Wall clock time and date at job start Tue Mar 31 2020 19:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46584 * 2 1 4 4 N 1.46502 * 109.46515 * 184.64584 * 3 2 1 5 5 C 1.36744 * 127.13756 * 274.25855 * 4 3 2 6 6 C 1.50697 * 126.34776 * 0.02562 * 5 4 3 7 7 N 1.46501 * 109.46984 * 264.23989 * 6 5 4 8 8 C 1.46762 * 124.35037 * 86.24822 * 7 6 5 9 9 C 1.54474 * 105.47527 * 197.01631 * 8 7 6 10 10 C 1.54628 * 101.76659 * 334.58635 * 9 8 7 11 11 C 1.34412 * 124.34798 * 265.95291 * 7 6 5 12 12 O 1.21283 * 124.94410 * 359.57114 * 11 7 6 13 13 N 1.30299 * 107.30123 * 179.73893 * 5 4 3 14 14 N 1.28527 * 110.05368 * 0.26429 * 13 5 4 15 15 C 1.31208 * 109.86374 * 0.02562 * 14 13 5 16 16 N 1.38581 * 126.47333 * 180.02562 * 15 14 13 17 17 C 1.46906 * 110.99736 * 250.88097 * 16 15 14 18 18 C 1.46903 * 110.99953 * 14.83456 * 16 15 14 19 19 H 1.08999 * 109.46989 * 55.00595 * 18 16 15 20 20 C 1.53001 * 109.47080 * 295.00010 * 18 16 15 21 21 C 1.50699 * 109.47006 * 175.00352 * 18 16 15 22 22 H 1.08004 * 120.00388 * 114.85282 * 21 18 16 23 23 C 1.37875 * 120.00176 * 294.85684 * 21 18 16 24 24 N 1.31512 * 120.00400 * 179.41550 * 23 21 18 25 25 Si 1.86798 * 119.99863 * 359.41094 * 23 21 18 26 26 H 1.48510 * 109.47077 * 91.42164 * 25 23 21 27 27 H 1.48498 * 109.47375 * 211.41897 * 25 23 21 28 28 H 1.48496 * 109.47438 * 331.42508 * 25 23 21 29 29 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47060 * 299.99967 * 1 2 3 31 31 H 1.09004 * 109.46991 * 60.00005 * 1 2 3 32 32 H 1.08992 * 109.47060 * 240.00033 * 2 1 3 33 33 H 1.08994 * 109.47158 * 120.00010 * 2 1 3 34 34 H 1.08996 * 109.47150 * 64.65043 * 3 2 1 35 35 H 1.08993 * 109.47042 * 304.64502 * 3 2 1 36 36 H 1.08992 * 109.47159 * 144.24188 * 6 5 4 37 37 H 1.09002 * 109.46920 * 24.23797 * 6 5 4 38 38 H 1.08995 * 110.24520 * 316.02046 * 8 7 6 39 39 H 1.09005 * 110.24753 * 77.93055 * 8 7 6 40 40 H 1.08999 * 110.97225 * 92.70213 * 9 8 7 41 41 H 1.09002 * 110.97299 * 216.46463 * 9 8 7 42 42 H 1.08997 * 110.49081 * 143.47387 * 10 9 8 43 43 H 1.09004 * 110.49037 * 265.98940 * 10 9 8 44 44 H 1.09006 * 109.46987 * 53.44918 * 17 16 15 45 45 H 1.09006 * 109.47028 * 173.44250 * 17 16 15 46 46 H 1.08994 * 109.47133 * 293.44101 * 17 16 15 47 47 H 1.08995 * 109.46899 * 186.02516 * 20 18 16 48 48 H 1.08993 * 109.47240 * 306.03012 * 20 18 16 49 49 H 1.09004 * 109.46701 * 66.02869 * 20 18 16 50 50 H 0.97003 * 120.00311 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5007 1.4441 -0.1119 5 6 4.4068 1.3346 0.9064 6 6 4.0896 1.1875 2.3723 7 7 4.1311 2.5032 3.0153 8 6 2.9978 3.4341 3.0704 9 6 3.6088 4.8064 3.4307 10 6 4.9015 4.3915 4.1708 11 6 5.2103 3.0105 3.6355 12 8 6.2771 2.4446 3.7474 13 7 5.5952 1.3750 0.3737 14 7 5.5023 1.5070 -0.9014 15 6 4.2394 1.5589 -1.2534 16 7 3.7483 1.6968 -2.5420 17 6 3.1581 3.0273 -2.7408 18 6 4.7970 1.4321 -3.5361 19 1 5.2297 0.4483 -3.3546 20 6 5.8884 2.4984 -3.4224 21 6 4.1994 1.4706 -4.9190 22 1 4.5023 2.2370 -5.6172 23 6 3.2658 0.5275 -5.2931 24 7 2.7357 0.5679 -6.4959 25 14 2.7538 -0.8077 -4.0913 26 1 1.5718 -0.3504 -3.3172 27 1 2.4073 -2.0420 -4.8407 28 1 3.8752 -1.0923 -3.1602 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.7462 1.9317 0.9287 35 1 1.6102 1.9798 -0.8454 36 1 4.8244 0.5317 2.8390 37 1 3.0943 0.7581 2.4873 38 1 2.5034 3.4843 2.1003 39 1 2.2899 3.1216 3.8381 40 1 3.8403 5.3784 2.5322 41 1 2.9457 5.3680 4.0888 42 1 5.7118 5.0830 3.9403 43 1 4.7294 4.3519 5.2465 44 1 3.8828 3.7918 -2.4607 45 1 2.8862 3.1512 -3.7891 46 1 2.2674 3.1260 -2.1204 47 1 6.6111 2.3658 -4.2274 48 1 5.4384 3.4883 -3.4974 49 1 6.3931 2.4006 -2.4612 50 1 2.0786 -0.0954 -6.7590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001381756004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:09 Heat of formation + Delta-G solvation = 43.165931 kcal Electronic energy + Delta-G solvation = -31308.482071 eV Core-core repulsion = 27372.025998 eV Total energy + Delta-G solvation = -3936.456073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.05365 -41.27375 -39.22730 -37.59451 -37.17173 -34.81329 -34.33340 -33.52975 -31.76188 -30.76684 -28.52452 -28.34217 -27.63914 -27.32506 -26.40723 -23.33615 -23.15047 -22.71674 -21.91228 -21.10470 -20.43489 -18.95237 -18.28228 -17.92578 -17.49470 -17.18303 -16.97244 -16.67426 -16.30302 -16.17327 -15.54153 -15.29252 -15.19192 -14.80016 -14.74360 -14.66504 -14.39822 -13.97458 -13.83149 -13.64603 -13.53435 -13.39127 -13.27366 -13.14143 -12.87758 -12.76003 -12.50480 -12.44576 -12.36095 -12.32093 -12.03667 -11.88460 -11.81219 -11.75513 -11.38472 -11.18520 -11.06473 -10.89840 -10.82241 -10.52226 -9.91649 -9.19503 -8.35205 -6.45351 0.65394 1.19039 1.34159 1.36696 1.50843 1.55950 1.71447 2.23014 2.35940 2.75780 3.19676 3.29442 3.40253 3.51555 3.61675 3.77891 3.84514 3.98470 4.01615 4.13705 4.18499 4.21668 4.31717 4.37827 4.42447 4.44619 4.55512 4.65741 4.69402 4.69993 4.75204 4.76147 4.84290 4.88656 4.97709 5.02051 5.07901 5.08094 5.16677 5.21024 5.24231 5.31223 5.32336 5.43658 5.54390 5.72274 5.84813 6.07482 6.22733 6.46890 6.67656 7.12045 7.28430 7.78268 8.77566 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.004137 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.382718 B = 6766.094068 C = 7569.482864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.141 4.141 3 C 0.100 3.900 4 N -0.468 5.468 5 C 0.153 3.847 6 C 0.223 3.777 7 N -0.615 5.615 8 C 0.093 3.907 9 C -0.122 4.122 10 C -0.147 4.147 11 C 0.502 3.498 12 O -0.577 6.577 13 N -0.318 5.318 14 N -0.361 5.361 15 C 0.367 3.633 16 N -0.464 5.464 17 C 0.043 3.957 18 C 0.197 3.803 19 H 0.024 0.976 20 C -0.160 4.160 21 C -0.509 4.509 22 H 0.049 0.951 23 C 0.048 3.952 24 N -0.929 5.929 25 Si 0.959 3.041 26 H -0.250 1.250 27 H -0.306 1.306 28 H -0.287 1.287 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.031 0.969 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.047 0.953 48 H 0.048 0.952 49 H 0.069 0.931 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.805 7.403 25.178 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C -0.021 4.021 4 N -0.163 5.163 5 C -0.117 4.117 6 C 0.098 3.902 7 N -0.349 5.349 8 C -0.028 4.028 9 C -0.159 4.159 10 C -0.187 4.187 11 C 0.291 3.709 12 O -0.456 6.456 13 N -0.157 5.157 14 N -0.205 5.205 15 C 0.010 3.990 16 N -0.189 5.189 17 C -0.103 4.103 18 C 0.093 3.907 19 H 0.042 0.958 20 C -0.219 4.219 21 C -0.547 4.547 22 H 0.067 0.933 23 C -0.154 4.154 24 N -0.568 5.568 25 Si 0.788 3.212 26 H -0.174 1.174 27 H -0.235 1.235 28 H -0.213 1.213 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.153 0.847 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.158 0.842 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.115 0.885 43 H 0.148 0.852 44 H 0.050 0.950 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.291 6.640 24.883 27.733 hybrid contribution -0.378 -0.552 -0.638 0.924 sum -10.669 6.088 24.245 27.179 Atomic orbital electron populations 1.21664 0.91909 1.03091 1.03306 1.21934 0.98821 0.94985 1.02209 1.22426 0.73438 0.99773 1.06421 1.46529 1.09488 1.55252 1.05057 1.25655 0.85281 1.06359 0.94425 1.19639 1.05576 0.85269 0.79736 1.48446 1.14476 1.17823 1.54182 1.22519 0.88029 0.88428 1.03799 1.22630 0.95780 0.96090 1.01434 1.22365 1.00798 0.92018 1.03547 1.21880 0.82555 0.89440 0.77003 1.90735 1.27002 1.67417 1.60442 1.73935 1.22100 1.18227 1.01473 1.74636 1.15566 1.24759 1.05580 1.23248 0.87140 1.00577 0.88033 1.59639 1.33642 1.29770 0.95888 1.22288 0.98200 0.85620 1.04224 1.19505 0.87439 0.95281 0.88499 0.95755 1.22321 0.99140 0.98567 1.01843 1.20982 1.23985 1.14070 0.95673 0.93270 1.25592 0.94940 0.98994 0.95832 1.70023 1.29323 1.36907 1.20498 0.85516 0.79350 0.77641 0.78692 1.17442 1.23454 1.21301 0.91833 0.88998 0.93089 0.95150 0.89694 0.84693 0.88499 0.88074 0.84201 0.90280 0.86832 0.91155 0.85331 0.88539 0.85213 0.95025 0.89830 0.89932 0.93342 0.93349 0.91280 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.14 -2.83 6.26 30.60 0.19 -2.64 16 3 C 0.10 1.97 5.74 86.38 0.50 2.47 16 4 N -0.47 -14.09 2.81 -514.86 -1.45 -15.54 16 5 C 0.15 4.74 7.65 137.64 1.05 5.79 16 6 C 0.22 4.58 6.30 85.63 0.54 5.12 16 7 N -0.62 -11.04 2.91 -822.34 -2.40 -13.43 16 8 C 0.09 0.72 7.35 86.83 0.64 1.36 16 9 C -0.12 -0.83 7.18 31.65 0.23 -0.60 16 10 C -0.15 -1.86 6.86 30.59 0.21 -1.65 16 11 C 0.50 11.87 8.02 87.90 0.71 12.58 16 12 O -0.58 -20.39 17.53 -3.04 -0.05 -20.44 16 13 N -0.32 -13.37 12.18 -49.53 -0.60 -13.97 16 14 N -0.36 -16.40 8.99 -58.01 -0.52 -16.92 16 15 C 0.37 14.79 6.65 260.11 1.73 16.52 16 16 N -0.46 -19.74 2.85 -710.97 -2.02 -21.77 16 17 C 0.04 1.56 8.54 127.69 1.09 2.65 16 18 C 0.20 9.75 1.44 44.17 0.06 9.82 16 19 H 0.02 1.35 6.77 -2.39 -0.02 1.33 16 20 C -0.16 -7.28 8.52 71.98 0.61 -6.67 16 21 C -0.51 -28.25 7.67 25.60 0.20 -28.05 16 22 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 23 C 0.05 2.71 5.47 84.65 0.46 3.17 16 24 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 25 Si 0.96 46.93 26.37 68.60 1.81 48.74 16 26 H -0.25 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 28 H -0.29 -14.80 6.36 99.48 0.63 -14.17 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.37 8.02 -2.39 -0.02 1.36 16 34 H 0.14 1.31 6.77 -2.39 -0.02 1.30 16 35 H 0.10 2.05 5.92 -2.39 -0.01 2.03 16 36 H 0.10 2.43 7.84 -2.39 -0.02 2.42 16 37 H 0.14 1.53 7.64 -2.39 -0.02 1.51 16 38 H 0.08 0.57 6.96 -2.39 -0.02 0.56 16 39 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.03 1.12 6.72 -2.38 -0.02 1.10 16 45 H 0.08 3.42 6.79 -2.38 -0.02 3.41 16 46 H 0.08 2.35 6.11 -2.39 -0.01 2.33 16 47 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.05 2.06 6.31 -2.39 -0.02 2.05 16 49 H 0.07 3.21 5.55 -2.39 -0.01 3.20 16 50 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -85.33 390.88 4.86 -80.47 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.86 Total: 9.43 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 8.93 Total: 18.57 kcal Atomic # 7 Polarization: -130.07 SS G_CDS: -6.69 Total: -136.77 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.81 Total: 48.74 kcal Total: -85.33 4.86 -80.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381756004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.635 kcal (2) G-P(sol) polarization free energy of solvation -85.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds