Wall clock time and date at job start Tue Mar 31 2020 18:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99646 * 2 1 4 4 C 1.50700 * 120.00405 * 179.97438 * 2 1 3 5 5 N 1.46500 * 109.46982 * 94.09114 * 4 2 1 6 6 C 1.36735 * 127.13501 * 93.89088 * 5 4 2 7 7 C 1.50698 * 126.35291 * 359.96469 * 6 5 4 8 8 C 1.53006 * 109.46991 * 94.97275 * 7 6 5 9 9 C 1.50703 * 109.46983 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99886 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99886 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00105 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99996 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46837 * 89.99930 * 13 11 9 15 15 H 1.48500 * 109.46921 * 210.00029 * 13 11 9 16 16 H 1.48500 * 109.46961 * 329.99892 * 13 11 9 17 17 N 1.30297 * 107.30103 * 179.83261 * 6 5 4 18 18 N 1.28526 * 110.05760 * 0.44239 * 17 6 5 19 19 C 1.31220 * 109.85841 * 359.72214 * 18 17 6 20 20 N 1.38580 * 126.47643 * 180.02562 * 19 18 17 21 21 C 1.46900 * 110.99943 * 104.91507 * 20 19 18 22 22 C 1.46902 * 110.99719 * 340.96261 * 20 19 18 23 23 C 1.53000 * 109.46706 * 190.00047 * 22 20 19 24 24 N 1.46503 * 109.46663 * 180.02562 * 23 22 20 25 25 C 1.34784 * 119.99744 * 180.02562 * 24 23 22 26 26 C 1.50701 * 119.99639 * 179.97438 * 25 24 23 27 27 O 1.21280 * 120.00119 * 359.97438 * 25 24 23 28 28 H 1.07989 * 120.00271 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99140 * 179.72932 * 1 2 3 30 30 H 1.09000 * 109.47666 * 90.43343 * 3 2 1 31 31 H 1.08999 * 109.47287 * 210.44306 * 3 2 1 32 32 H 1.09000 * 109.47153 * 330.43731 * 3 2 1 33 33 H 1.09006 * 109.46943 * 214.09187 * 4 2 1 34 34 H 1.08998 * 109.47073 * 334.08656 * 4 2 1 35 35 H 1.08992 * 109.47538 * 214.97346 * 7 6 5 36 36 H 1.09000 * 109.46847 * 334.97633 * 7 6 5 37 37 H 1.09000 * 109.47249 * 300.00655 * 8 7 6 38 38 H 1.09000 * 109.47032 * 60.00472 * 8 7 6 39 39 H 0.97001 * 119.99929 * 179.97438 * 12 11 9 40 40 H 1.09002 * 109.46859 * 53.44418 * 21 20 19 41 41 H 1.09007 * 109.47093 * 173.44054 * 21 20 19 42 42 H 1.08993 * 109.47425 * 293.44339 * 21 20 19 43 43 H 1.08995 * 109.46895 * 309.99948 * 22 20 19 44 44 H 1.09002 * 109.46645 * 70.00433 * 22 20 19 45 45 H 1.09004 * 109.47387 * 299.99417 * 23 22 20 46 46 H 1.08992 * 109.47132 * 60.00244 * 23 22 20 47 47 H 0.97002 * 120.00320 * 359.97438 * 24 23 22 48 48 H 1.08997 * 109.47219 * 359.97438 * 26 25 24 49 49 H 1.09000 * 109.46911 * 119.99719 * 26 25 24 50 50 H 1.09000 * 109.46874 * 240.00102 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 7 2.3931 -1.6793 -1.3770 6 6 3.5516 -1.4089 -2.0512 7 6 4.7443 -0.6610 -1.5135 8 6 5.7692 -1.6586 -0.9700 9 6 6.9616 -0.9106 -0.4317 10 1 6.9862 0.1683 -0.4736 11 6 8.0216 -1.6038 0.1131 12 7 7.9919 -2.9176 0.1636 13 14 9.5001 -0.6767 0.7797 14 1 9.2847 -0.3689 2.2163 15 1 10.7177 -1.5134 0.6297 16 1 9.6730 0.5891 0.0227 17 7 3.4341 -1.9202 -3.2438 18 7 2.2856 -2.4829 -3.3711 19 6 1.6053 -2.3648 -2.2553 20 7 0.3283 -2.8459 -2.0141 21 6 0.3685 -4.0413 -1.1613 22 6 -0.3771 -3.1208 -3.2730 23 6 -1.8509 -3.4082 -2.9795 24 7 -2.5543 -3.6829 -4.2349 25 6 -3.8724 -3.9639 -4.2213 26 6 -4.5960 -4.2460 -5.5128 27 8 -4.4761 -3.9898 -3.1697 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5398 -0.9354 -0.0044 30 1 2.2519 1.6160 1.0276 31 1 3.0124 1.1769 -0.5207 32 1 1.4709 2.0667 -0.5070 33 1 2.9823 -1.1938 0.5766 34 1 1.4448 -2.0817 0.4500 35 1 5.1966 -0.0750 -2.3135 36 1 4.4245 0.0046 -0.7117 37 1 5.3169 -2.2447 -0.1700 38 1 6.0889 -2.3242 -1.7718 39 1 8.7378 -3.4053 0.5466 40 1 0.9360 -3.8232 -0.2566 41 1 -0.6477 -4.3299 -0.8920 42 1 0.8467 -4.8577 -1.7023 43 1 -0.2997 -2.2542 -3.9296 44 1 0.0720 -3.9867 -3.7595 45 1 -1.9284 -4.2748 -2.3229 46 1 -2.3000 -2.5424 -2.4930 47 1 -2.0715 -3.6618 -5.0760 48 1 -3.8950 -4.1772 -6.3446 49 1 -5.0227 -5.2485 -5.4787 50 1 -5.3938 -3.5159 -5.6491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343636031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:04 Heat of formation + Delta-G solvation = 58.220033 kcal Electronic energy + Delta-G solvation = -29244.401591 eV Core-core repulsion = 25308.598312 eV Total energy + Delta-G solvation = -3935.803278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.68274 -39.91996 -38.00700 -36.82557 -35.00982 -34.13046 -33.16772 -31.83589 -30.96017 -28.95372 -28.55697 -27.59329 -26.95906 -26.05879 -24.99831 -22.81443 -21.84034 -21.15497 -20.57647 -20.00559 -18.76408 -17.28128 -17.15321 -16.54562 -16.47776 -16.26647 -15.87866 -15.64256 -15.03153 -14.84629 -14.56706 -14.37850 -14.24470 -13.87857 -13.59999 -13.47572 -13.24864 -12.99402 -12.95098 -12.61754 -12.41335 -12.34225 -12.20387 -11.94351 -11.77238 -11.57124 -11.52379 -11.27507 -11.14869 -10.99887 -10.70551 -10.41159 -10.27352 -10.07963 -9.92249 -9.76537 -9.43607 -9.30680 -9.28532 -9.21853 -8.43688 -8.11600 -6.07957 -4.12221 1.80797 2.07583 2.30940 2.49019 2.99652 3.21858 3.27318 3.34583 3.37652 3.79053 4.38753 4.38860 4.53837 4.57949 4.62784 4.71372 4.77577 4.81935 5.01838 5.02916 5.12046 5.16618 5.22416 5.28083 5.33491 5.36035 5.40212 5.46611 5.48867 5.59044 5.65899 5.67529 5.77961 5.78760 5.93211 6.03076 6.14578 6.30278 6.38519 6.44507 6.51988 6.64575 6.71403 6.88493 7.12323 7.36800 7.52094 7.66337 7.86797 7.89285 8.26493 8.93810 9.14016 9.52544 11.03069 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002374 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.383626 B =11790.147081 C =12497.702474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.149 4.149 3 C -0.124 4.124 4 C 0.145 3.855 5 N -0.465 5.465 6 C 0.219 3.781 7 C -0.034 4.034 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.272 1.272 17 N -0.295 5.295 18 N -0.321 5.321 19 C 0.330 3.670 20 N -0.450 5.450 21 C 0.019 3.981 22 C 0.063 3.937 23 C 0.120 3.880 24 N -0.728 5.728 25 C 0.511 3.489 26 C -0.171 4.171 27 O -0.548 6.548 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.013 0.987 38 H 0.026 0.974 39 H 0.262 0.738 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.403 0.597 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.510 0.696 -4.922 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.180 4.180 4 C 0.022 3.978 5 N -0.159 5.159 6 C -0.048 4.048 7 C -0.074 4.074 8 C -0.006 4.006 9 C -0.562 4.562 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 N -0.134 5.134 18 N -0.165 5.165 19 C -0.026 4.026 20 N -0.174 5.174 21 C -0.129 4.129 22 C -0.065 4.065 23 C -0.005 4.005 24 N -0.382 5.382 25 C 0.298 3.702 26 C -0.230 4.230 27 O -0.426 6.426 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.238 0.762 48 H 0.096 0.904 49 H 0.113 0.887 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.757 0.475 -5.264 23.363 hybrid contribution 1.150 0.137 1.010 1.536 sum -21.608 0.612 -4.255 22.031 Atomic orbital electron populations 1.23837 0.94999 1.02321 0.98326 1.21822 0.95595 0.95227 1.02312 1.20943 1.00716 0.93865 1.02494 1.20860 1.01952 0.95139 0.79822 1.46240 1.14082 1.42453 1.13102 1.25575 0.88997 1.00969 0.89294 1.20527 0.88854 0.97901 1.00112 1.19070 0.91830 0.93555 0.96124 1.21126 1.02112 0.93177 1.39779 0.92293 1.25013 0.98512 0.94835 0.95919 1.69971 1.31898 1.06077 1.45094 0.86558 0.82213 0.79818 0.79215 1.20665 1.21187 1.19719 1.74010 1.10490 1.13302 1.15580 1.74496 1.00860 1.21007 1.20160 1.22170 0.90942 1.00760 0.88757 1.58453 1.09601 1.31759 1.17618 1.22659 1.03370 0.89792 0.97060 1.22107 0.91895 1.02911 0.89575 1.21297 0.90801 1.02100 0.86259 1.46023 1.09732 1.72041 1.10384 1.20812 0.81716 0.75950 0.91710 1.21847 1.01633 1.04857 0.94701 1.90738 1.66727 1.51629 1.33493 0.88248 0.87698 0.90986 0.91044 0.91915 0.87345 0.88638 0.89321 0.91000 0.96851 0.95531 0.92860 0.90846 0.89446 0.93663 0.89145 0.92041 0.91109 0.90389 0.76212 0.90449 0.88693 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 13.89 29.01 0.40 -1.20 16 2 C -0.15 -1.72 5.64 -101.07 -0.57 -2.29 16 3 C -0.12 -1.38 10.03 36.01 0.36 -1.02 16 4 C 0.14 1.88 6.02 -5.19 -0.03 1.85 16 5 N -0.47 -7.52 2.79 -115.36 -0.32 -7.84 16 6 C 0.22 4.23 7.32 -154.02 -1.13 3.10 16 7 C -0.03 -0.68 5.38 -27.88 -0.15 -0.83 16 8 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 9 C -0.52 -14.05 9.11 -34.44 -0.31 -14.36 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 13 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 17 N -0.30 -6.25 12.18 32.99 0.40 -5.85 16 18 N -0.32 -6.07 11.47 30.32 0.35 -5.72 16 19 C 0.33 5.23 6.85 -318.87 -2.19 3.04 16 20 N -0.45 -5.30 4.78 -182.38 -0.87 -6.17 16 21 C 0.02 0.19 9.15 60.06 0.55 0.74 16 22 C 0.06 0.63 4.49 -3.82 -0.02 0.61 16 23 C 0.12 1.04 5.60 -4.04 -0.02 1.02 16 24 N -0.73 -5.33 5.56 -60.29 -0.33 -5.67 16 25 C 0.51 4.50 7.94 -10.98 -0.09 4.41 16 26 C -0.17 -0.79 10.39 36.01 0.37 -0.42 16 27 O -0.55 -7.38 17.10 5.56 0.10 -7.29 16 28 H 0.10 0.90 8.03 -52.49 -0.42 0.48 16 29 H 0.10 1.03 8.00 -52.49 -0.42 0.61 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.91 6.02 -51.93 -0.31 0.59 16 32 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 33 H 0.11 1.49 7.56 -51.93 -0.39 1.09 16 34 H 0.10 1.07 6.27 -51.93 -0.33 0.74 16 35 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.07 1.27 5.51 -51.93 -0.29 0.98 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.07 0.76 6.40 -51.93 -0.33 0.43 16 41 H 0.09 0.68 6.59 -51.93 -0.34 0.34 16 42 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 43 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 44 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 45 H 0.07 0.64 6.61 -51.93 -0.34 0.30 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.40 1.96 8.31 -40.82 -0.34 1.62 16 48 H 0.08 0.19 7.91 -51.93 -0.41 -0.23 16 49 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 412.79 15.07 6.22 6.22 Total: -1.00 -35.05 412.79 -9.90 -44.96 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.10 Total: 0.02 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.05 Total: -3.13 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.04 Total: -56.70 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.10 Total: -7.29 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.05 -9.90 -44.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343636031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.175 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds