Wall clock time and date at job start Tue Mar 31 2020 19:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46584 * 2 1 4 4 N 1.46502 * 109.46515 * 184.64584 * 3 2 1 5 5 C 1.36744 * 127.13756 * 274.25855 * 4 3 2 6 6 C 1.50697 * 126.34776 * 0.02562 * 5 4 3 7 7 N 1.46501 * 109.46984 * 264.23989 * 6 5 4 8 8 C 1.46762 * 124.35037 * 86.24822 * 7 6 5 9 9 C 1.54474 * 105.47527 * 197.01631 * 8 7 6 10 10 C 1.54628 * 101.76659 * 334.58635 * 9 8 7 11 11 C 1.34412 * 124.34798 * 265.95291 * 7 6 5 12 12 O 1.21283 * 124.94410 * 359.57114 * 11 7 6 13 13 N 1.30299 * 107.30123 * 179.73893 * 5 4 3 14 14 N 1.28527 * 110.05368 * 0.26429 * 13 5 4 15 15 C 1.31208 * 109.86374 * 0.02562 * 14 13 5 16 16 N 1.38581 * 126.47333 * 180.02562 * 15 14 13 17 17 C 1.46906 * 110.99736 * 250.88097 * 16 15 14 18 18 C 1.46903 * 110.99953 * 14.83456 * 16 15 14 19 19 H 1.08999 * 109.46989 * 55.00595 * 18 16 15 20 20 C 1.53001 * 109.47080 * 295.00010 * 18 16 15 21 21 C 1.50699 * 109.47006 * 175.00352 * 18 16 15 22 22 H 1.08004 * 120.00388 * 114.85282 * 21 18 16 23 23 C 1.37875 * 120.00176 * 294.85684 * 21 18 16 24 24 N 1.31512 * 120.00400 * 179.41550 * 23 21 18 25 25 Si 1.86798 * 119.99863 * 359.41094 * 23 21 18 26 26 H 1.48510 * 109.47077 * 91.42164 * 25 23 21 27 27 H 1.48498 * 109.47375 * 211.41897 * 25 23 21 28 28 H 1.48496 * 109.47438 * 331.42508 * 25 23 21 29 29 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47060 * 299.99967 * 1 2 3 31 31 H 1.09004 * 109.46991 * 60.00005 * 1 2 3 32 32 H 1.08992 * 109.47060 * 240.00033 * 2 1 3 33 33 H 1.08994 * 109.47158 * 120.00010 * 2 1 3 34 34 H 1.08996 * 109.47150 * 64.65043 * 3 2 1 35 35 H 1.08993 * 109.47042 * 304.64502 * 3 2 1 36 36 H 1.08992 * 109.47159 * 144.24188 * 6 5 4 37 37 H 1.09002 * 109.46920 * 24.23797 * 6 5 4 38 38 H 1.08995 * 110.24520 * 316.02046 * 8 7 6 39 39 H 1.09005 * 110.24753 * 77.93055 * 8 7 6 40 40 H 1.08999 * 110.97225 * 92.70213 * 9 8 7 41 41 H 1.09002 * 110.97299 * 216.46463 * 9 8 7 42 42 H 1.08997 * 110.49081 * 143.47387 * 10 9 8 43 43 H 1.09004 * 110.49037 * 265.98940 * 10 9 8 44 44 H 1.09006 * 109.46987 * 53.44918 * 17 16 15 45 45 H 1.09006 * 109.47028 * 173.44250 * 17 16 15 46 46 H 1.08994 * 109.47133 * 293.44101 * 17 16 15 47 47 H 1.08995 * 109.46899 * 186.02516 * 20 18 16 48 48 H 1.08993 * 109.47240 * 306.03012 * 20 18 16 49 49 H 1.09004 * 109.46701 * 66.02869 * 20 18 16 50 50 H 0.97003 * 120.00311 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5007 1.4441 -0.1119 5 6 4.4068 1.3346 0.9064 6 6 4.0896 1.1875 2.3723 7 7 4.1311 2.5032 3.0153 8 6 2.9978 3.4341 3.0704 9 6 3.6088 4.8064 3.4307 10 6 4.9015 4.3915 4.1708 11 6 5.2103 3.0105 3.6355 12 8 6.2771 2.4446 3.7474 13 7 5.5952 1.3750 0.3737 14 7 5.5023 1.5070 -0.9014 15 6 4.2394 1.5589 -1.2534 16 7 3.7483 1.6968 -2.5420 17 6 3.1581 3.0273 -2.7408 18 6 4.7970 1.4321 -3.5361 19 1 5.2297 0.4483 -3.3546 20 6 5.8884 2.4984 -3.4224 21 6 4.1994 1.4706 -4.9190 22 1 4.5023 2.2370 -5.6172 23 6 3.2658 0.5275 -5.2931 24 7 2.7357 0.5679 -6.4959 25 14 2.7538 -0.8077 -4.0913 26 1 1.5718 -0.3504 -3.3172 27 1 2.4073 -2.0420 -4.8407 28 1 3.8752 -1.0923 -3.1602 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.7462 1.9317 0.9287 35 1 1.6102 1.9798 -0.8454 36 1 4.8244 0.5317 2.8390 37 1 3.0943 0.7581 2.4873 38 1 2.5034 3.4843 2.1003 39 1 2.2899 3.1216 3.8381 40 1 3.8403 5.3784 2.5322 41 1 2.9457 5.3680 4.0888 42 1 5.7118 5.0830 3.9403 43 1 4.7294 4.3519 5.2465 44 1 3.8828 3.7918 -2.4607 45 1 2.8862 3.1512 -3.7891 46 1 2.2674 3.1260 -2.1204 47 1 6.6111 2.3658 -4.2274 48 1 5.4384 3.4883 -3.4974 49 1 6.3931 2.4006 -2.4612 50 1 2.0786 -0.0954 -6.7590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001381756004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:10 Heat of formation + Delta-G solvation = 64.801994 kcal Electronic energy + Delta-G solvation = -31307.543861 eV Core-core repulsion = 27372.025998 eV Total energy + Delta-G solvation = -3935.517863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62926 -40.44001 -37.50635 -36.60823 -36.10355 -33.66178 -32.69411 -32.27596 -30.15035 -29.33561 -27.86304 -27.20430 -26.44178 -25.59123 -24.81980 -22.36903 -22.19189 -21.50774 -20.72524 -19.55970 -19.32518 -17.19910 -17.04866 -16.89023 -16.46558 -15.75762 -15.62019 -15.48217 -15.38621 -14.52026 -14.31186 -13.99537 -13.90868 -13.77615 -13.67705 -13.28672 -13.15916 -12.89767 -12.69160 -12.60319 -12.48150 -12.26816 -12.08386 -11.82830 -11.68847 -11.61364 -11.34810 -11.31117 -11.01734 -10.81943 -10.74554 -10.60645 -10.33045 -9.97824 -9.82818 -9.74245 -9.56204 -9.29034 -9.11248 -8.90707 -8.68750 -7.56753 -6.19255 -4.26221 1.93482 2.40031 2.61761 2.84642 3.33545 3.38133 3.41462 3.50834 4.04876 4.12560 4.33839 4.37289 4.43082 4.46944 4.50495 4.67706 4.68522 4.76449 4.93672 5.09024 5.11243 5.14976 5.23467 5.28681 5.33107 5.36470 5.47852 5.48391 5.61763 5.63145 5.74120 5.79306 5.91264 5.97511 6.07993 6.11798 6.18559 6.24660 6.40619 6.58633 6.60010 6.74768 6.87569 6.90082 7.15713 7.26623 7.50476 7.65701 8.01693 8.05962 8.43152 8.84101 9.24691 9.44571 10.90020 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.004137 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.382718 B = 6766.094068 C = 7569.482864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.110 3.890 4 N -0.480 5.480 5 C 0.122 3.878 6 C 0.225 3.775 7 N -0.617 5.617 8 C 0.100 3.900 9 C -0.131 4.131 10 C -0.154 4.154 11 C 0.519 3.481 12 O -0.514 6.514 13 N -0.263 5.263 14 N -0.324 5.324 15 C 0.386 3.614 16 N -0.461 5.461 17 C 0.039 3.961 18 C 0.185 3.815 19 H 0.054 0.946 20 C -0.171 4.171 21 C -0.510 4.510 22 H 0.079 0.921 23 C 0.087 3.913 24 N -0.889 5.889 25 Si 0.904 3.096 26 H -0.275 1.275 27 H -0.304 1.304 28 H -0.269 1.269 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.029 0.971 45 H 0.105 0.895 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.038 0.962 49 H 0.071 0.929 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 6.372 21.385 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C -0.013 4.013 4 N -0.176 5.176 5 C -0.146 4.146 6 C 0.100 3.900 7 N -0.353 5.353 8 C -0.023 4.023 9 C -0.169 4.169 10 C -0.194 4.194 11 C 0.306 3.694 12 O -0.388 6.388 13 N -0.103 5.103 14 N -0.169 5.169 15 C 0.031 3.969 16 N -0.187 5.187 17 C -0.108 4.108 18 C 0.082 3.918 19 H 0.072 0.928 20 C -0.230 4.230 21 C -0.549 4.549 22 H 0.097 0.903 23 C -0.119 4.119 24 N -0.526 5.526 25 Si 0.733 3.267 26 H -0.201 1.201 27 H -0.232 1.232 28 H -0.194 1.194 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.047 0.953 45 H 0.123 0.877 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.089 0.911 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.691 5.570 21.078 22.805 hybrid contribution -1.503 -0.277 0.433 1.589 sum -8.194 5.293 21.511 23.620 Atomic orbital electron populations 1.21673 0.94180 1.02517 1.02098 1.21926 0.96946 0.95614 1.03553 1.21958 0.76383 0.99033 1.03948 1.46385 1.07877 1.56583 1.06755 1.24791 0.86469 1.10571 0.92797 1.19376 1.03414 0.84196 0.82978 1.48298 1.13538 1.17838 1.55623 1.22121 0.88991 0.89059 1.02105 1.22575 0.96575 0.96243 1.01479 1.22323 0.99742 0.95405 1.01925 1.20921 0.83138 0.87929 0.77386 1.90772 1.24497 1.65600 1.57968 1.74002 1.19387 1.15084 1.01839 1.74787 1.13911 1.23785 1.04377 1.23532 0.86789 0.99029 0.87582 1.60042 1.34855 1.28156 0.95607 1.22263 0.96868 0.86857 1.04821 1.19910 0.86635 0.96145 0.89079 0.92819 1.22455 0.99743 0.98656 1.02186 1.20967 1.24310 1.15006 0.94597 0.90292 1.25041 0.94809 0.97306 0.94711 1.69936 1.28039 1.35672 1.18924 0.86374 0.79521 0.79977 0.80790 1.20062 1.23195 1.19413 0.91985 0.92537 0.91989 0.90546 0.91511 0.89787 0.88089 0.86713 0.88985 0.90863 0.90666 0.89990 0.89029 0.87965 0.87815 0.95263 0.87657 0.93667 0.92892 0.94279 0.91070 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.14 -1.69 6.26 -26.73 -0.17 -1.86 16 3 C 0.11 1.32 5.74 -4.04 -0.02 1.30 16 4 N -0.48 -7.79 2.81 -114.09 -0.32 -8.11 16 5 C 0.12 2.00 7.65 -154.01 -1.18 0.82 16 6 C 0.22 2.66 6.30 -5.19 -0.03 2.63 16 7 N -0.62 -6.60 2.91 -173.79 -0.51 -7.11 16 8 C 0.10 0.68 7.35 -3.13 -0.02 0.65 16 9 C -0.13 -0.76 7.18 -25.10 -0.18 -0.94 16 10 C -0.15 -1.20 6.86 -26.74 -0.18 -1.38 16 11 C 0.52 6.55 8.02 -10.86 -0.09 6.46 16 12 O -0.51 -8.94 17.53 5.56 0.10 -8.84 16 13 N -0.26 -5.47 12.18 32.99 0.40 -5.07 16 14 N -0.32 -7.22 8.99 30.31 0.27 -6.94 16 15 C 0.39 7.85 6.65 -318.88 -2.12 5.73 16 16 N -0.46 -9.82 2.85 -176.07 -0.50 -10.32 16 17 C 0.04 0.72 8.54 60.07 0.51 1.23 16 18 C 0.18 4.43 1.44 -68.86 -0.10 4.33 16 19 H 0.05 1.42 6.77 -51.93 -0.35 1.07 16 20 C -0.17 -3.78 8.52 37.16 0.32 -3.46 16 21 C -0.51 -13.68 7.67 -34.44 -0.26 -13.94 16 22 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 23 C 0.09 2.39 5.47 -17.82 -0.10 2.30 16 24 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 25 Si 0.90 22.26 26.37 -169.99 -4.48 17.77 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 28 H -0.27 -6.85 6.36 56.52 0.36 -6.49 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 34 H 0.08 0.71 6.77 -51.93 -0.35 0.35 16 35 H 0.10 1.28 5.92 -51.93 -0.31 0.98 16 36 H 0.11 1.46 7.84 -51.93 -0.41 1.05 16 37 H 0.09 0.77 7.64 -51.93 -0.40 0.38 16 38 H 0.07 0.50 6.96 -51.93 -0.36 0.14 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.53 6.72 -51.93 -0.35 0.18 16 45 H 0.10 2.15 6.79 -51.93 -0.35 1.80 16 46 H 0.04 0.70 6.11 -51.93 -0.32 0.38 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.04 0.81 6.31 -51.93 -0.33 0.49 16 49 H 0.07 1.60 5.55 -51.93 -0.29 1.31 16 50 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -35.48 390.88 -9.68 -45.16 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.05 Total: -0.14 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -3.26 Total: 2.87 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.12 Total: -62.71 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.10 Total: -8.84 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.48 Total: 17.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.48 -9.68 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381756004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.962 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds