Wall clock time and date at job start Tue Mar 31 2020 19:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46661 * 2 1 4 4 N 1.46509 * 109.46698 * 184.75139 * 3 2 1 5 5 C 1.36737 * 127.13439 * 267.89539 * 4 3 2 6 6 C 1.50703 * 126.34787 * 0.02562 * 5 4 3 7 7 N 1.46500 * 109.47214 * 263.86398 * 6 5 4 8 8 C 1.46759 * 124.35039 * 85.67419 * 7 6 5 9 9 C 1.54487 * 105.47220 * 197.01611 * 8 7 6 10 10 C 1.54630 * 101.76350 * 334.58052 * 9 8 7 11 11 C 1.34416 * 124.34559 * 265.36829 * 7 6 5 12 12 O 1.21281 * 124.94664 * 359.58037 * 11 7 6 13 13 N 1.30292 * 107.30321 * 179.76022 * 5 4 3 14 14 N 1.28524 * 110.05465 * 0.23584 * 13 5 4 15 15 C 1.31218 * 109.86315 * 0.02562 * 14 13 5 16 16 N 1.38569 * 126.47603 * 179.97438 * 15 14 13 17 17 C 1.46902 * 111.00488 * 258.07178 * 16 15 14 18 18 C 1.46906 * 111.00013 * 22.02724 * 16 15 14 19 19 H 1.08991 * 109.47039 * 300.00106 * 18 16 15 20 20 C 1.53003 * 109.47074 * 59.99653 * 18 16 15 21 21 C 1.50701 * 109.47244 * 179.97438 * 18 16 15 22 22 H 1.07996 * 119.99903 * 0.02562 * 21 18 16 23 23 C 1.37874 * 119.99910 * 180.02562 * 21 18 16 24 24 N 1.31517 * 120.00011 * 179.97438 * 23 21 18 25 25 Si 1.86802 * 120.00106 * 359.97438 * 23 21 18 26 26 H 1.48501 * 109.47075 * 89.99936 * 25 23 21 27 27 H 1.48501 * 109.47218 * 210.00302 * 25 23 21 28 28 H 1.48499 * 109.47126 * 329.99980 * 25 23 21 29 29 H 1.09000 * 109.47391 * 300.00190 * 1 2 3 30 30 H 1.08996 * 109.46713 * 60.00513 * 1 2 3 31 31 H 1.09005 * 109.46806 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47410 * 239.99495 * 2 1 3 33 33 H 1.09002 * 109.47145 * 119.99490 * 2 1 3 34 34 H 1.09000 * 109.47703 * 64.74910 * 3 2 1 35 35 H 1.09005 * 109.47294 * 304.74606 * 3 2 1 36 36 H 1.09001 * 109.46720 * 143.86136 * 6 5 4 37 37 H 1.09001 * 109.47148 * 23.86203 * 6 5 4 38 38 H 1.09006 * 110.24494 * 316.01265 * 8 7 6 39 39 H 1.09002 * 110.24941 * 77.92594 * 8 7 6 40 40 H 1.09001 * 110.96801 * 92.70124 * 9 8 7 41 41 H 1.09003 * 110.96738 * 216.46085 * 9 8 7 42 42 H 1.08995 * 110.48210 * 143.47558 * 10 9 8 43 43 H 1.08997 * 110.48476 * 265.99016 * 10 9 8 44 44 H 1.08995 * 109.46644 * 66.40801 * 17 16 15 45 45 H 1.08997 * 109.47206 * 186.40705 * 17 16 15 46 46 H 1.08998 * 109.46798 * 306.41161 * 17 16 15 47 47 H 1.09004 * 109.47061 * 300.00660 * 20 18 16 48 48 H 1.09007 * 109.46925 * 59.99966 * 20 18 16 49 49 H 1.08994 * 109.47235 * 179.97438 * 20 18 16 50 50 H 0.96999 * 120.00030 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5005 1.4441 -0.1144 5 6 4.4086 1.4550 0.9078 6 6 4.0943 1.4671 2.3817 7 7 4.1339 2.8449 2.8781 8 6 3.0022 3.7777 2.8232 9 6 3.6136 5.1803 3.0367 10 6 4.8999 4.8465 3.8273 11 6 5.2096 3.4151 3.4477 12 8 6.2744 2.8634 3.6285 13 7 5.5960 1.4470 0.3715 14 7 5.5007 1.4370 -0.9101 15 6 4.2369 1.4386 -1.2632 16 7 3.7433 1.4303 -2.5580 17 6 3.2954 2.7706 -2.9593 18 6 4.7420 0.9054 -3.4988 19 1 5.6338 1.5313 -3.4687 20 6 5.1105 -0.5264 -3.1051 21 6 4.1704 0.9111 -4.8932 22 1 3.1659 1.2693 -5.0636 23 6 4.9299 0.4591 -5.9514 24 7 4.4309 0.4637 -7.1683 25 14 6.6676 -0.1597 -5.6569 26 1 6.6334 -1.6185 -5.3808 27 1 7.4955 0.0966 -6.8628 28 1 7.2555 0.5507 -4.4929 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.7477 1.9313 0.9294 35 1 1.6088 1.9803 -0.8444 36 1 4.8315 0.8672 2.9153 37 1 3.1002 1.0507 2.5446 38 1 2.5151 3.7229 1.8496 39 1 2.2881 3.5515 3.6150 40 1 3.8528 5.6509 2.0831 41 1 2.9468 5.8110 3.6248 42 1 5.7133 5.5078 3.5290 43 1 4.7197 4.9245 4.8995 44 1 4.1550 3.4379 -3.0197 45 1 2.8096 2.7148 -3.9334 46 1 2.5893 3.1534 -2.2225 47 1 5.5237 -0.5310 -2.0964 48 1 4.2187 -1.1525 -3.1351 49 1 5.8512 -0.9161 -3.8034 50 1 4.9654 0.1460 -7.9128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001381756038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:12 Heat of formation + Delta-G solvation = 44.576449 kcal Electronic energy + Delta-G solvation = -30826.900554 eV Core-core repulsion = 26890.505645 eV Total energy + Delta-G solvation = -3936.394909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.08207 -41.27763 -39.07707 -37.58396 -37.12867 -35.00692 -34.38248 -33.45115 -32.19018 -31.00701 -28.53396 -28.38637 -27.44243 -27.01490 -26.15783 -23.79931 -23.07386 -22.80297 -21.92194 -21.15411 -20.42782 -18.99683 -18.21260 -17.94531 -17.55241 -17.35920 -16.89284 -16.60799 -16.36988 -16.13222 -15.71066 -15.29022 -15.17317 -14.77709 -14.73116 -14.60406 -14.40081 -14.11255 -13.82141 -13.70631 -13.66614 -13.34030 -13.21796 -13.14909 -12.91284 -12.78737 -12.53109 -12.45870 -12.35520 -12.31174 -12.18883 -11.88728 -11.73858 -11.65428 -11.56477 -11.26474 -11.03709 -10.90537 -10.81072 -10.48118 -9.92194 -9.33755 -8.36717 -6.39480 0.62308 1.18175 1.23189 1.31487 1.41928 1.54186 1.69120 2.22320 2.24909 2.80033 2.99345 3.24901 3.40467 3.56927 3.62334 3.84585 3.88527 3.92336 4.03265 4.18406 4.21220 4.26588 4.35120 4.40628 4.44265 4.47643 4.52042 4.53888 4.63005 4.66607 4.70263 4.78170 4.84693 4.88400 4.88942 4.96788 5.00284 5.07942 5.15199 5.21043 5.21582 5.27859 5.40304 5.42065 5.44183 5.63689 5.78244 6.06465 6.13210 6.50003 6.64365 7.11433 7.24927 7.74958 8.77878 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.003611 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.084940 B = 7753.234957 C = 8612.408582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.103 3.897 4 N -0.459 5.459 5 C 0.157 3.843 6 C 0.223 3.777 7 N -0.616 5.616 8 C 0.093 3.907 9 C -0.122 4.122 10 C -0.148 4.148 11 C 0.501 3.499 12 O -0.578 6.578 13 N -0.319 5.319 14 N -0.370 5.370 15 C 0.370 3.630 16 N -0.448 5.448 17 C 0.047 3.953 18 C 0.209 3.791 19 H -0.003 1.003 20 C -0.136 4.136 21 C -0.507 4.507 22 H 0.067 0.933 23 C 0.036 3.964 24 N -0.931 5.931 25 Si 0.926 3.074 26 H -0.267 1.267 27 H -0.290 1.290 28 H -0.269 1.269 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.069 0.931 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.018 0.982 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.039 0.961 48 H 0.057 0.943 49 H 0.038 0.962 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 8.201 25.310 30.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C -0.017 4.017 4 N -0.154 5.154 5 C -0.114 4.114 6 C 0.097 3.903 7 N -0.350 5.350 8 C -0.027 4.027 9 C -0.160 4.160 10 C -0.188 4.188 11 C 0.291 3.709 12 O -0.457 6.457 13 N -0.159 5.159 14 N -0.214 5.214 15 C 0.012 3.988 16 N -0.172 5.172 17 C -0.099 4.099 18 C 0.102 3.898 19 H 0.014 0.986 20 C -0.193 4.193 21 C -0.546 4.546 22 H 0.085 0.915 23 C -0.164 4.164 24 N -0.570 5.570 25 Si 0.754 3.246 26 H -0.193 1.193 27 H -0.217 1.217 28 H -0.194 1.194 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.162 0.838 38 H 0.098 0.902 39 H 0.133 0.867 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.114 0.886 43 H 0.148 0.852 44 H 0.036 0.964 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.056 0.944 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.622 7.505 25.045 29.033 hybrid contribution 0.809 -0.298 -0.951 1.283 sum -11.813 7.207 24.095 27.786 Atomic orbital electron populations 1.21637 0.92046 1.02902 1.03189 1.21838 0.98506 0.94640 1.02352 1.22416 0.72905 1.00084 1.06321 1.46487 1.09670 1.55244 1.03973 1.25722 0.85207 1.05909 0.94526 1.19673 1.05813 0.83850 0.80933 1.48451 1.14740 1.12856 1.58933 1.22526 0.88040 0.88010 1.04171 1.22639 0.95843 0.96312 1.01211 1.22368 1.00859 0.91243 1.04338 1.21884 0.82531 0.90555 0.75944 1.90736 1.27092 1.70723 1.57114 1.73949 1.22346 1.18572 1.01006 1.74685 1.16474 1.24235 1.06015 1.22848 0.86771 1.00744 0.88457 1.58853 1.38244 1.24515 0.95630 1.22339 0.99368 0.85257 1.02963 1.19385 0.88642 0.92046 0.89751 0.98568 1.22018 1.00112 0.98346 0.98866 1.21011 1.01688 1.42581 0.89294 0.91508 1.25380 1.00729 0.95447 0.94811 1.69938 1.38760 1.48448 0.99893 0.86202 0.81819 0.79549 0.77000 1.19308 1.21708 1.19413 0.89745 0.92561 0.92062 0.94054 0.90598 0.84966 0.88243 0.88040 0.83828 0.90154 0.86700 0.91230 0.85297 0.88648 0.85170 0.96354 0.89418 0.89383 0.94183 0.92382 0.94388 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.13 -2.27 6.26 30.60 0.19 -2.08 16 3 C 0.10 1.71 5.87 86.38 0.51 2.22 16 4 N -0.46 -12.81 2.81 -514.84 -1.45 -14.26 16 5 C 0.16 4.65 7.65 137.64 1.05 5.70 16 6 C 0.22 4.30 6.25 85.63 0.54 4.83 16 7 N -0.62 -10.62 2.92 -822.29 -2.40 -13.02 16 8 C 0.09 0.65 7.35 86.84 0.64 1.29 16 9 C -0.12 -0.79 7.18 31.65 0.23 -0.56 16 10 C -0.15 -1.85 6.86 30.59 0.21 -1.64 16 11 C 0.50 11.73 8.02 87.90 0.71 12.43 16 12 O -0.58 -20.34 17.53 -3.03 -0.05 -20.39 16 13 N -0.32 -13.32 12.18 -49.54 -0.60 -13.92 16 14 N -0.37 -16.95 10.10 -58.01 -0.59 -17.53 16 15 C 0.37 14.40 5.99 260.12 1.56 15.96 16 16 N -0.45 -18.50 4.66 -711.01 -3.31 -21.81 16 17 C 0.05 1.71 9.09 127.69 1.16 2.87 16 18 C 0.21 10.43 1.33 44.17 0.06 10.49 16 19 H 0.00 -0.18 6.96 -2.39 -0.02 -0.20 16 20 C -0.14 -6.59 8.50 71.98 0.61 -5.98 16 21 C -0.51 -28.17 8.53 25.60 0.22 -27.95 16 22 H 0.07 3.89 6.64 -2.91 -0.02 3.87 16 23 C 0.04 2.08 5.45 84.65 0.46 2.54 16 24 N -0.93 -56.40 13.96 21.45 0.30 -56.10 16 25 Si 0.93 47.11 24.37 68.60 1.67 48.78 16 26 H -0.27 -13.05 6.87 99.48 0.68 -12.37 16 27 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 28 H -0.27 -13.98 6.53 99.48 0.65 -13.33 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.13 0.96 6.69 -2.39 -0.02 0.95 16 35 H 0.10 1.70 6.82 -2.38 -0.02 1.68 16 36 H 0.10 2.34 7.82 -2.39 -0.02 2.32 16 37 H 0.14 1.32 7.57 -2.39 -0.02 1.30 16 38 H 0.08 0.50 7.22 -2.38 -0.02 0.49 16 39 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.09 3.37 6.33 -2.39 -0.02 3.35 16 46 H 0.09 2.36 6.83 -2.39 -0.02 2.34 16 47 H 0.04 1.92 6.29 -2.39 -0.01 1.90 16 48 H 0.06 2.70 8.14 -2.38 -0.02 2.68 16 49 H 0.04 1.88 3.27 -2.39 -0.01 1.88 16 50 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -86.98 391.73 3.28 -83.70 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.86 Total: 5.28 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 8.85 Total: 19.26 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -8.04 Total: -136.64 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.67 Total: 48.78 kcal Total: -86.98 3.28 -83.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381756038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.275 kcal (2) G-P(sol) polarization free energy of solvation -86.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds