 0.95929 0.92649 0.91554 0.92503 0.90569 0.92201 0.92256 0.92027 0.87749 0.88785 0.89335 0.90724 0.96803 0.95671 0.92870 0.92636 0.89296 0.90046 0.89041 0.88987 0.90527 0.76122 0.87552 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 7.88 37.16 0.29 -1.63 16 2 C -0.10 -1.28 3.12 -90.62 -0.28 -1.56 16 3 C -0.14 -1.55 9.19 37.16 0.34 -1.20 16 4 C 0.11 1.60 5.35 -4.05 -0.02 1.58 16 5 N -0.46 -7.78 2.53 -114.09 -0.29 -8.07 16 6 C 0.22 4.35 6.28 -154.01 -0.97 3.38 16 7 C -0.04 -0.74 5.10 -27.88 -0.14 -0.88 16 8 C 0.03 0.80 4.96 -27.88 -0.14 0.66 16 9 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 13 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 17 N -0.30 -6.26 12.18 32.99 0.40 -5.86 16 18 N -0.31 -5.93 11.45 30.31 0.35 -5.59 16 19 C 0.33 5.27 6.58 -318.88 -2.10 3.17 16 20 N -0.45 -5.55 4.38 -177.20 -0.78 -6.33 16 21 C 0.07 0.67 4.40 -5.11 -0.02 0.65 16 22 C -0.14 -0.82 5.86 -27.34 -0.16 -0.98 16 23 C 0.10 0.50 6.50 -3.57 -0.02 0.48 16 24 N -0.72 -5.42 5.33 -59.75 -0.32 -5.73 16 25 C 0.53 6.14 7.46 -11.16 -0.08 6.06 16 26 O -0.54 -8.28 17.92 5.56 0.10 -8.18 16 27 C 0.04 0.48 4.93 -4.64 -0.02 0.46 16 28 H 0.05 0.79 6.89 -51.93 -0.36 0.44 16 29 H 0.07 0.86 7.06 -51.93 -0.37 0.49 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.61 7.58 -51.93 -0.39 1.22 16 36 H 0.09 1.35 7.07 -51.93 -0.37 0.99 16 37 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 38 H 0.07 1.37 5.48 -51.93 -0.28 1.08 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.06 0.54 7.78 -51.93 -0.40 0.13 16 43 H 0.09 0.96 7.88 -51.93 -0.41 0.56 16 44 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 45 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.08 0.37 6.77 -51.93 -0.35 0.02 16 48 H 0.40 2.50 8.92 -40.82 -0.36 2.14 16 49 H 0.11 1.49 7.01 -51.93 -0.36 1.12 16 50 H 0.08 0.80 6.68 -51.93 -0.35 0.46 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -34.20 394.76 -10.81 -45.00 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.20 Total: 1.15 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -3.74 Total: -2.80 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.10 Total: -57.31 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.10 Total: -8.18 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.20 -10.81 -45.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343562045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.101 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds