Wall clock time and date at job start Tue Mar 31 2020 18:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35497 * 126.97591 * 2 1 4 4 N 1.30516 * 107.30532 * 179.97438 * 3 2 1 5 5 N 1.28604 * 109.67535 * 359.72614 * 4 3 2 6 6 C 1.30524 * 109.66935 * 0.44815 * 5 4 3 7 7 C 1.50694 * 126.34567 * 179.82548 * 6 5 4 8 8 C 1.53041 * 109.46108 * 299.68936 * 7 6 5 9 9 C 1.53189 * 109.31621 * 181.38746 * 8 7 6 10 10 N 1.46933 * 108.77196 * 305.36698 * 9 8 7 11 11 C 1.34779 * 120.62793 * 233.58162 * 10 9 8 12 12 O 1.21586 * 119.99900 * 5.22563 * 11 10 9 13 13 N 1.34778 * 119.99935 * 185.21977 * 11 10 9 14 14 C 1.46502 * 119.99582 * 175.01517 * 13 11 10 15 15 C 1.53000 * 109.46534 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47462 * 300.00333 * 15 14 13 17 17 C 1.53008 * 109.47233 * 60.00335 * 15 14 13 18 18 C 1.50704 * 109.46817 * 179.97438 * 15 14 13 19 19 H 1.07991 * 120.00260 * 0.02562 * 18 15 14 20 20 C 1.37882 * 119.99579 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00586 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99736 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.46897 * 89.99688 * 22 20 18 24 24 H 1.48493 * 109.47108 * 210.00092 * 22 20 18 25 25 H 1.48507 * 109.47009 * 329.99931 * 22 20 18 26 26 C 1.46924 * 118.73982 * 53.85715 * 10 9 8 27 27 C 1.53042 * 109.46243 * 59.75885 * 7 6 5 28 28 H 1.08994 * 109.47817 * 270.00022 * 1 2 3 29 29 H 1.08994 * 109.47266 * 30.00966 * 1 2 3 30 30 H 1.09006 * 109.46425 * 150.00518 * 1 2 3 31 31 H 1.08001 * 126.34728 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.44978 * 179.72507 * 7 6 5 33 33 H 1.09006 * 109.49766 * 61.43314 * 8 7 6 34 34 H 1.09004 * 109.52237 * 301.35408 * 8 7 6 35 35 H 1.08993 * 109.58861 * 185.58030 * 9 8 7 36 36 H 1.08993 * 109.58906 * 65.14875 * 9 8 7 37 37 H 0.96998 * 119.99957 * 355.01868 * 13 11 10 38 38 H 1.08999 * 109.46950 * 60.00577 * 14 13 11 39 39 H 1.08994 * 109.47292 * 299.99762 * 14 13 11 40 40 H 1.08997 * 109.47817 * 60.00140 * 16 15 14 41 41 H 1.09004 * 109.47177 * 180.02562 * 16 15 14 42 42 H 1.09004 * 109.46800 * 299.99901 * 16 15 14 43 43 H 1.09003 * 109.46940 * 59.99619 * 17 15 14 44 44 H 1.08994 * 109.47197 * 179.97438 * 17 15 14 45 45 H 1.09000 * 109.47047 * 299.99845 * 17 15 14 46 46 H 0.96999 * 120.00270 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.58342 * 65.93187 * 26 10 9 48 48 H 1.09000 * 109.58624 * 186.35188 * 26 10 9 49 49 H 1.08997 * 109.49669 * 298.56738 * 27 7 6 50 50 H 1.08996 * 109.49534 * 58.65990 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5090 0.6431 0.0006 5 7 3.5091 -0.6429 0.0067 6 6 2.2801 -1.0824 0.0007 7 6 1.8478 -2.5260 0.0011 8 6 2.3931 -3.2218 -1.2482 9 6 1.9230 -4.6797 -1.2621 10 7 2.3161 -5.3154 0.0029 11 6 3.0255 -6.4614 0.0042 12 8 3.4278 -6.9284 -1.0438 13 7 3.2891 -7.0895 1.1671 14 6 3.9645 -8.3895 1.1607 15 6 4.1408 -8.8796 2.5993 16 6 4.9835 -7.8708 3.3822 17 6 2.7688 -9.0210 3.2618 18 6 4.8350 -10.2172 2.5928 19 1 5.1222 -10.6720 1.6563 20 6 5.1036 -10.8603 3.7825 21 7 4.7544 -10.3063 4.9229 22 14 5.9648 -12.5180 3.7744 23 1 7.4341 -12.3127 3.8404 24 1 5.5225 -13.3113 4.9492 25 1 5.6224 -13.2476 2.5271 26 6 1.9158 -4.6814 1.2665 27 6 2.3908 -3.2206 1.2520 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8898 -0.5140 30 1 -0.3632 -0.8901 -0.5138 31 1 1.9700 2.1170 -0.0004 32 1 0.7590 -2.5788 0.0001 33 1 3.4827 -3.1910 -1.2354 34 1 2.0251 -2.7124 -2.1388 35 1 2.3884 -5.2058 -2.0955 36 1 0.8385 -4.7130 -1.3661 37 1 3.0315 -6.6809 2.0083 38 1 4.9417 -8.2889 0.6884 39 1 3.3638 -9.1083 0.6035 40 1 4.4811 -6.9036 3.3870 41 1 5.1095 -8.2202 4.4070 42 1 5.9610 -7.7702 2.9103 43 1 2.1684 -9.7397 2.7040 44 1 2.8944 -9.3705 4.2865 45 1 2.2662 -8.0537 3.2665 46 1 4.9437 -10.7586 5.7599 47 1 0.8307 -4.7148 1.3644 48 1 2.3765 -5.2086 2.1018 49 1 3.4803 -3.1898 1.2413 50 1 2.0207 -2.7101 2.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365196777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:47 Heat of formation + Delta-G solvation = 51.309849 kcal Electronic energy + Delta-G solvation = -29686.010810 eV Core-core repulsion = 25749.907884 eV Total energy + Delta-G solvation = -3936.102926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.44152 -40.17741 -37.83018 -36.27724 -35.42169 -33.82540 -33.16321 -31.37977 -30.62642 -29.99058 -28.11001 -26.12065 -25.69763 -25.41150 -24.54784 -23.36191 -22.82391 -21.92308 -20.50848 -19.33386 -18.85344 -18.00148 -17.49365 -16.67938 -15.98557 -15.68603 -15.57517 -15.32550 -15.14097 -14.70058 -14.37477 -14.23605 -13.98476 -13.71418 -13.59778 -13.48878 -13.28410 -12.82432 -12.59216 -12.54021 -12.10282 -11.93637 -11.64436 -11.46279 -11.34664 -11.19408 -11.09105 -10.96582 -10.83983 -10.66345 -10.58240 -10.52675 -10.35598 -10.17427 -9.71542 -9.60063 -9.44532 -9.26859 -8.76310 -8.69315 -8.37815 -8.11407 -5.99531 -4.09143 1.46849 2.07611 2.62983 2.93023 3.30767 3.37566 3.41902 3.58803 3.86819 4.04902 4.18719 4.26643 4.38062 4.44684 4.46900 4.51940 4.70309 4.80344 4.88515 5.05916 5.09001 5.15743 5.27365 5.32357 5.44084 5.50724 5.55535 5.61550 5.76534 5.86318 5.92365 6.14587 6.23286 6.40505 6.47760 6.53218 6.60352 6.83006 6.84914 6.94479 7.06449 7.13069 7.26794 7.41957 7.58731 7.72628 8.04095 8.15162 8.39907 8.45299 8.47430 8.90664 9.05113 9.56484 11.01961 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.002274 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.428052 B =12309.032442 C =12669.826216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.479 5.479 3 C 0.143 3.857 4 N -0.297 5.297 5 N -0.285 5.285 6 C 0.184 3.816 7 C 0.004 3.996 8 C -0.123 4.123 9 C 0.134 3.866 10 N -0.636 5.636 11 C 0.703 3.297 12 O -0.596 6.596 13 N -0.733 5.733 14 C 0.149 3.851 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.115 3.885 27 C -0.123 4.123 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.217 0.783 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.393 0.607 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.004 0.996 41 H 0.085 0.915 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.004 0.996 46 H 0.259 0.741 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.743 21.898 -6.980 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.170 5.170 3 C -0.145 4.145 4 N -0.136 5.136 5 N -0.125 5.125 6 C -0.083 4.083 7 C -0.017 4.017 8 C -0.163 4.163 9 C 0.010 3.990 10 N -0.375 5.375 11 C 0.404 3.596 12 O -0.475 6.475 13 N -0.389 5.389 14 C 0.026 3.974 15 C 0.055 3.945 16 C -0.188 4.188 17 C -0.187 4.187 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.009 4.009 27 C -0.162 4.162 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.234 0.766 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.230 0.770 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.023 0.977 41 H 0.104 0.896 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.104 0.896 45 H 0.023 0.977 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.927 21.481 -7.533 26.178 hybrid contribution -1.233 -0.298 0.546 1.381 sum -14.161 21.183 -6.988 26.421 Atomic orbital electron populations 1.22133 0.75428 1.05336 1.04356 1.46250 1.09175 1.06815 1.54774 1.26441 0.87358 0.94877 1.05785 1.74300 1.18041 1.03459 1.17751 1.74306 1.16972 1.02891 1.18306 1.24936 0.87354 0.92063 1.03952 1.19629 1.00184 0.83946 0.97915 1.21979 1.03177 0.95320 0.95776 1.21352 0.98995 0.91502 0.87163 1.47260 1.58731 1.25080 1.06449 1.15960 0.78769 0.79930 0.84911 1.90870 1.57739 1.67688 1.31210 1.45679 1.63514 1.23327 1.06389 1.21596 0.95195 0.80327 1.00291 1.18362 0.93400 0.94701 0.88011 1.21820 0.97823 0.94933 1.04176 1.21820 0.96323 0.96375 1.04178 1.20987 1.37712 1.02732 0.92803 0.92392 1.24878 0.95503 0.97647 0.95516 1.69801 1.47194 1.38264 0.97291 0.86573 0.79835 0.83932 0.77541 1.20715 1.21320 1.19905 1.21660 0.99859 0.92499 0.86904 1.22025 1.03196 0.94952 0.96061 0.89779 0.88884 0.88935 0.76643 0.89532 0.89813 0.90898 0.88268 0.92018 0.76999 0.92850 0.93024 0.97683 0.89637 0.95370 0.95444 0.89632 0.97702 0.93051 0.91316 0.89610 0.89668 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.14 10.91 59.85 0.65 0.80 16 2 N -0.48 -3.34 3.15 -122.69 -0.39 -3.72 16 3 C 0.14 1.15 12.74 -89.95 -1.15 0.00 16 4 N -0.30 -3.82 12.21 29.69 0.36 -3.45 16 5 N -0.29 -3.90 12.21 32.79 0.40 -3.50 16 6 C 0.18 1.82 6.54 -154.99 -1.01 0.81 16 7 C 0.00 0.04 2.50 -91.73 -0.23 -0.19 16 8 C -0.12 -1.17 5.34 -26.61 -0.14 -1.31 16 9 C 0.13 1.45 6.44 -3.71 -0.02 1.43 16 10 N -0.64 -8.44 2.97 -178.24 -0.53 -8.97 16 11 C 0.70 12.74 8.30 -86.91 -0.72 12.01 16 12 O -0.60 -13.05 15.77 5.29 0.08 -12.97 16 13 N -0.73 -13.44 4.87 -65.23 -0.32 -13.76 16 14 C 0.15 3.24 4.51 -4.04 -0.02 3.22 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -2.96 8.08 37.15 0.30 -2.66 16 17 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 18 C -0.50 -13.27 8.01 -34.44 -0.28 -13.55 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.89 -23.67 9.35 55.43 0.52 -23.15 16 22 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.11 1.16 6.42 -3.49 -0.02 1.13 16 27 C -0.12 -1.15 5.36 -26.39 -0.14 -1.29 16 28 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.09 0.11 7.18 -51.93 -0.37 -0.27 16 31 H 0.22 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.09 0.47 6.89 -51.93 -0.36 0.11 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.29 6.99 -51.93 -0.36 0.93 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.39 6.48 3.65 -40.82 -0.15 6.34 16 38 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 41 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 45 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 46 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 0.93 5.64 -51.93 -0.29 0.63 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -34.41 388.28 -9.60 -44.01 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.92 Total: 3.16 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.65 Total: 0.67 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.05 Total: -56.56 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.41 -9.60 -44.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365196777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.320 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds