Wall clock time and date at job start Tue Mar 31 2020 19:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46661 * 2 1 4 4 N 1.46509 * 109.46698 * 184.75139 * 3 2 1 5 5 C 1.36737 * 127.13439 * 267.89539 * 4 3 2 6 6 C 1.50703 * 126.34787 * 0.02562 * 5 4 3 7 7 N 1.46500 * 109.47214 * 263.86398 * 6 5 4 8 8 C 1.46759 * 124.35039 * 85.67419 * 7 6 5 9 9 C 1.54487 * 105.47220 * 197.01611 * 8 7 6 10 10 C 1.54630 * 101.76350 * 334.58052 * 9 8 7 11 11 C 1.34416 * 124.34559 * 265.36829 * 7 6 5 12 12 O 1.21281 * 124.94664 * 359.58037 * 11 7 6 13 13 N 1.30292 * 107.30321 * 179.76022 * 5 4 3 14 14 N 1.28524 * 110.05465 * 0.23584 * 13 5 4 15 15 C 1.31218 * 109.86315 * 0.02562 * 14 13 5 16 16 N 1.38569 * 126.47603 * 179.97438 * 15 14 13 17 17 C 1.46902 * 111.00488 * 258.07178 * 16 15 14 18 18 C 1.46906 * 111.00013 * 22.02724 * 16 15 14 19 19 H 1.08991 * 109.47039 * 300.00106 * 18 16 15 20 20 C 1.53003 * 109.47074 * 59.99653 * 18 16 15 21 21 C 1.50701 * 109.47244 * 179.97438 * 18 16 15 22 22 H 1.07996 * 119.99903 * 0.02562 * 21 18 16 23 23 C 1.37874 * 119.99910 * 180.02562 * 21 18 16 24 24 N 1.31517 * 120.00011 * 179.97438 * 23 21 18 25 25 Si 1.86802 * 120.00106 * 359.97438 * 23 21 18 26 26 H 1.48501 * 109.47075 * 89.99936 * 25 23 21 27 27 H 1.48501 * 109.47218 * 210.00302 * 25 23 21 28 28 H 1.48499 * 109.47126 * 329.99980 * 25 23 21 29 29 H 1.09000 * 109.47391 * 300.00190 * 1 2 3 30 30 H 1.08996 * 109.46713 * 60.00513 * 1 2 3 31 31 H 1.09005 * 109.46806 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47410 * 239.99495 * 2 1 3 33 33 H 1.09002 * 109.47145 * 119.99490 * 2 1 3 34 34 H 1.09000 * 109.47703 * 64.74910 * 3 2 1 35 35 H 1.09005 * 109.47294 * 304.74606 * 3 2 1 36 36 H 1.09001 * 109.46720 * 143.86136 * 6 5 4 37 37 H 1.09001 * 109.47148 * 23.86203 * 6 5 4 38 38 H 1.09006 * 110.24494 * 316.01265 * 8 7 6 39 39 H 1.09002 * 110.24941 * 77.92594 * 8 7 6 40 40 H 1.09001 * 110.96801 * 92.70124 * 9 8 7 41 41 H 1.09003 * 110.96738 * 216.46085 * 9 8 7 42 42 H 1.08995 * 110.48210 * 143.47558 * 10 9 8 43 43 H 1.08997 * 110.48476 * 265.99016 * 10 9 8 44 44 H 1.08995 * 109.46644 * 66.40801 * 17 16 15 45 45 H 1.08997 * 109.47206 * 186.40705 * 17 16 15 46 46 H 1.08998 * 109.46798 * 306.41161 * 17 16 15 47 47 H 1.09004 * 109.47061 * 300.00660 * 20 18 16 48 48 H 1.09007 * 109.46925 * 59.99966 * 20 18 16 49 49 H 1.08994 * 109.47235 * 179.97438 * 20 18 16 50 50 H 0.96999 * 120.00030 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5005 1.4441 -0.1144 5 6 4.4086 1.4550 0.9078 6 6 4.0943 1.4671 2.3817 7 7 4.1339 2.8449 2.8781 8 6 3.0022 3.7777 2.8232 9 6 3.6136 5.1803 3.0367 10 6 4.8999 4.8465 3.8273 11 6 5.2096 3.4151 3.4477 12 8 6.2744 2.8634 3.6285 13 7 5.5960 1.4470 0.3715 14 7 5.5007 1.4370 -0.9101 15 6 4.2369 1.4386 -1.2632 16 7 3.7433 1.4303 -2.5580 17 6 3.2954 2.7706 -2.9593 18 6 4.7420 0.9054 -3.4988 19 1 5.6338 1.5313 -3.4687 20 6 5.1105 -0.5264 -3.1051 21 6 4.1704 0.9111 -4.8932 22 1 3.1659 1.2693 -5.0636 23 6 4.9299 0.4591 -5.9514 24 7 4.4309 0.4637 -7.1683 25 14 6.6676 -0.1597 -5.6569 26 1 6.6334 -1.6185 -5.3808 27 1 7.4955 0.0966 -6.8628 28 1 7.2555 0.5507 -4.4929 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.7477 1.9313 0.9294 35 1 1.6088 1.9803 -0.8444 36 1 4.8315 0.8672 2.9153 37 1 3.1002 1.0507 2.5446 38 1 2.5151 3.7229 1.8496 39 1 2.2881 3.5515 3.6150 40 1 3.8528 5.6509 2.0831 41 1 2.9468 5.8110 3.6248 42 1 5.7133 5.5078 3.5290 43 1 4.7197 4.9245 4.8995 44 1 4.1550 3.4379 -3.0197 45 1 2.8096 2.7148 -3.9334 46 1 2.5893 3.1534 -2.2225 47 1 5.5237 -0.5310 -2.0964 48 1 4.2187 -1.1525 -3.1351 49 1 5.8512 -0.9161 -3.8034 50 1 4.9654 0.1460 -7.9128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001381756038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:13 Heat of formation + Delta-G solvation = 68.994453 kcal Electronic energy + Delta-G solvation = -30825.841710 eV Core-core repulsion = 26890.505645 eV Total energy + Delta-G solvation = -3935.336064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.71191 -40.47068 -37.38143 -36.63457 -36.13146 -33.71559 -32.89342 -32.31961 -30.33491 -29.75774 -27.89012 -27.24531 -26.49342 -25.23930 -24.50152 -22.47165 -22.22432 -21.88438 -20.81087 -19.65809 -19.41619 -17.23770 -17.11853 -16.92885 -16.43920 -15.96542 -15.63152 -15.38529 -15.17249 -14.83774 -14.43083 -14.04759 -13.96918 -13.81390 -13.52278 -13.39533 -13.17049 -12.98601 -12.71733 -12.65929 -12.45396 -12.35561 -12.09145 -11.87230 -11.81521 -11.66595 -11.36964 -11.21201 -11.07719 -10.95292 -10.76361 -10.67016 -10.26361 -10.11089 -10.00043 -9.84030 -9.50329 -9.40717 -9.14306 -8.80384 -8.62099 -7.72361 -6.14681 -4.15828 1.85507 2.34530 2.56010 2.79025 3.29643 3.34420 3.40913 3.48301 4.02162 4.10009 4.28202 4.31638 4.38340 4.40208 4.46950 4.64196 4.65970 4.73265 4.91985 5.05442 5.08998 5.12079 5.18556 5.24654 5.29456 5.34258 5.45410 5.46203 5.48221 5.60893 5.71672 5.73867 5.87888 5.96635 6.03400 6.08325 6.16662 6.21534 6.41091 6.44377 6.49268 6.60863 6.83703 6.85704 6.95793 7.14024 7.43452 7.61322 7.88954 7.98740 8.48388 8.85323 9.15905 9.46300 10.96899 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.003611 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.084940 B = 7753.234957 C = 8612.408582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.113 3.887 4 N -0.475 5.475 5 C 0.125 3.875 6 C 0.225 3.775 7 N -0.618 5.618 8 C 0.100 3.900 9 C -0.131 4.131 10 C -0.154 4.154 11 C 0.519 3.481 12 O -0.514 6.514 13 N -0.261 5.261 14 N -0.322 5.322 15 C 0.385 3.615 16 N -0.451 5.451 17 C 0.045 3.955 18 C 0.199 3.801 19 H 0.024 0.976 20 C -0.146 4.146 21 C -0.516 4.516 22 H 0.085 0.915 23 C 0.079 3.921 24 N -0.895 5.895 25 Si 0.879 3.121 26 H -0.277 1.277 27 H -0.295 1.295 28 H -0.260 1.260 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.033 0.967 45 H 0.100 0.900 46 H 0.045 0.955 47 H 0.039 0.961 48 H 0.053 0.947 49 H 0.047 0.953 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 7.248 22.230 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C -0.010 4.010 4 N -0.170 5.170 5 C -0.143 4.143 6 C 0.100 3.900 7 N -0.354 5.354 8 C -0.023 4.023 9 C -0.169 4.169 10 C -0.194 4.194 11 C 0.306 3.694 12 O -0.388 6.388 13 N -0.102 5.102 14 N -0.167 5.167 15 C 0.029 3.971 16 N -0.176 5.176 17 C -0.102 4.102 18 C 0.094 3.906 19 H 0.042 0.958 20 C -0.204 4.204 21 C -0.554 4.554 22 H 0.103 0.897 23 C -0.124 4.124 24 N -0.532 5.532 25 Si 0.709 3.291 26 H -0.204 1.204 27 H -0.223 1.223 28 H -0.185 1.185 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.052 0.948 45 H 0.119 0.881 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.470 6.531 21.954 24.786 hybrid contribution -0.040 -0.062 -0.117 0.139 sum -9.510 6.469 21.837 24.681 Atomic orbital electron populations 1.21669 0.94263 1.02486 1.01986 1.21878 0.96732 0.95342 1.03795 1.21915 0.76100 0.99252 1.03734 1.46318 1.07997 1.56817 1.05904 1.24867 0.86384 1.10191 0.92842 1.19385 1.03532 0.82722 0.84361 1.48296 1.13871 1.12818 1.60389 1.22122 0.88991 0.88865 1.02280 1.22581 0.96632 0.96086 1.01600 1.22324 0.99822 0.94865 1.02401 1.20932 0.83086 0.88775 0.76569 1.90775 1.24547 1.69017 1.54454 1.74030 1.19421 1.15294 1.01455 1.74831 1.14391 1.22794 1.04640 1.23080 0.86516 0.99406 0.88068 1.58943 1.39813 1.23332 0.95517 1.22314 0.99292 0.86403 1.02213 1.19750 0.88898 0.91975 0.90006 0.95808 1.22161 1.00293 0.98745 0.99185 1.20850 1.02586 1.44086 0.87897 0.89746 1.24806 0.97895 0.94859 0.94880 1.69856 1.37402 1.46820 0.99145 0.86960 0.85106 0.79583 0.77447 1.20404 1.22281 1.18513 0.92787 0.91969 0.91982 0.89937 0.91716 0.89811 0.88371 0.86609 0.88877 0.90854 0.90623 0.89974 0.88998 0.87940 0.87780 0.94821 0.88126 0.93640 0.94227 0.92820 0.93477 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.14 -1.38 6.26 -26.73 -0.17 -1.55 16 3 C 0.11 1.16 5.87 -4.04 -0.02 1.14 16 4 N -0.47 -7.09 2.81 -114.08 -0.32 -7.41 16 5 C 0.13 1.95 7.65 -154.02 -1.18 0.77 16 6 C 0.22 2.49 6.25 -5.19 -0.03 2.46 16 7 N -0.62 -6.29 2.92 -173.77 -0.51 -6.80 16 8 C 0.10 0.62 7.35 -3.12 -0.02 0.60 16 9 C -0.13 -0.71 7.18 -25.09 -0.18 -0.89 16 10 C -0.15 -1.16 6.86 -26.74 -0.18 -1.34 16 11 C 0.52 6.38 8.02 -10.86 -0.09 6.30 16 12 O -0.51 -8.80 17.53 5.56 0.10 -8.70 16 13 N -0.26 -5.36 12.18 32.99 0.40 -4.95 16 14 N -0.32 -7.19 10.10 30.31 0.31 -6.88 16 15 C 0.39 7.52 5.99 -318.89 -1.91 5.61 16 16 N -0.45 -9.24 4.66 -176.08 -0.82 -10.06 16 17 C 0.04 0.81 9.09 60.07 0.55 1.35 16 18 C 0.20 4.86 1.33 -68.86 -0.09 4.76 16 19 H 0.02 0.64 6.96 -51.93 -0.36 0.28 16 20 C -0.15 -3.49 8.50 37.16 0.32 -3.17 16 21 C -0.52 -13.98 8.53 -34.44 -0.29 -14.27 16 22 H 0.08 2.39 6.64 -52.49 -0.35 2.04 16 23 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 24 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 25 Si 0.88 22.41 24.37 -169.99 -4.14 18.26 16 26 H -0.28 -6.92 6.87 56.52 0.39 -6.53 16 27 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.26 -6.68 6.53 56.52 0.37 -6.31 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.59 6.69 -51.93 -0.35 0.24 16 35 H 0.10 1.03 6.82 -51.93 -0.35 0.68 16 36 H 0.12 1.40 7.82 -51.93 -0.41 0.99 16 37 H 0.09 0.69 7.57 -51.93 -0.39 0.30 16 38 H 0.07 0.45 7.22 -51.93 -0.37 0.08 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 1.90 6.33 -51.93 -0.33 1.58 16 46 H 0.04 0.65 6.83 -51.93 -0.35 0.30 16 47 H 0.04 0.92 6.29 -51.93 -0.33 0.60 16 48 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 49 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 50 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -36.50 391.73 -9.36 -45.86 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -8.02 Total: -2.52 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -3.04 Total: 3.15 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.17 Total: -61.95 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.10 Total: -8.70 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.14 Total: 18.26 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.50 -9.36 -45.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381756038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.856 kcal (2) G-P(sol) polarization free energy of solvation -36.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds