Wall clock time and date at job start Tue Mar 31 2020 19:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47532 * 2 1 4 4 N 1.46489 * 109.47083 * 180.02562 * 3 2 1 5 5 C 1.34782 * 119.99806 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00177 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00009 * 179.97438 * 5 4 3 8 8 N 1.46506 * 109.47217 * 179.97438 * 7 5 4 9 9 C 1.36729 * 127.13841 * 270.02225 * 8 7 5 10 10 C 1.50700 * 126.35084 * 359.96497 * 9 8 7 11 11 C 1.52996 * 117.49943 * 188.74778 * 10 9 8 12 12 C 1.52995 * 117.50153 * 120.08404 * 10 9 8 13 13 N 1.30299 * 107.30407 * 179.97438 * 9 8 7 14 14 N 1.28521 * 110.05616 * 359.97438 * 13 9 8 15 15 C 1.31224 * 109.85862 * 0.02562 * 14 13 9 16 16 N 1.38580 * 126.46974 * 180.02562 * 15 14 13 17 17 C 1.46908 * 110.99746 * 123.92995 * 16 15 14 18 18 C 1.46897 * 111.00389 * 359.97438 * 16 15 14 19 19 H 1.08998 * 109.47002 * 309.99980 * 18 16 15 20 20 C 1.52999 * 109.46992 * 69.99802 * 18 16 15 21 21 C 1.50700 * 109.46981 * 189.99709 * 18 16 15 22 22 H 1.07997 * 120.00145 * 359.97438 * 21 18 16 23 23 C 1.37880 * 119.99400 * 179.97438 * 21 18 16 24 24 N 1.31506 * 120.00463 * 0.02562 * 23 21 18 25 25 Si 1.86807 * 119.99424 * 179.97438 * 23 21 18 26 26 H 1.48497 * 109.47134 * 60.00397 * 25 23 21 27 27 H 1.48510 * 109.46880 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47153 * 299.99827 * 25 23 21 29 29 H 1.08998 * 109.47219 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47075 * 300.00423 * 1 2 3 31 31 H 1.09005 * 109.47095 * 59.99639 * 1 2 3 32 32 H 1.09001 * 109.47250 * 240.00102 * 2 1 3 33 33 H 1.08999 * 109.47378 * 120.00033 * 2 1 3 34 34 H 1.09001 * 109.46769 * 59.99808 * 3 2 1 35 35 H 1.08999 * 109.46816 * 300.00377 * 3 2 1 36 36 H 0.97001 * 120.01036 * 359.97438 * 4 3 2 37 37 H 1.09001 * 109.47245 * 60.00431 * 7 5 4 38 38 H 1.08999 * 109.47630 * 300.00212 * 7 5 4 39 39 H 1.09004 * 115.54620 * 334.41311 * 10 9 8 40 40 H 1.08997 * 117.50288 * 359.97438 * 11 10 9 41 41 H 1.09004 * 117.49796 * 145.02007 * 11 10 9 42 42 H 1.09001 * 117.49641 * 214.98128 * 12 10 9 43 43 H 1.08996 * 117.50233 * 359.97438 * 12 10 9 44 44 H 1.09004 * 109.46715 * 59.99413 * 17 16 15 45 45 H 1.09001 * 109.47232 * 179.97438 * 17 16 15 46 46 H 1.08993 * 109.47068 * 300.00375 * 17 16 15 47 47 H 1.09005 * 109.47459 * 60.00178 * 20 18 16 48 48 H 1.09009 * 109.47089 * 180.02562 * 20 18 16 49 49 H 1.09000 * 109.47491 * 299.99856 * 20 18 16 50 50 H 0.97002 * 120.00194 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1789 2.6096 -0.0012 6 8 3.5726 3.6600 -0.0008 7 6 5.6859 2.6095 -0.0013 8 7 6.1744 3.9908 -0.0027 9 6 6.4491 4.7681 -1.0934 10 6 6.3065 4.3629 -2.5379 11 6 6.8624 5.3165 -3.5973 12 6 5.3495 5.1787 -3.4093 13 7 6.8574 5.9243 -0.6524 14 7 6.8588 5.9303 0.6328 15 6 6.4485 4.7686 1.0845 16 7 6.3176 4.4014 2.4143 17 6 4.9505 3.9476 2.7030 18 6 6.7058 5.5029 3.3053 19 1 7.6780 5.8908 3.0012 20 6 5.6625 6.6188 3.2211 21 6 6.7875 4.9975 4.7227 22 1 6.5722 3.9617 4.9399 23 6 7.1373 5.8575 5.7421 24 7 7.3990 7.1188 5.4776 25 14 7.2379 5.2312 7.4991 26 1 8.2497 4.1474 7.5811 27 1 7.6305 6.3447 8.3998 28 1 5.9129 4.7038 7.9133 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9901 0.6024 -0.0006 37 1 6.0492 2.0953 -0.8911 38 1 6.0494 2.0961 0.8889 39 1 6.3794 3.2934 -2.7354 40 1 7.3309 6.2372 -3.2497 41 1 7.3005 4.8744 -4.4922 42 1 4.7930 4.6459 -4.1804 43 1 4.8226 6.0082 -2.9378 44 1 4.7139 3.0867 2.0776 45 1 4.8756 3.6651 3.7531 46 1 4.2480 4.7538 2.4921 47 1 4.6902 6.2310 3.5253 48 1 5.9508 7.4364 3.8820 49 1 5.6033 6.9844 2.1960 50 1 7.6454 7.7238 6.1948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454869393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:52 Heat of formation + Delta-G solvation = 65.227567 kcal Electronic energy + Delta-G solvation = -30498.714978 eV Core-core repulsion = 26563.215570 eV Total energy + Delta-G solvation = -3935.499409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.03201 -40.89469 -39.23996 -37.90317 -36.95272 -35.89301 -34.76073 -33.65341 -31.21146 -30.39137 -29.86967 -27.37748 -27.23090 -26.56633 -24.89868 -23.53492 -23.19931 -22.61671 -22.25347 -21.06825 -20.79917 -18.65243 -18.57529 -18.11391 -17.33963 -17.10394 -16.97697 -16.74643 -16.64054 -16.17675 -15.81193 -15.46190 -15.44010 -15.02766 -14.81919 -14.44319 -13.94566 -13.84521 -13.50323 -13.45730 -13.16757 -13.07468 -12.96670 -12.93554 -12.70166 -12.56334 -12.46792 -12.35053 -12.17164 -12.03993 -12.02021 -11.95091 -11.85075 -11.74376 -11.53196 -11.26700 -11.05731 -10.80181 -10.53067 -10.43940 -10.21316 -9.01716 -8.12995 -6.29007 0.68754 1.20344 1.37106 1.44648 1.47813 1.55548 1.84892 2.06498 2.41684 2.95150 2.96646 3.16371 3.28031 3.53118 3.59255 3.85542 3.89015 3.92926 3.95677 4.01939 4.08370 4.14725 4.28155 4.35551 4.40690 4.56186 4.65478 4.70819 4.75994 4.78622 4.84424 4.84530 4.86908 4.93507 5.01864 5.03328 5.14733 5.16163 5.25587 5.27148 5.30466 5.41148 5.44451 5.52360 5.58681 5.80532 6.00259 6.14810 6.38430 6.52577 6.79504 7.08806 7.39750 7.86719 8.94060 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008935 B = 0.004109 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.015614 B = 6813.337683 C = 9404.079624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.118 3.882 4 N -0.705 5.705 5 C 0.497 3.503 6 O -0.567 6.567 7 C 0.081 3.919 8 N -0.468 5.468 9 C 0.211 3.789 10 C -0.090 4.090 11 C -0.140 4.140 12 C -0.152 4.152 13 N -0.331 5.331 14 N -0.368 5.368 15 C 0.375 3.625 16 N -0.449 5.449 17 C 0.050 3.950 18 C 0.242 3.758 19 H 0.010 0.990 20 C -0.147 4.147 21 C -0.526 4.526 22 H 0.073 0.927 23 C 0.011 3.989 24 N -0.920 5.920 25 Si 0.973 3.027 26 H -0.267 1.267 27 H -0.287 1.287 28 H -0.265 1.265 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.423 0.577 37 H 0.173 0.827 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.081 0.919 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.013 0.987 47 H 0.028 0.972 48 H 0.066 0.934 49 H 0.017 0.983 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 -21.421 -17.677 29.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.006 4.006 4 N -0.359 5.359 5 C 0.282 3.718 6 O -0.445 6.445 7 C -0.045 4.045 8 N -0.164 5.164 9 C -0.057 4.057 10 C -0.110 4.110 11 C -0.178 4.178 12 C -0.190 4.190 13 N -0.168 5.168 14 N -0.211 5.211 15 C 0.017 3.983 16 N -0.172 5.172 17 C -0.097 4.097 18 C 0.136 3.864 19 H 0.028 0.972 20 C -0.207 4.207 21 C -0.564 4.564 22 H 0.091 0.909 23 C -0.188 4.188 24 N -0.559 5.559 25 Si 0.797 3.203 26 H -0.192 1.192 27 H -0.213 1.213 28 H -0.190 1.190 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.261 0.739 37 H 0.190 0.810 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.099 0.901 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.032 0.968 47 H 0.047 0.953 48 H 0.085 0.915 49 H 0.036 0.964 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.609 -19.479 -17.431 27.849 hybrid contribution -0.576 -0.330 1.298 1.458 sum -10.185 -19.809 -16.133 27.503 Atomic orbital electron populations 1.21707 0.94582 1.02818 1.01972 1.21680 0.96875 0.93495 1.04121 1.21470 0.78663 0.99153 1.01284 1.45736 1.07745 1.08061 1.74395 1.20881 0.90185 0.84487 0.76270 1.90830 1.70525 1.33142 1.50041 1.22155 0.91739 0.80233 1.10375 1.45621 1.52109 1.13866 1.04767 1.24353 1.01783 0.88218 0.91391 1.20386 1.09786 1.00193 0.80683 1.23094 0.95957 1.00007 0.98733 1.23052 0.93452 1.01380 1.01128 1.73759 1.20592 1.19312 1.03181 1.74695 1.26251 1.16793 1.03353 1.23095 0.99475 0.87110 0.88590 1.59234 1.24441 1.37534 0.95945 1.22378 0.85445 0.98607 1.03283 1.18946 0.93217 0.84385 0.89836 0.97209 1.22116 0.98232 1.01998 0.98329 1.21255 1.47771 0.96629 0.90761 0.90937 1.25842 0.94455 0.94808 1.03705 1.70081 1.46729 1.05092 1.34007 0.85388 0.79018 0.77749 0.78112 1.19155 1.21270 1.18996 0.90891 0.93164 0.92542 0.89413 0.90213 0.93437 0.92352 0.73932 0.80985 0.83980 0.82214 0.90075 0.84103 0.84647 0.91664 0.90683 0.89228 0.96810 0.95341 0.91476 0.96435 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -0.91 6.05 30.59 0.19 -0.72 16 3 C 0.12 1.68 5.67 86.38 0.49 2.17 16 4 N -0.71 -9.31 5.56 -463.07 -2.57 -11.89 16 5 C 0.50 11.28 5.84 87.66 0.51 11.79 16 6 O -0.57 -19.73 15.81 -3.03 -0.05 -19.78 16 7 C 0.08 1.67 5.62 85.63 0.48 2.15 16 8 N -0.47 -16.18 2.29 -518.90 -1.19 -17.37 16 9 C 0.21 7.45 7.59 137.64 1.04 8.49 16 10 C -0.09 -2.01 5.99 -11.54 -0.07 -2.08 16 11 C -0.14 -2.78 10.15 30.62 0.31 -2.47 16 12 C -0.15 -3.14 10.24 30.62 0.31 -2.83 16 13 N -0.33 -15.22 11.79 -49.54 -0.58 -15.80 16 14 N -0.37 -19.28 9.63 -58.00 -0.56 -19.84 16 15 C 0.37 17.24 6.76 260.11 1.76 19.00 16 16 N -0.45 -21.06 4.76 -710.99 -3.39 -24.45 16 17 C 0.05 2.04 7.93 127.69 1.01 3.05 16 18 C 0.24 13.57 2.00 44.17 0.09 13.66 16 19 H 0.01 0.65 7.75 -2.39 -0.02 0.63 16 20 C -0.15 -8.42 8.18 71.98 0.59 -7.83 16 21 C -0.53 -29.47 7.91 25.60 0.20 -29.27 16 22 H 0.07 3.83 7.12 -2.91 -0.02 3.81 16 23 C 0.01 0.63 5.30 84.66 0.45 1.08 16 24 N -0.92 -55.67 11.32 21.45 0.24 -55.43 16 25 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.42 2.05 8.47 -92.71 -0.79 1.26 16 37 H 0.17 1.65 7.44 -2.39 -0.02 1.64 16 38 H 0.14 2.59 7.57 -2.39 -0.02 2.57 16 39 H 0.16 2.07 7.54 -2.38 -0.02 2.05 16 40 H 0.08 2.13 7.92 -2.39 -0.02 2.11 16 41 H 0.14 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 2.46 3.86 -2.38 -0.01 2.45 16 45 H 0.09 3.64 6.76 -2.39 -0.02 3.62 16 46 H 0.01 0.62 6.46 -2.39 -0.02 0.60 16 47 H 0.03 1.53 6.42 -2.38 -0.02 1.51 16 48 H 0.07 4.13 6.07 -2.38 -0.01 4.12 16 49 H 0.02 0.99 6.34 -2.39 -0.02 0.98 16 50 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -87.89 396.62 2.18 -85.71 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.17 Total: 17.47 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 8.08 Total: 15.64 kcal Atomic # 7 Polarization: -136.72 SS G_CDS: -8.05 Total: -144.77 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -87.89 2.18 -85.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454869393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.935 kcal (2) G-P(sol) polarization free energy of solvation -87.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds