Wall clock time and date at job start Tue Mar 31 2020 19:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46950 * 2 1 4 4 N 1.46503 * 109.46943 * 180.02562 * 3 2 1 5 5 C 1.37956 * 127.08174 * 274.06910 * 4 3 2 6 6 C 1.46962 * 126.49566 * 359.97438 * 5 4 3 7 7 O 1.21671 * 119.99787 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00152 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.64912 * 359.69917 * 8 6 5 10 10 C 1.54315 * 107.27648 * 180.96570 * 9 8 6 11 11 C 1.55156 * 102.86392 * 22.52336 * 10 9 8 12 12 C 1.47424 * 125.65062 * 179.97438 * 8 6 5 13 13 N 1.31597 * 107.00902 * 179.86948 * 5 4 3 14 14 N 1.28540 * 109.69226 * 0.40283 * 13 5 4 15 15 C 1.31996 * 110.00961 * 359.74166 * 14 13 5 16 16 N 1.37783 * 126.27493 * 180.02562 * 15 14 13 17 17 C 1.46901 * 111.00008 * 306.63844 * 16 15 14 18 18 C 1.46899 * 110.99667 * 70.59261 * 16 15 14 19 19 H 1.08994 * 109.47769 * 55.00490 * 18 16 15 20 20 C 1.53007 * 109.47333 * 294.99565 * 18 16 15 21 21 C 1.50703 * 109.46837 * 175.00087 * 18 16 15 22 22 H 1.08003 * 120.00120 * 359.97438 * 21 18 16 23 23 C 1.37876 * 120.00223 * 180.02562 * 21 18 16 24 24 N 1.31509 * 119.99817 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 120.00247 * 179.97438 * 23 21 18 26 26 H 1.48508 * 109.46950 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47309 * 119.99891 * 25 23 21 28 28 H 1.48495 * 109.47378 * 239.99994 * 25 23 21 29 29 H 1.08999 * 109.47056 * 299.99979 * 1 2 3 30 30 H 1.09004 * 109.47497 * 59.99404 * 1 2 3 31 31 H 1.08995 * 109.47492 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47056 * 240.00021 * 2 1 3 33 33 H 1.08997 * 109.46699 * 120.00354 * 2 1 3 34 34 H 1.08997 * 109.47709 * 299.99735 * 3 2 1 35 35 H 1.08999 * 109.47224 * 60.00124 * 3 2 1 36 36 H 1.09002 * 109.88119 * 300.50803 * 9 8 6 37 37 H 1.09003 * 109.88498 * 61.67605 * 9 8 6 38 38 H 1.09003 * 110.92204 * 264.10767 * 10 9 8 39 39 H 1.08998 * 110.59023 * 140.78645 * 10 9 8 40 40 H 1.09000 * 110.99919 * 206.23112 * 11 10 9 41 41 H 1.08995 * 111.00088 * 82.37920 * 11 10 9 42 42 H 1.09001 * 110.36741 * 274.68153 * 12 8 6 43 43 H 1.08998 * 110.36326 * 36.88701 * 12 8 6 44 44 H 1.08998 * 109.46838 * 54.66362 * 17 16 15 45 45 H 1.08997 * 109.47074 * 174.66538 * 17 16 15 46 46 H 1.08998 * 109.47279 * 294.66547 * 17 16 15 47 47 H 1.08997 * 109.46400 * 60.00538 * 20 18 16 48 48 H 1.08998 * 109.46712 * 180.02562 * 20 18 16 49 49 H 1.08996 * 109.47063 * 300.00252 * 20 18 16 50 50 H 0.97005 * 119.99914 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3372 1.3642 1.0968 6 6 3.9223 1.2645 2.5031 7 8 2.7397 1.2442 2.7885 8 7 4.8518 1.1945 3.4766 9 6 6.3078 1.2015 3.2733 10 6 6.9654 1.0797 4.6640 11 6 5.8446 0.4338 5.5207 12 6 4.5768 1.0925 4.9214 13 7 5.5731 1.3935 0.6456 14 7 5.5640 1.4916 -0.6360 15 6 4.3206 1.5251 -1.0777 16 7 3.9254 1.6253 -2.3938 17 6 4.5583 2.7788 -3.0472 18 6 4.2111 0.3838 -3.1251 19 1 3.7463 -0.4567 -2.6099 20 6 5.7244 0.1676 -3.1916 21 6 3.6564 0.4851 -4.5227 22 1 3.1426 1.3819 -4.8361 23 6 3.8038 -0.5675 -5.4009 24 7 4.4290 -1.6597 -5.0192 25 14 3.1156 -0.4422 -7.1330 26 1 2.4630 0.8797 -7.3119 27 1 4.2194 -0.5858 -8.1159 28 1 2.1177 -1.5206 -7.3484 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 6.5989 0.3571 2.6483 37 1 6.6119 2.1362 2.8022 38 1 7.2328 2.0612 5.0554 39 1 7.8394 0.4300 4.6191 40 1 5.9590 0.6929 6.5732 41 1 5.8242 -0.6477 5.3861 42 1 4.4253 2.0833 5.3496 43 1 3.7024 0.4661 5.0978 44 1 5.6402 2.7128 -2.9325 45 1 4.3047 2.7802 -4.1072 46 1 4.1996 3.6992 -2.5866 47 1 6.1255 0.0943 -2.1808 48 1 5.9362 -0.7534 -3.7346 49 1 6.1891 1.0081 -3.7070 50 1 4.5324 -2.4004 -5.6370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401489055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:17 Heat of formation + Delta-G solvation = 62.182993 kcal Electronic energy + Delta-G solvation = -30772.292536 eV Core-core repulsion = 26836.661104 eV Total energy + Delta-G solvation = -3935.631431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67345 -39.89727 -37.55897 -37.27992 -35.76810 -32.98559 -32.31744 -32.07388 -29.98906 -29.07847 -28.51072 -26.72393 -25.46324 -25.28435 -24.62042 -22.51428 -21.84056 -21.59525 -21.19625 -19.52491 -19.47369 -17.33348 -16.78217 -16.67605 -16.23761 -15.98041 -15.49257 -15.24078 -14.81686 -14.70170 -14.31479 -13.70772 -13.69178 -13.55475 -13.44749 -13.00587 -12.94955 -12.51719 -12.41943 -12.26755 -12.22592 -11.66413 -11.52581 -11.48625 -11.36720 -11.32806 -11.16237 -10.98595 -10.97542 -10.86248 -10.75461 -10.62733 -10.36580 -10.18790 -10.14989 -10.01229 -9.77096 -8.96459 -8.88515 -8.67397 -8.50041 -7.82241 -6.12045 -4.18431 1.36654 2.22401 2.72321 3.07674 3.24251 3.32572 3.35683 3.38291 4.09787 4.28719 4.38300 4.50580 4.57293 4.68177 4.88399 5.04634 5.10237 5.14156 5.20299 5.35174 5.39964 5.43013 5.46044 5.49979 5.59698 5.68594 5.71594 5.76307 5.81936 5.84930 5.95500 5.99769 6.08910 6.16804 6.23101 6.28819 6.38069 6.43673 6.55451 6.76133 6.85913 6.98046 7.08388 7.24141 7.42288 7.55970 7.69220 7.84495 7.90805 8.18915 8.37286 8.84576 8.91338 9.46660 10.94737 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.003346 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.648004 B = 8366.787589 C = 9216.496982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.113 3.887 4 N -0.430 5.430 5 C 0.095 3.905 6 C 0.631 3.369 7 O -0.537 6.537 8 N -0.600 5.600 9 C 0.106 3.894 10 C -0.134 4.134 11 C -0.134 4.134 12 C 0.109 3.891 13 N -0.237 5.237 14 N -0.311 5.311 15 C 0.402 3.598 16 N -0.473 5.473 17 C 0.044 3.956 18 C 0.225 3.775 19 H 0.037 0.963 20 C -0.173 4.173 21 C -0.508 4.508 22 H 0.067 0.933 23 C 0.063 3.937 24 N -0.888 5.888 25 Si 0.901 3.099 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.093 0.907 46 H 0.045 0.955 47 H 0.032 0.968 48 H 0.087 0.913 49 H 0.033 0.967 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 5.459 17.906 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.010 4.010 4 N -0.120 5.120 5 C -0.170 4.170 6 C 0.417 3.583 7 O -0.413 6.413 8 N -0.334 5.334 9 C -0.017 4.017 10 C -0.172 4.172 11 C -0.172 4.172 12 C -0.013 4.013 13 N -0.087 5.087 14 N -0.160 5.160 15 C 0.047 3.953 16 N -0.199 5.199 17 C -0.104 4.104 18 C 0.121 3.879 19 H 0.055 0.945 20 C -0.232 4.232 21 C -0.547 4.547 22 H 0.085 0.915 23 C -0.139 4.139 24 N -0.526 5.526 25 Si 0.728 3.272 26 H -0.196 1.196 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.106 0.894 49 H 0.052 0.948 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.279 5.347 17.928 18.711 hybrid contribution -0.855 -0.230 -1.080 1.397 sum -0.576 5.117 16.848 17.618 Atomic orbital electron populations 1.21611 0.94265 1.02181 1.01930 1.21782 0.96940 0.95232 1.03212 1.22107 0.74061 0.99704 1.05080 1.46151 1.09145 1.51431 1.05305 1.23481 0.88153 1.15014 0.90375 1.15722 0.84405 0.76799 0.81362 1.90819 1.16007 1.51703 1.82795 1.48000 1.07271 1.71990 1.06173 1.22183 0.78326 1.03968 0.97198 1.22700 0.98248 1.01778 0.94447 1.22809 0.93984 1.00763 0.99673 1.22273 0.98864 1.01067 0.79070 1.74437 1.16269 1.13510 1.04486 1.75088 1.17148 1.21506 1.02253 1.22785 0.84961 0.97646 0.89938 1.59235 1.57259 1.08956 0.94470 1.22282 0.97671 0.89711 1.00699 1.19442 0.92977 0.82800 0.92658 0.94485 1.22449 0.98048 1.03193 0.99549 1.21020 1.36381 1.02042 0.95208 0.91454 1.24904 0.95101 0.95124 0.98806 1.69913 1.41723 1.05199 1.35760 0.86400 0.78689 0.78167 0.83919 1.19619 1.20987 1.21006 0.92597 0.92129 0.92216 0.90585 0.91685 0.87800 0.88180 0.90048 0.90237 0.90517 0.89749 0.89661 0.90396 0.91102 0.90110 0.93855 0.88797 0.93591 0.94880 0.89404 0.94779 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.13 -2.09 6.26 -26.73 -0.17 -2.26 16 3 C 0.11 1.80 5.55 -4.04 -0.02 1.78 16 4 N -0.43 -8.01 2.81 -115.15 -0.32 -8.33 16 5 C 0.09 1.72 7.75 -153.51 -1.19 0.53 16 6 C 0.63 10.18 7.83 -12.73 -0.10 10.08 16 7 O -0.54 -9.27 15.25 5.21 0.08 -9.19 16 8 N -0.60 -7.72 3.33 -171.95 -0.57 -8.29 16 9 C 0.11 1.18 5.53 -3.07 -0.02 1.16 16 10 C -0.13 -0.98 6.95 -24.90 -0.17 -1.15 16 11 C -0.13 -0.92 7.08 -24.57 -0.17 -1.09 16 12 C 0.11 1.03 6.91 -2.52 -0.02 1.02 16 13 N -0.24 -4.53 9.74 32.51 0.32 -4.22 16 14 N -0.31 -6.59 9.68 30.07 0.29 -6.30 16 15 C 0.40 8.32 6.13 -320.55 -1.96 6.36 16 16 N -0.47 -10.12 4.68 -176.46 -0.83 -10.94 16 17 C 0.04 0.85 8.65 60.07 0.52 1.37 16 18 C 0.23 5.56 2.31 -68.86 -0.16 5.40 16 19 H 0.04 1.03 8.11 -51.93 -0.42 0.61 16 20 C -0.17 -4.29 8.19 37.16 0.30 -3.98 16 21 C -0.51 -13.16 7.81 -34.44 -0.27 -13.43 16 22 H 0.07 1.71 6.81 -52.48 -0.36 1.35 16 23 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 24 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 25 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.10 1.62 8.08 -51.93 -0.42 1.20 16 35 H 0.10 1.51 6.74 -51.93 -0.35 1.16 16 36 H 0.08 1.03 7.66 -51.93 -0.40 0.63 16 37 H 0.08 0.96 7.76 -51.93 -0.40 0.55 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 44 H 0.04 0.86 6.52 -51.93 -0.34 0.52 16 45 H 0.09 1.84 6.29 -51.93 -0.33 1.52 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.03 0.80 5.93 -51.93 -0.31 0.49 16 48 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 49 H 0.03 0.81 6.60 -51.93 -0.34 0.47 16 50 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 392.32 15.07 5.91 5.91 Total: -1.00 -30.08 392.32 -10.85 -40.94 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.18 Total: 2.97 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.16 Total: 5.93 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.49 Total: -62.05 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.08 -10.85 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401489055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.121 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds