Wall clock time and date at job start Tue Mar 31 2020 18:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99646 * 2 1 4 4 C 1.50700 * 120.00405 * 179.97438 * 2 1 3 5 5 N 1.46500 * 109.46982 * 94.09114 * 4 2 1 6 6 C 1.36735 * 127.13501 * 93.89088 * 5 4 2 7 7 C 1.50698 * 126.35291 * 359.96469 * 6 5 4 8 8 C 1.53006 * 109.46991 * 94.97275 * 7 6 5 9 9 C 1.50703 * 109.46983 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99886 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99886 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00105 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99996 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46837 * 89.99930 * 13 11 9 15 15 H 1.48500 * 109.46921 * 210.00029 * 13 11 9 16 16 H 1.48500 * 109.46961 * 329.99892 * 13 11 9 17 17 N 1.30297 * 107.30103 * 179.83261 * 6 5 4 18 18 N 1.28526 * 110.05760 * 0.44239 * 17 6 5 19 19 C 1.31220 * 109.85841 * 359.72214 * 18 17 6 20 20 N 1.38580 * 126.47643 * 180.02562 * 19 18 17 21 21 C 1.46900 * 110.99943 * 104.91507 * 20 19 18 22 22 C 1.46902 * 110.99719 * 340.96261 * 20 19 18 23 23 C 1.53000 * 109.46706 * 190.00047 * 22 20 19 24 24 N 1.46503 * 109.46663 * 180.02562 * 23 22 20 25 25 C 1.34784 * 119.99744 * 180.02562 * 24 23 22 26 26 C 1.50701 * 119.99639 * 179.97438 * 25 24 23 27 27 O 1.21280 * 120.00119 * 359.97438 * 25 24 23 28 28 H 1.07989 * 120.00271 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99140 * 179.72932 * 1 2 3 30 30 H 1.09000 * 109.47666 * 90.43343 * 3 2 1 31 31 H 1.08999 * 109.47287 * 210.44306 * 3 2 1 32 32 H 1.09000 * 109.47153 * 330.43731 * 3 2 1 33 33 H 1.09006 * 109.46943 * 214.09187 * 4 2 1 34 34 H 1.08998 * 109.47073 * 334.08656 * 4 2 1 35 35 H 1.08992 * 109.47538 * 214.97346 * 7 6 5 36 36 H 1.09000 * 109.46847 * 334.97633 * 7 6 5 37 37 H 1.09000 * 109.47249 * 300.00655 * 8 7 6 38 38 H 1.09000 * 109.47032 * 60.00472 * 8 7 6 39 39 H 0.97001 * 119.99929 * 179.97438 * 12 11 9 40 40 H 1.09002 * 109.46859 * 53.44418 * 21 20 19 41 41 H 1.09007 * 109.47093 * 173.44054 * 21 20 19 42 42 H 1.08993 * 109.47425 * 293.44339 * 21 20 19 43 43 H 1.08995 * 109.46895 * 309.99948 * 22 20 19 44 44 H 1.09002 * 109.46645 * 70.00433 * 22 20 19 45 45 H 1.09004 * 109.47387 * 299.99417 * 23 22 20 46 46 H 1.08992 * 109.47132 * 60.00244 * 23 22 20 47 47 H 0.97002 * 120.00320 * 359.97438 * 24 23 22 48 48 H 1.08997 * 109.47219 * 359.97438 * 26 25 24 49 49 H 1.09000 * 109.46911 * 119.99719 * 26 25 24 50 50 H 1.09000 * 109.46874 * 240.00102 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 7 2.3931 -1.6793 -1.3770 6 6 3.5516 -1.4089 -2.0512 7 6 4.7443 -0.6610 -1.5135 8 6 5.7692 -1.6586 -0.9700 9 6 6.9616 -0.9106 -0.4317 10 1 6.9862 0.1683 -0.4736 11 6 8.0216 -1.6038 0.1131 12 7 7.9919 -2.9176 0.1636 13 14 9.5001 -0.6767 0.7797 14 1 9.2847 -0.3689 2.2163 15 1 10.7177 -1.5134 0.6297 16 1 9.6730 0.5891 0.0227 17 7 3.4341 -1.9202 -3.2438 18 7 2.2856 -2.4829 -3.3711 19 6 1.6053 -2.3648 -2.2553 20 7 0.3283 -2.8459 -2.0141 21 6 0.3685 -4.0413 -1.1613 22 6 -0.3771 -3.1208 -3.2730 23 6 -1.8509 -3.4082 -2.9795 24 7 -2.5543 -3.6829 -4.2349 25 6 -3.8724 -3.9639 -4.2213 26 6 -4.5960 -4.2460 -5.5128 27 8 -4.4761 -3.9898 -3.1697 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5398 -0.9354 -0.0044 30 1 2.2519 1.6160 1.0276 31 1 3.0124 1.1769 -0.5207 32 1 1.4709 2.0667 -0.5070 33 1 2.9823 -1.1938 0.5766 34 1 1.4448 -2.0817 0.4500 35 1 5.1966 -0.0750 -2.3135 36 1 4.4245 0.0046 -0.7117 37 1 5.3169 -2.2447 -0.1700 38 1 6.0889 -2.3242 -1.7718 39 1 8.7378 -3.4053 0.5466 40 1 0.9360 -3.8232 -0.2566 41 1 -0.6477 -4.3299 -0.8920 42 1 0.8467 -4.8577 -1.7023 43 1 -0.2997 -2.2542 -3.9296 44 1 0.0720 -3.9867 -3.7595 45 1 -1.9284 -4.2748 -2.3229 46 1 -2.3000 -2.5424 -2.4930 47 1 -2.0715 -3.6618 -5.0760 48 1 -3.8950 -4.1772 -6.3446 49 1 -5.0227 -5.2485 -5.4787 50 1 -5.3938 -3.5159 -5.6491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343636031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:03 Heat of formation + Delta-G solvation = 36.489993 kcal Electronic energy + Delta-G solvation = -29245.343876 eV Core-core repulsion = 25308.598312 eV Total energy + Delta-G solvation = -3936.745564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.05081 -40.65588 -39.00100 -37.87832 -36.11459 -35.68123 -34.43793 -33.59106 -31.68232 -30.39856 -29.26985 -28.65051 -27.95867 -27.39673 -26.46826 -23.97091 -23.46934 -22.03412 -21.73256 -21.25260 -19.77982 -18.58946 -18.25561 -17.88310 -17.51390 -17.35828 -16.85876 -16.52423 -16.48336 -15.91289 -15.86587 -15.42026 -15.21163 -15.04181 -14.87110 -14.52155 -14.39668 -14.19655 -14.06033 -13.38632 -13.35991 -13.30251 -13.11021 -12.98096 -12.95855 -12.83079 -12.70412 -12.62428 -12.44914 -12.42159 -12.33780 -11.98260 -11.80168 -11.57142 -11.31116 -11.08030 -11.01764 -10.58684 -10.55297 -10.16049 -10.14756 -9.45030 -8.20190 -6.32314 0.70061 0.85734 1.43071 1.44819 1.51322 1.55744 1.64275 1.76784 2.19331 2.42199 2.79927 3.14162 3.45630 3.57220 3.63022 3.70023 3.85970 3.90007 3.98780 4.01263 4.20542 4.27049 4.37917 4.40403 4.51375 4.51823 4.57577 4.63253 4.67346 4.70273 4.77302 4.80334 4.82360 4.85611 4.90582 4.98313 5.02322 5.11634 5.15420 5.34396 5.42604 5.45743 5.56155 5.58488 5.61547 5.78207 5.83241 6.11901 6.17300 6.54205 6.83443 7.23770 7.37658 7.71510 8.91789 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002374 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.383626 B =11790.147081 C =12497.702474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.167 4.167 3 C -0.122 4.122 4 C 0.139 3.861 5 N -0.461 5.461 6 C 0.203 3.797 7 C -0.017 4.017 8 C 0.044 3.956 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.269 1.269 15 H -0.288 1.288 16 H -0.260 1.260 17 N -0.331 5.331 18 N -0.350 5.350 19 C 0.349 3.651 20 N -0.442 5.442 21 C 0.017 3.983 22 C 0.070 3.930 23 C 0.131 3.869 24 N -0.719 5.719 25 C 0.506 3.494 26 C -0.164 4.164 27 O -0.600 6.600 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.095 0.905 37 H -0.008 1.008 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.037 0.963 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.417 0.583 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.110 1.786 -4.593 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.168 4.168 3 C -0.178 4.178 4 C 0.018 3.982 5 N -0.154 5.154 6 C -0.065 4.065 7 C -0.057 4.057 8 C 0.006 3.994 9 C -0.575 4.575 10 H 0.090 0.910 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.792 3.208 14 H -0.195 1.195 15 H -0.214 1.214 16 H -0.184 1.184 17 N -0.170 5.170 18 N -0.195 5.195 19 C -0.008 4.008 20 N -0.167 5.167 21 C -0.129 4.129 22 C -0.057 4.057 23 C 0.006 3.994 24 N -0.373 5.373 25 C 0.295 3.705 26 C -0.223 4.223 27 O -0.482 6.482 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.011 0.989 38 H 0.003 0.997 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.135 0.865 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.254 0.746 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.360 1.580 -4.959 24.910 hybrid contribution 1.515 -0.260 0.898 1.781 sum -22.845 1.319 -4.060 23.240 Atomic orbital electron populations 1.24019 0.94405 1.03404 0.95684 1.21751 0.96046 0.94452 1.04537 1.20928 0.99830 0.94040 1.03048 1.21109 1.02125 0.96897 0.78020 1.46379 1.13137 1.41811 1.14045 1.25246 0.89969 1.01791 0.89541 1.20201 0.88099 0.96779 1.00581 1.18825 0.92865 0.93691 0.94015 1.21575 1.02657 0.93995 1.39234 0.90951 1.25991 1.01876 0.95647 0.96261 1.70122 1.32994 1.07961 1.46336 0.85410 0.77863 0.78604 0.78962 1.19467 1.21377 1.18406 1.73903 1.11918 1.14255 1.16940 1.74403 1.00766 1.22343 1.21952 1.22571 0.91565 0.98952 0.87731 1.58651 1.07007 1.32550 1.18525 1.22768 1.05189 0.88555 0.96410 1.22077 0.92451 1.02521 0.88683 1.21094 0.89597 1.01753 0.86928 1.45988 1.09591 1.71141 1.10587 1.21566 0.81752 0.74720 0.92415 1.21875 1.01991 1.05343 0.93105 1.90714 1.67770 1.54064 1.35620 0.86598 0.87133 0.89929 0.93018 0.90922 0.88430 0.86669 0.89455 0.88663 0.98926 0.99746 0.92837 0.90926 0.86506 0.94412 0.89827 0.92161 0.91061 0.91151 0.74606 0.87771 0.87987 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 13.89 67.78 0.94 -1.49 16 2 C -0.17 -3.58 5.64 -16.49 -0.09 -3.67 16 3 C -0.12 -2.54 10.03 71.24 0.71 -1.83 16 4 C 0.14 3.52 6.02 85.63 0.52 4.04 16 5 N -0.46 -14.89 2.79 -518.90 -1.45 -16.34 16 6 C 0.20 8.07 7.32 137.64 1.01 9.08 16 7 C -0.02 -0.70 5.38 29.85 0.16 -0.53 16 8 C 0.04 2.30 4.96 29.85 0.15 2.45 16 9 C -0.54 -29.18 9.11 25.60 0.23 -28.95 16 10 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 11 C 0.00 0.01 5.46 84.65 0.46 0.47 16 12 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 13 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 14 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 15 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 17 N -0.33 -14.48 12.18 -49.54 -0.60 -15.08 16 18 N -0.35 -13.46 11.47 -58.00 -0.67 -14.13 16 19 C 0.35 10.94 6.85 260.11 1.78 12.72 16 20 N -0.44 -9.83 4.78 -730.91 -3.49 -13.32 16 21 C 0.02 0.33 9.15 127.69 1.17 1.49 16 22 C 0.07 1.31 4.49 86.30 0.39 1.70 16 23 C 0.13 2.06 5.60 86.38 0.48 2.55 16 24 N -0.72 -9.27 5.56 -463.05 -2.57 -11.84 16 25 C 0.51 8.14 7.94 87.66 0.70 8.84 16 26 C -0.16 -1.13 10.39 71.24 0.74 -0.39 16 27 O -0.60 -15.76 17.10 -3.03 -0.05 -15.81 16 28 H 0.12 1.71 8.03 -2.92 -0.02 1.68 16 29 H 0.11 1.84 8.00 -2.91 -0.02 1.82 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.27 6.02 -2.39 -0.01 1.26 16 32 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 33 H 0.10 2.68 7.56 -2.38 -0.02 2.66 16 34 H 0.12 2.40 6.27 -2.39 -0.01 2.38 16 35 H 0.09 3.54 8.14 -2.39 -0.02 3.53 16 36 H 0.10 3.39 5.51 -2.39 -0.01 3.37 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.07 1.38 6.40 -2.39 -0.02 1.37 16 41 H 0.12 1.52 6.59 -2.38 -0.02 1.51 16 42 H 0.04 0.78 8.12 -2.39 -0.02 0.76 16 43 H 0.08 1.72 8.03 -2.39 -0.02 1.70 16 44 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 45 H 0.07 1.15 6.61 -2.38 -0.02 1.14 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.42 3.16 8.31 -92.71 -0.77 2.39 16 48 H 0.10 0.15 7.91 -2.39 -0.02 0.14 16 49 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -78.62 412.79 3.00 -75.62 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.17 Total: 15.44 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 9.35 Total: 6.48 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -8.50 Total: -126.74 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.05 Total: -15.81 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -78.62 3.00 -75.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343636031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.108 kcal (2) G-P(sol) polarization free energy of solvation -78.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds