Wall clock time and date at job start Tue Mar 31 2020 18:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47190 * 2 1 4 4 C 1.53004 * 109.47380 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46890 * 180.02562 * 4 3 2 6 6 C 1.36738 * 127.14049 * 275.30109 * 5 4 3 7 7 C 1.50700 * 126.34342 * 359.97438 * 6 5 4 8 8 H 1.08998 * 110.21851 * 345.47106 * 7 6 5 9 9 C 1.54482 * 110.24655 * 107.49995 * 7 6 5 10 10 C 1.54632 * 101.76396 * 144.41426 * 9 7 6 11 11 C 1.51279 * 104.19827 * 335.20295 * 10 9 7 12 12 O 1.21281 * 124.94394 * 196.23402 * 11 10 9 13 13 N 1.34423 * 110.11600 * 16.25282 * 11 10 9 14 14 N 1.30290 * 107.31017 * 180.02562 * 6 5 4 15 15 N 1.28529 * 110.05353 * 359.72290 * 14 6 5 16 16 C 1.31219 * 109.85849 * 0.45851 * 15 14 6 17 17 N 1.38579 * 126.47373 * 179.82254 * 16 15 14 18 18 C 1.46901 * 110.99807 * 290.15406 * 17 16 15 19 19 C 1.46896 * 110.99925 * 54.10796 * 17 16 15 20 20 H 1.08997 * 109.47253 * 299.99565 * 19 17 16 21 21 C 1.53002 * 109.47319 * 60.00218 * 19 17 16 22 22 C 1.50705 * 109.47201 * 180.02562 * 19 17 16 23 23 H 1.08005 * 119.99245 * 359.97438 * 22 19 17 24 24 C 1.37870 * 120.00582 * 179.72623 * 22 19 17 25 25 N 1.31522 * 119.99732 * 0.27149 * 24 22 19 26 26 Si 1.86796 * 120.00450 * 180.27567 * 24 22 19 27 27 H 1.48501 * 109.46955 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47400 * 119.99743 * 26 24 22 29 29 H 1.48501 * 109.46930 * 239.99888 * 26 24 22 30 30 H 1.08997 * 109.47527 * 300.00073 * 1 2 3 31 31 H 1.09005 * 109.47449 * 60.00072 * 1 2 3 32 32 H 1.09000 * 109.47268 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47302 * 240.00134 * 2 1 3 34 34 H 1.08997 * 109.47522 * 120.00268 * 2 1 3 35 35 H 1.09005 * 109.46889 * 59.99881 * 3 2 1 36 36 H 1.09005 * 109.46866 * 300.00285 * 3 2 1 37 37 H 1.08991 * 109.47102 * 59.99996 * 4 3 2 38 38 H 1.09001 * 109.46848 * 299.99728 * 4 3 2 39 39 H 1.08998 * 110.96520 * 262.53103 * 9 7 6 40 40 H 1.09002 * 110.96580 * 26.29712 * 9 7 6 41 41 H 1.08993 * 110.48369 * 216.52192 * 10 9 7 42 42 H 1.09005 * 110.59643 * 93.93546 * 10 9 7 43 43 H 0.97001 * 124.34953 * 180.39261 * 13 11 10 44 44 H 1.08999 * 109.47045 * 189.81133 * 18 17 16 45 45 H 1.09003 * 109.47144 * 309.81166 * 18 17 16 46 46 H 1.08993 * 109.46942 * 69.81126 * 18 17 16 47 47 H 1.08996 * 109.47172 * 179.97438 * 21 19 17 48 48 H 1.08995 * 109.46825 * 300.00156 * 21 19 17 49 49 H 1.09005 * 109.46758 * 59.99816 * 21 19 17 50 50 H 0.96995 * 119.99956 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2379 3.6364 -1.0850 7 6 3.9692 3.2776 -2.5238 8 1 3.8515 2.1990 -2.6274 9 6 2.7043 4.0064 -3.0292 10 6 3.0801 4.3077 -4.4986 11 6 4.5927 4.3313 -4.4975 12 8 5.2807 4.8027 -5.3780 13 7 5.0632 3.7534 -3.3787 14 7 4.6856 4.7779 -0.6444 15 7 4.7946 4.7441 0.6358 16 6 4.4285 3.5662 1.0834 17 7 4.4147 3.1557 2.4069 18 6 5.7808 3.0026 2.9249 19 6 3.6376 4.0848 3.2381 20 1 4.0821 5.0785 3.1851 21 6 2.1964 4.1427 2.7274 22 6 3.6457 3.6071 4.6674 23 1 4.1749 2.7034 4.9317 24 6 2.9819 4.3263 5.6385 25 7 2.3371 5.4264 5.3165 26 14 2.9984 3.7383 7.4114 27 1 3.7878 2.4844 7.5097 28 1 3.6137 4.7799 8.2727 29 1 1.6064 3.4830 7.8612 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6765 1.9563 0.8900 36 1 1.6765 1.9563 -0.8900 37 1 3.9329 0.9289 -0.8908 38 1 3.9336 0.9286 0.8892 39 1 1.8316 3.3557 -2.9753 40 1 2.5367 4.9284 -2.4724 41 1 2.6836 5.2764 -4.8027 42 1 2.7113 3.5217 -5.1576 43 1 6.0048 3.6623 -3.1641 44 1 5.7473 2.5167 3.9000 45 1 6.3647 2.3932 2.2351 46 1 6.2440 3.9843 3.0238 47 1 1.6197 4.8317 3.3444 48 1 2.1909 4.4884 1.6938 49 1 1.7520 3.1488 2.7805 50 1 1.8698 5.9322 5.9996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434663247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:10 Heat of formation + Delta-G solvation = 22.124052 kcal Electronic energy + Delta-G solvation = -30629.223397 eV Core-core repulsion = 26691.854879 eV Total energy + Delta-G solvation = -3937.368518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.06937 -41.22226 -38.84192 -37.72966 -37.31192 -34.95837 -34.59502 -32.28573 -31.75970 -31.14328 -29.98008 -28.41990 -27.34421 -26.13947 -25.15856 -23.93074 -23.28424 -22.13837 -21.59389 -21.44725 -21.10407 -18.52859 -18.46718 -17.95449 -17.61043 -17.27688 -16.69864 -16.47991 -16.36678 -16.02748 -15.55525 -15.31944 -14.94594 -14.78873 -14.64437 -14.29714 -14.17736 -13.97434 -13.80178 -13.60164 -13.53235 -13.07518 -12.96072 -12.83300 -12.77114 -12.67021 -12.41896 -12.37805 -12.20266 -12.19535 -12.06396 -12.01959 -11.85600 -11.59055 -11.39743 -11.09108 -11.02103 -10.93568 -10.59040 -10.41981 -9.98398 -9.53904 -8.14950 -6.29029 0.67266 1.20252 1.43969 1.45984 1.56991 1.58414 1.75220 2.37339 2.41704 2.92626 3.07661 3.17278 3.37369 3.58292 3.70846 3.82597 3.90216 4.01869 4.11476 4.19199 4.27394 4.34338 4.45168 4.54507 4.61705 4.68276 4.69668 4.72686 4.80312 4.83544 4.85624 4.91496 4.96552 5.01729 5.03287 5.10964 5.12017 5.14747 5.32079 5.37392 5.44030 5.52633 5.54905 5.64140 5.69097 5.87952 5.94524 5.96794 6.14396 6.61299 6.82017 7.15152 7.40472 7.73884 8.92277 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.003493 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.455610 B = 8013.691103 C = 9126.642277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.131 4.131 4 C 0.103 3.897 5 N -0.452 5.452 6 C 0.160 3.840 7 C 0.232 3.768 8 H 0.145 0.855 9 C -0.118 4.118 10 C -0.140 4.140 11 C 0.517 3.483 12 O -0.584 6.584 13 N -0.713 5.713 14 N -0.314 5.314 15 N -0.365 5.365 16 C 0.370 3.630 17 N -0.463 5.463 18 C 0.055 3.945 19 C 0.237 3.763 20 H -0.031 1.031 21 C -0.105 4.105 22 C -0.521 4.521 23 H 0.074 0.926 24 C 0.013 3.987 25 N -0.921 5.921 26 Si 0.967 3.033 27 H -0.259 1.259 28 H -0.286 1.286 29 H -0.280 1.280 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.145 0.855 43 H 0.410 0.590 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.012 0.988 47 H 0.062 0.938 48 H 0.000 1.000 49 H 0.041 0.959 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 -15.457 -16.168 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.169 4.169 4 C -0.018 4.018 5 N -0.145 5.145 6 C -0.109 4.109 7 C 0.124 3.876 8 H 0.163 0.837 9 C -0.157 4.157 10 C -0.180 4.180 11 C 0.306 3.694 12 O -0.464 6.464 13 N -0.366 5.366 14 N -0.154 5.154 15 N -0.208 5.208 16 C 0.012 3.988 17 N -0.189 5.189 18 C -0.093 4.093 19 C 0.131 3.869 20 H -0.013 1.013 21 C -0.163 4.163 22 C -0.559 4.559 23 H 0.092 0.908 24 C -0.186 4.186 25 N -0.560 5.560 26 Si 0.792 3.208 27 H -0.183 1.183 28 H -0.212 1.212 29 H -0.206 1.206 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.150 0.850 38 H 0.115 0.885 39 H 0.155 0.845 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.162 0.838 43 H 0.248 0.752 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.031 0.969 47 H 0.081 0.919 48 H 0.019 0.981 49 H 0.060 0.940 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.162 -14.131 -16.530 21.976 hybrid contribution 0.492 0.164 1.763 1.838 sum -2.670 -13.968 -14.767 20.501 Atomic orbital electron populations 1.21762 0.95598 1.02159 1.01593 1.21389 0.96118 0.94035 1.03382 1.21987 0.92742 0.99502 1.02708 1.22338 0.96089 0.76802 1.06561 1.46543 1.48183 1.14758 1.04979 1.25291 1.04551 0.88358 0.92719 1.20186 0.88018 1.01466 0.77901 0.83746 1.22796 0.96507 1.01955 0.94427 1.22406 0.90064 1.07286 0.98250 1.21514 0.92863 0.74720 0.80328 1.90736 1.66344 1.48309 1.41038 1.46239 1.09546 1.60065 1.20772 1.73880 1.18346 1.20085 1.03129 1.74674 1.23315 1.18794 1.04031 1.22751 0.98693 0.87467 0.89851 1.59198 1.15498 1.49114 0.95094 1.22200 0.85851 0.99791 1.01423 1.19056 0.89572 0.87424 0.90822 1.01287 1.21503 0.98873 1.00161 0.95768 1.21363 1.33050 1.10056 0.91412 0.90792 1.25755 0.94713 0.94786 1.03325 1.70062 1.34286 1.16879 1.34800 0.85371 0.77906 0.78494 0.79055 1.18251 1.21218 1.20611 0.94580 0.91761 0.91605 0.88876 0.92156 0.94127 0.89905 0.84951 0.88465 0.84535 0.91608 0.87205 0.83757 0.75177 0.89128 0.90999 0.96885 0.91906 0.98084 0.93988 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.11 -1.37 5.93 30.59 0.18 -1.19 16 3 C -0.13 -2.26 5.54 30.60 0.17 -2.09 16 4 C 0.10 1.85 5.91 86.38 0.51 2.36 16 5 N -0.45 -12.64 2.81 -514.86 -1.45 -14.09 16 6 C 0.16 4.36 6.86 137.64 0.94 5.30 16 7 C 0.23 3.68 3.91 44.70 0.17 3.85 16 8 H 0.15 1.02 7.14 -2.39 -0.02 1.01 16 9 C -0.12 -1.52 6.68 31.65 0.21 -1.31 16 10 C -0.14 -1.73 6.86 30.59 0.21 -1.52 16 11 C 0.52 11.44 8.43 87.90 0.74 12.18 16 12 O -0.58 -18.53 18.03 -3.03 -0.05 -18.58 16 13 N -0.71 -14.02 5.86 -442.95 -2.60 -16.61 16 14 N -0.31 -12.01 12.17 -49.54 -0.60 -12.62 16 15 N -0.36 -16.32 12.00 -58.00 -0.70 -17.02 16 16 C 0.37 14.45 5.05 260.11 1.31 15.76 16 17 N -0.46 -19.27 4.63 -711.00 -3.29 -22.56 16 18 C 0.05 2.08 9.10 127.69 1.16 3.24 16 19 C 0.24 12.06 1.95 44.17 0.09 12.15 16 20 H -0.03 -1.86 8.01 -2.39 -0.02 -1.88 16 21 C -0.10 -5.18 8.85 71.98 0.64 -4.54 16 22 C -0.52 -27.23 7.98 25.60 0.20 -27.03 16 23 H 0.07 3.68 6.41 -2.91 -0.02 3.67 16 24 C 0.01 0.72 5.31 84.65 0.45 1.17 16 25 N -0.92 -52.69 11.33 21.45 0.24 -52.45 16 26 Si 0.97 41.90 29.54 68.60 2.03 43.92 16 27 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 28 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 29 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 30 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.04 1.07 7.53 -2.38 -0.02 1.05 16 36 H 0.08 1.12 8.14 -2.38 -0.02 1.11 16 37 H 0.13 1.15 7.35 -2.39 -0.02 1.14 16 38 H 0.10 1.99 8.11 -2.39 -0.02 1.97 16 39 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 1.29 7.91 -2.39 -0.02 1.27 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.14 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.41 8.47 8.96 -92.71 -0.83 7.64 16 44 H 0.09 3.36 6.46 -2.39 -0.02 3.34 16 45 H 0.07 2.27 8.06 -2.39 -0.02 2.25 16 46 H 0.01 0.53 8.12 -2.39 -0.02 0.51 16 47 H 0.06 3.47 6.08 -2.39 -0.01 3.45 16 48 H 0.00 0.01 7.22 -2.39 -0.02 -0.01 16 49 H 0.04 1.94 7.53 -2.38 -0.02 1.92 16 50 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -79.03 402.42 1.41 -77.63 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.11 Total: 15.38 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 7.71 Total: 17.00 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -8.39 Total: -135.34 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.05 Total: -18.58 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -79.03 1.41 -77.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434663247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.749 kcal (2) G-P(sol) polarization free energy of solvation -79.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds