Wall clock time and date at job start Tue Mar 31 2020 18:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47190 * 2 1 4 4 C 1.53004 * 109.47380 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46890 * 180.02562 * 4 3 2 6 6 C 1.36738 * 127.14049 * 275.30109 * 5 4 3 7 7 C 1.50700 * 126.34342 * 359.97438 * 6 5 4 8 8 H 1.08998 * 110.21851 * 345.47106 * 7 6 5 9 9 C 1.54482 * 110.24655 * 107.49995 * 7 6 5 10 10 C 1.54632 * 101.76396 * 144.41426 * 9 7 6 11 11 C 1.51279 * 104.19827 * 335.20295 * 10 9 7 12 12 O 1.21281 * 124.94394 * 196.23402 * 11 10 9 13 13 N 1.34423 * 110.11600 * 16.25282 * 11 10 9 14 14 N 1.30290 * 107.31017 * 180.02562 * 6 5 4 15 15 N 1.28529 * 110.05353 * 359.72290 * 14 6 5 16 16 C 1.31219 * 109.85849 * 0.45851 * 15 14 6 17 17 N 1.38579 * 126.47373 * 179.82254 * 16 15 14 18 18 C 1.46901 * 110.99807 * 290.15406 * 17 16 15 19 19 C 1.46896 * 110.99925 * 54.10796 * 17 16 15 20 20 H 1.08997 * 109.47253 * 299.99565 * 19 17 16 21 21 C 1.53002 * 109.47319 * 60.00218 * 19 17 16 22 22 C 1.50705 * 109.47201 * 180.02562 * 19 17 16 23 23 H 1.08005 * 119.99245 * 359.97438 * 22 19 17 24 24 C 1.37870 * 120.00582 * 179.72623 * 22 19 17 25 25 N 1.31522 * 119.99732 * 0.27149 * 24 22 19 26 26 Si 1.86796 * 120.00450 * 180.27567 * 24 22 19 27 27 H 1.48501 * 109.46955 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47400 * 119.99743 * 26 24 22 29 29 H 1.48501 * 109.46930 * 239.99888 * 26 24 22 30 30 H 1.08997 * 109.47527 * 300.00073 * 1 2 3 31 31 H 1.09005 * 109.47449 * 60.00072 * 1 2 3 32 32 H 1.09000 * 109.47268 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47302 * 240.00134 * 2 1 3 34 34 H 1.08997 * 109.47522 * 120.00268 * 2 1 3 35 35 H 1.09005 * 109.46889 * 59.99881 * 3 2 1 36 36 H 1.09005 * 109.46866 * 300.00285 * 3 2 1 37 37 H 1.08991 * 109.47102 * 59.99996 * 4 3 2 38 38 H 1.09001 * 109.46848 * 299.99728 * 4 3 2 39 39 H 1.08998 * 110.96520 * 262.53103 * 9 7 6 40 40 H 1.09002 * 110.96580 * 26.29712 * 9 7 6 41 41 H 1.08993 * 110.48369 * 216.52192 * 10 9 7 42 42 H 1.09005 * 110.59643 * 93.93546 * 10 9 7 43 43 H 0.97001 * 124.34953 * 180.39261 * 13 11 10 44 44 H 1.08999 * 109.47045 * 189.81133 * 18 17 16 45 45 H 1.09003 * 109.47144 * 309.81166 * 18 17 16 46 46 H 1.08993 * 109.46942 * 69.81126 * 18 17 16 47 47 H 1.08996 * 109.47172 * 179.97438 * 21 19 17 48 48 H 1.08995 * 109.46825 * 300.00156 * 21 19 17 49 49 H 1.09005 * 109.46758 * 59.99816 * 21 19 17 50 50 H 0.96995 * 119.99956 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2379 3.6364 -1.0850 7 6 3.9692 3.2776 -2.5238 8 1 3.8515 2.1990 -2.6274 9 6 2.7043 4.0064 -3.0292 10 6 3.0801 4.3077 -4.4986 11 6 4.5927 4.3313 -4.4975 12 8 5.2807 4.8027 -5.3780 13 7 5.0632 3.7534 -3.3787 14 7 4.6856 4.7779 -0.6444 15 7 4.7946 4.7441 0.6358 16 6 4.4285 3.5662 1.0834 17 7 4.4147 3.1557 2.4069 18 6 5.7808 3.0026 2.9249 19 6 3.6376 4.0848 3.2381 20 1 4.0821 5.0785 3.1851 21 6 2.1964 4.1427 2.7274 22 6 3.6457 3.6071 4.6674 23 1 4.1749 2.7034 4.9317 24 6 2.9819 4.3263 5.6385 25 7 2.3371 5.4264 5.3165 26 14 2.9984 3.7383 7.4114 27 1 3.7878 2.4844 7.5097 28 1 3.6137 4.7799 8.2727 29 1 1.6064 3.4830 7.8612 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6765 1.9563 0.8900 36 1 1.6765 1.9563 -0.8900 37 1 3.9329 0.9289 -0.8908 38 1 3.9336 0.9286 0.8892 39 1 1.8316 3.3557 -2.9753 40 1 2.5367 4.9284 -2.4724 41 1 2.6836 5.2764 -4.8027 42 1 2.7113 3.5217 -5.1576 43 1 6.0048 3.6623 -3.1641 44 1 5.7473 2.5167 3.9000 45 1 6.3647 2.3932 2.2351 46 1 6.2440 3.9843 3.0238 47 1 1.6197 4.8317 3.3444 48 1 2.1909 4.4884 1.6938 49 1 1.7520 3.1488 2.7805 50 1 1.8698 5.9322 5.9996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434663247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:11 Heat of formation + Delta-G solvation = 43.971801 kcal Electronic energy + Delta-G solvation = -30628.276007 eV Core-core repulsion = 26691.854879 eV Total energy + Delta-G solvation = -3936.421128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74934 -40.32155 -37.23525 -36.69001 -36.36040 -33.70434 -32.95481 -31.54353 -30.37727 -29.44432 -29.02127 -27.25234 -25.56353 -24.50848 -24.18903 -22.91275 -21.78221 -21.41746 -20.72622 -20.39368 -19.58562 -17.45590 -17.10977 -16.62135 -16.14286 -16.02186 -15.62500 -15.39320 -14.99004 -14.67857 -14.29466 -14.02577 -13.91014 -13.65796 -13.50223 -13.28145 -13.18899 -12.93419 -12.75911 -12.43193 -12.22752 -11.88372 -11.80173 -11.61282 -11.40601 -11.32984 -11.21213 -11.11250 -10.98172 -10.83171 -10.76615 -10.37606 -10.34650 -10.18219 -10.15597 -10.06431 -9.81462 -9.45087 -9.15380 -8.60467 -8.58168 -7.80526 -6.13125 -4.20035 1.92823 2.32740 2.54279 3.08797 3.22635 3.29767 3.31268 3.33832 3.95458 4.14864 4.25422 4.33242 4.48025 4.54730 4.58469 4.69254 4.73550 4.89704 4.95691 5.04933 5.19390 5.26461 5.38032 5.40734 5.52095 5.52895 5.60787 5.63662 5.71409 5.75277 5.84578 5.96668 5.99964 6.09136 6.18689 6.22653 6.33683 6.51098 6.54996 6.67127 6.76005 6.83583 6.87660 7.03495 7.30601 7.56752 7.67466 7.84000 8.06012 8.11382 8.36845 8.83544 9.10300 9.45300 10.93773 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.003493 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.455610 B = 8013.691103 C = 9126.642277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.137 4.137 4 C 0.112 3.888 5 N -0.463 5.463 6 C 0.129 3.871 7 C 0.233 3.767 8 H 0.096 0.904 9 C -0.123 4.123 10 C -0.154 4.154 11 C 0.526 3.474 12 O -0.534 6.534 13 N -0.712 5.712 14 N -0.268 5.268 15 N -0.316 5.316 16 C 0.392 3.608 17 N -0.473 5.473 18 C 0.052 3.948 19 C 0.226 3.774 20 H 0.022 0.978 21 C -0.128 4.128 22 C -0.512 4.512 23 H 0.066 0.934 24 C 0.063 3.937 25 N -0.887 5.887 26 Si 0.900 3.100 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.413 0.587 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.036 0.964 47 H 0.091 0.909 48 H 0.002 0.998 49 H 0.032 0.968 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 -11.878 -14.488 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.175 4.175 4 C -0.011 4.011 5 N -0.157 5.157 6 C -0.139 4.139 7 C 0.125 3.875 8 H 0.114 0.886 9 C -0.162 4.162 10 C -0.194 4.194 11 C 0.312 3.688 12 O -0.411 6.411 13 N -0.368 5.368 14 N -0.109 5.109 15 N -0.160 5.160 16 C 0.036 3.964 17 N -0.200 5.200 18 C -0.096 4.096 19 C 0.122 3.878 20 H 0.040 0.960 21 C -0.186 4.186 22 C -0.551 4.551 23 H 0.085 0.915 24 C -0.139 4.139 25 N -0.525 5.525 26 Si 0.728 3.272 27 H -0.197 1.197 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.252 0.748 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.109 0.891 48 H 0.021 0.979 49 H 0.051 0.949 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.137 -10.510 -14.854 18.321 hybrid contribution 0.157 -0.950 1.341 1.651 sum -1.980 -11.460 -13.513 17.828 Atomic orbital electron populations 1.21744 0.95394 1.01606 1.02178 1.21413 0.96390 0.95601 1.02210 1.22036 0.93374 0.98167 1.03955 1.21886 0.95619 0.79070 1.04502 1.46388 1.49254 1.13574 1.06456 1.24376 1.08496 0.90004 0.91026 1.19615 0.87874 0.98686 0.81360 0.88636 1.22733 0.95966 1.02525 0.94951 1.22369 0.93530 1.05637 0.97879 1.20787 0.91133 0.75869 0.80965 1.90762 1.64824 1.46275 1.39225 1.46121 1.09247 1.60527 1.20900 1.73973 1.15472 1.17446 1.04053 1.74804 1.21833 1.16978 1.02391 1.22929 0.96892 0.86864 0.89683 1.59307 1.15149 1.50934 0.94608 1.22191 0.86288 1.00637 1.00483 1.19430 0.89221 0.89132 0.90034 0.95975 1.21803 0.99488 1.00639 0.96696 1.21070 1.33339 1.09955 0.90701 0.91545 1.24908 0.95086 0.94776 0.99150 1.69908 1.33394 1.15625 1.33559 0.86412 0.77798 0.78717 0.84305 1.19678 1.20972 1.20981 0.92259 0.92850 0.92710 0.92082 0.91333 0.89799 0.91689 0.89817 0.87664 0.88588 0.88702 0.87517 0.87527 0.74775 0.89292 0.93958 0.94486 0.89052 0.97912 0.94910 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.15 0.37 -0.86 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.14 -1.40 5.54 -26.73 -0.15 -1.54 16 4 C 0.11 1.21 5.91 -4.04 -0.02 1.19 16 5 N -0.46 -6.87 2.81 -114.09 -0.32 -7.19 16 6 C 0.13 1.86 6.86 -154.02 -1.06 0.80 16 7 C 0.23 2.29 3.91 -68.16 -0.27 2.03 16 8 H 0.10 0.67 7.14 -51.93 -0.37 0.30 16 9 C -0.12 -1.03 6.68 -25.10 -0.17 -1.20 16 10 C -0.15 -1.23 6.86 -26.74 -0.18 -1.42 16 11 C 0.53 6.30 8.43 -10.86 -0.09 6.21 16 12 O -0.53 -8.58 18.03 5.56 0.10 -8.48 16 13 N -0.71 -7.79 5.86 -53.88 -0.32 -8.10 16 14 N -0.27 -5.04 12.17 32.99 0.40 -4.64 16 15 N -0.32 -6.80 12.00 30.32 0.36 -6.43 16 16 C 0.39 7.55 5.05 -318.87 -1.61 5.94 16 17 N -0.47 -9.64 4.63 -176.08 -0.81 -10.45 16 18 C 0.05 0.96 9.10 60.07 0.55 1.51 16 19 C 0.23 5.50 1.95 -68.86 -0.13 5.37 16 20 H 0.02 0.63 8.01 -51.93 -0.42 0.22 16 21 C -0.13 -3.04 8.85 37.16 0.33 -2.71 16 22 C -0.51 -13.11 7.98 -34.44 -0.27 -13.39 16 23 H 0.07 1.65 6.41 -52.48 -0.34 1.32 16 24 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 25 N -0.89 -24.47 11.33 55.43 0.63 -23.84 16 26 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.15 7.53 -51.93 -0.39 0.76 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.63 7.35 -51.93 -0.38 0.25 16 38 H 0.11 1.22 8.11 -51.93 -0.42 0.80 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.02 7.91 -51.93 -0.41 0.61 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.41 4.53 8.96 -40.82 -0.37 4.16 16 44 H 0.09 1.64 6.46 -51.93 -0.34 1.31 16 45 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 46 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 47 H 0.09 2.40 6.08 -51.93 -0.32 2.09 16 48 H 0.00 0.04 7.22 -51.93 -0.38 -0.33 16 49 H 0.03 0.73 7.53 -51.93 -0.39 0.34 16 50 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 402.42 15.07 6.06 6.06 Total: -1.00 -32.85 402.42 -10.17 -43.02 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.29 Total: 2.41 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.97 Total: 2.39 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.06 Total: -60.65 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.10 Total: -8.48 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.85 -10.17 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434663247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.991 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds