Wall clock time and date at job start Tue Mar 31 2020 18:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35497 * 126.97591 * 2 1 4 4 N 1.30516 * 107.30532 * 179.97438 * 3 2 1 5 5 N 1.28604 * 109.67535 * 359.72614 * 4 3 2 6 6 C 1.30524 * 109.66935 * 0.44815 * 5 4 3 7 7 C 1.50694 * 126.34567 * 179.82548 * 6 5 4 8 8 C 1.53041 * 109.46108 * 299.68936 * 7 6 5 9 9 C 1.53189 * 109.31621 * 181.38746 * 8 7 6 10 10 N 1.46933 * 108.77196 * 305.36698 * 9 8 7 11 11 C 1.34779 * 120.62793 * 233.58162 * 10 9 8 12 12 O 1.21586 * 119.99900 * 5.22563 * 11 10 9 13 13 N 1.34778 * 119.99935 * 185.21977 * 11 10 9 14 14 C 1.46502 * 119.99582 * 175.01517 * 13 11 10 15 15 C 1.53000 * 109.46534 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47462 * 300.00333 * 15 14 13 17 17 C 1.53008 * 109.47233 * 60.00335 * 15 14 13 18 18 C 1.50704 * 109.46817 * 179.97438 * 15 14 13 19 19 H 1.07991 * 120.00260 * 0.02562 * 18 15 14 20 20 C 1.37882 * 119.99579 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00586 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99736 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.46897 * 89.99688 * 22 20 18 24 24 H 1.48493 * 109.47108 * 210.00092 * 22 20 18 25 25 H 1.48507 * 109.47009 * 329.99931 * 22 20 18 26 26 C 1.46924 * 118.73982 * 53.85715 * 10 9 8 27 27 C 1.53042 * 109.46243 * 59.75885 * 7 6 5 28 28 H 1.08994 * 109.47817 * 270.00022 * 1 2 3 29 29 H 1.08994 * 109.47266 * 30.00966 * 1 2 3 30 30 H 1.09006 * 109.46425 * 150.00518 * 1 2 3 31 31 H 1.08001 * 126.34728 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.44978 * 179.72507 * 7 6 5 33 33 H 1.09006 * 109.49766 * 61.43314 * 8 7 6 34 34 H 1.09004 * 109.52237 * 301.35408 * 8 7 6 35 35 H 1.08993 * 109.58861 * 185.58030 * 9 8 7 36 36 H 1.08993 * 109.58906 * 65.14875 * 9 8 7 37 37 H 0.96998 * 119.99957 * 355.01868 * 13 11 10 38 38 H 1.08999 * 109.46950 * 60.00577 * 14 13 11 39 39 H 1.08994 * 109.47292 * 299.99762 * 14 13 11 40 40 H 1.08997 * 109.47817 * 60.00140 * 16 15 14 41 41 H 1.09004 * 109.47177 * 180.02562 * 16 15 14 42 42 H 1.09004 * 109.46800 * 299.99901 * 16 15 14 43 43 H 1.09003 * 109.46940 * 59.99619 * 17 15 14 44 44 H 1.08994 * 109.47197 * 179.97438 * 17 15 14 45 45 H 1.09000 * 109.47047 * 299.99845 * 17 15 14 46 46 H 0.96999 * 120.00270 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.58342 * 65.93187 * 26 10 9 48 48 H 1.09000 * 109.58624 * 186.35188 * 26 10 9 49 49 H 1.08997 * 109.49669 * 298.56738 * 27 7 6 50 50 H 1.08996 * 109.49534 * 58.65990 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5090 0.6431 0.0006 5 7 3.5091 -0.6429 0.0067 6 6 2.2801 -1.0824 0.0007 7 6 1.8478 -2.5260 0.0011 8 6 2.3931 -3.2218 -1.2482 9 6 1.9230 -4.6797 -1.2621 10 7 2.3161 -5.3154 0.0029 11 6 3.0255 -6.4614 0.0042 12 8 3.4278 -6.9284 -1.0438 13 7 3.2891 -7.0895 1.1671 14 6 3.9645 -8.3895 1.1607 15 6 4.1408 -8.8796 2.5993 16 6 4.9835 -7.8708 3.3822 17 6 2.7688 -9.0210 3.2618 18 6 4.8350 -10.2172 2.5928 19 1 5.1222 -10.6720 1.6563 20 6 5.1036 -10.8603 3.7825 21 7 4.7544 -10.3063 4.9229 22 14 5.9648 -12.5180 3.7744 23 1 7.4341 -12.3127 3.8404 24 1 5.5225 -13.3113 4.9492 25 1 5.6224 -13.2476 2.5271 26 6 1.9158 -4.6814 1.2665 27 6 2.3908 -3.2206 1.2520 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8898 -0.5140 30 1 -0.3632 -0.8901 -0.5138 31 1 1.9700 2.1170 -0.0004 32 1 0.7590 -2.5788 0.0001 33 1 3.4827 -3.1910 -1.2354 34 1 2.0251 -2.7124 -2.1388 35 1 2.3884 -5.2058 -2.0955 36 1 0.8385 -4.7130 -1.3661 37 1 3.0315 -6.6809 2.0083 38 1 4.9417 -8.2889 0.6884 39 1 3.3638 -9.1083 0.6035 40 1 4.4811 -6.9036 3.3870 41 1 5.1095 -8.2202 4.4070 42 1 5.9610 -7.7702 2.9103 43 1 2.1684 -9.7397 2.7040 44 1 2.8944 -9.3705 4.2865 45 1 2.2662 -8.0537 3.2665 46 1 4.9437 -10.7586 5.7599 47 1 0.8307 -4.7148 1.3644 48 1 2.3765 -5.2086 2.1018 49 1 3.4803 -3.1898 1.2413 50 1 2.0207 -2.7101 2.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365196777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:46 Heat of formation + Delta-G solvation = 30.815513 kcal Electronic energy + Delta-G solvation = -29686.899511 eV Core-core repulsion = 25749.907884 eV Total energy + Delta-G solvation = -3936.991627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.08704 -41.43000 -39.01535 -37.95218 -35.96558 -35.18535 -34.48903 -32.78356 -31.86830 -30.86813 -28.41362 -27.55856 -27.53304 -27.10785 -25.94984 -24.24131 -23.52863 -22.76338 -21.41074 -20.61101 -20.47646 -19.20833 -18.04288 -17.78269 -17.30622 -17.04337 -16.70062 -16.58190 -16.04500 -15.85965 -15.42209 -15.41750 -15.06788 -14.85471 -14.57184 -14.46902 -14.19372 -14.01228 -13.90844 -13.66957 -13.31040 -13.18625 -13.08096 -12.72064 -12.65329 -12.58197 -12.37387 -12.27266 -12.23477 -12.11663 -11.89525 -11.76316 -11.47291 -11.29693 -11.23325 -11.05962 -11.02652 -10.69428 -10.38807 -10.20000 -10.08747 -9.42193 -8.01077 -6.16315 0.88613 1.43451 1.46154 1.54318 1.62826 1.75124 1.91167 2.19623 2.46997 3.06183 3.22487 3.22609 3.58721 3.75823 3.83313 3.93942 4.02763 4.08790 4.32424 4.34874 4.42627 4.44422 4.47858 4.54854 4.57973 4.72089 4.73838 4.77168 4.80404 4.82539 4.91106 4.97098 5.02839 5.06419 5.12472 5.12674 5.21271 5.22081 5.38812 5.40287 5.60750 5.66567 5.68308 5.69135 5.98039 6.01977 6.16282 6.23323 6.45352 6.87608 7.05486 7.51121 7.63275 7.79267 8.98026 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.002274 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.428052 B =12309.032442 C =12669.826216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.472 5.472 3 C 0.159 3.841 4 N -0.357 5.357 5 N -0.343 5.343 6 C 0.182 3.818 7 C 0.012 3.988 8 C -0.113 4.113 9 C 0.132 3.868 10 N -0.628 5.628 11 C 0.697 3.303 12 O -0.641 6.641 13 N -0.727 5.727 14 C 0.167 3.833 15 C 0.053 3.947 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.527 4.527 19 H 0.044 0.956 20 C 0.028 3.972 21 N -0.899 5.899 22 Si 0.945 3.055 23 H -0.281 1.281 24 H -0.281 1.281 25 H -0.276 1.276 26 C 0.112 3.888 27 C -0.116 4.116 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.259 0.741 32 H 0.131 0.869 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.403 0.597 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.014 0.986 43 H 0.020 0.980 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.260 0.740 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.048 0.952 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.209 23.816 -6.634 30.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.161 5.161 3 C -0.130 4.130 4 N -0.196 5.196 5 N -0.182 5.182 6 C -0.087 4.087 7 C -0.009 4.009 8 C -0.153 4.153 9 C 0.010 3.990 10 N -0.366 5.366 11 C 0.398 3.602 12 O -0.524 6.524 13 N -0.385 5.385 14 C 0.042 3.958 15 C 0.052 3.948 16 C -0.177 4.177 17 C -0.176 4.176 18 C -0.566 4.566 19 H 0.062 0.938 20 C -0.171 4.171 21 N -0.538 5.538 22 Si 0.772 3.228 23 H -0.207 1.207 24 H -0.207 1.207 25 H -0.201 1.201 26 C -0.011 4.011 27 C -0.156 4.156 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.275 0.725 32 H 0.148 0.852 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.243 0.757 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.039 0.961 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.127 0.873 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.444 23.455 -7.164 29.528 hybrid contribution -0.217 -0.773 0.408 0.901 sum -16.661 22.682 -6.756 28.943 Atomic orbital electron populations 1.22586 0.72138 1.07404 1.05997 1.46492 1.10906 1.05429 1.53312 1.27208 0.86348 0.96654 1.02772 1.74175 1.21109 1.03573 1.20739 1.74186 1.19755 1.03753 1.20551 1.25049 0.87029 0.93211 1.03458 1.19662 1.02392 0.82673 0.96136 1.21839 1.00827 0.94874 0.97712 1.21546 1.00982 0.91404 0.85116 1.47342 1.57055 1.23417 1.08767 1.16148 0.78987 0.81115 0.83902 1.90838 1.59558 1.69357 1.32627 1.45384 1.63525 1.22332 1.07245 1.21122 0.94117 0.81715 0.98841 1.18352 0.93847 0.93694 0.88922 1.21667 0.97467 0.96172 1.02441 1.21644 0.95761 0.97865 1.02303 1.21262 1.38550 1.04364 0.92436 0.93795 1.25442 0.96100 1.00246 0.95343 1.69897 1.47411 1.39027 0.97436 0.85765 0.78794 0.80827 0.77448 1.20697 1.20668 1.20057 1.21944 1.02093 0.92222 0.84812 1.21927 1.01053 0.94852 0.97731 0.88270 0.86445 0.87435 0.72525 0.85163 0.93739 0.88985 0.91048 0.88004 0.75740 0.95171 0.94435 0.94803 0.91695 0.96688 0.96107 0.91821 0.94472 0.93009 0.87296 0.90420 0.93325 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.06 10.91 127.77 1.39 1.33 16 2 N -0.47 -5.00 3.15 -542.09 -1.71 -6.71 16 3 C 0.16 2.19 12.74 180.11 2.30 4.49 16 4 N -0.36 -9.18 12.21 -59.99 -0.73 -9.91 16 5 N -0.34 -9.49 12.21 -50.16 -0.61 -10.10 16 6 C 0.18 3.26 6.54 137.98 0.90 4.16 16 7 C 0.01 0.16 2.50 -11.51 -0.03 0.13 16 8 C -0.11 -2.00 5.34 30.67 0.16 -1.83 16 9 C 0.13 2.63 6.44 86.36 0.56 3.19 16 10 N -0.63 -15.74 2.97 -836.08 -2.48 -18.22 16 11 C 0.70 25.29 8.30 179.05 1.49 26.77 16 12 O -0.64 -28.96 15.77 -3.99 -0.06 -29.02 16 13 N -0.73 -26.50 4.87 -478.54 -2.33 -28.83 16 14 C 0.17 7.41 4.51 86.38 0.39 7.80 16 15 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 16 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 17 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 18 C -0.53 -28.36 8.01 25.60 0.21 -28.15 16 19 H 0.04 2.42 7.74 -2.92 -0.02 2.40 16 20 C 0.03 1.51 5.15 84.66 0.44 1.95 16 21 N -0.90 -48.16 9.35 21.45 0.20 -47.96 16 22 Si 0.94 43.11 29.54 68.60 2.03 45.14 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 C 0.11 1.91 6.42 86.51 0.56 2.47 16 27 C -0.12 -1.91 5.36 30.82 0.17 -1.75 16 28 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.12 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.11 -0.38 7.18 -2.38 -0.02 -0.40 16 31 H 0.26 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.13 0.65 6.89 -2.38 -0.02 0.63 16 33 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 1.87 6.99 -2.39 -0.02 1.85 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.40 12.73 3.65 -92.71 -0.34 12.39 16 38 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 40 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 41 H 0.06 3.26 6.07 -2.38 -0.01 3.25 16 42 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 45 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 46 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 47 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.08 1.48 5.64 -2.39 -0.01 1.46 16 49 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -80.79 388.28 4.56 -76.23 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.61 Total: 15.91 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 9.65 Total: 13.48 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -7.66 Total: -121.73 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.06 Total: -29.02 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -80.79 4.56 -76.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365196777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.043 kcal (2) G-P(sol) polarization free energy of solvation -80.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds