Wall clock time and date at job start Tue Mar 31 2020 18:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 C 1.50702 * 109.46896 * 240.00455 * 2 1 3 5 5 H 1.08002 * 119.99768 * 240.00274 * 4 2 1 6 6 C 1.37880 * 120.00282 * 59.99837 * 4 2 1 7 7 N 1.31516 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99943 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47031 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.46875 * 119.99916 * 8 6 4 11 11 H 1.48494 * 109.46964 * 240.00080 * 8 6 4 12 12 C 1.52994 * 109.47160 * 120.00170 * 2 1 3 13 13 N 1.46499 * 109.47233 * 299.99584 * 12 2 1 14 14 C 1.34772 * 120.00168 * 180.02562 * 13 12 2 15 15 O 1.21587 * 120.00061 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00628 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00834 * 179.97438 * 16 14 13 18 18 C 1.50691 * 109.47279 * 179.97438 * 17 16 14 19 19 N 1.30692 * 126.43369 * 269.99551 * 18 17 16 20 20 N 1.28744 * 109.70263 * 179.62016 * 19 18 17 21 21 C 1.30109 * 109.59183 * 359.69321 * 20 19 18 22 22 N 1.35137 * 126.42926 * 90.00397 * 18 17 16 23 23 C 1.46311 * 127.25305 * 1.29455 * 22 18 17 24 24 C 1.53121 * 109.39331 * 207.60536 * 23 22 18 25 25 C 1.52800 * 109.69304 * 270.76052 * 24 23 22 26 26 C 1.52563 * 110.51474 * 61.41320 * 25 24 23 27 27 C 1.50670 * 127.32470 * 180.95030 * 21 20 19 28 28 H 1.09008 * 109.46806 * 299.99800 * 1 2 3 29 29 H 1.08997 * 109.47362 * 59.99851 * 1 2 3 30 30 H 1.09000 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47286 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46959 * 300.00541 * 3 2 1 33 33 H 1.08998 * 109.46849 * 59.99823 * 3 2 1 34 34 H 0.96997 * 119.99748 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46696 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47473 * 60.00026 * 12 2 1 37 37 H 0.96996 * 120.00105 * 0.02562 * 13 12 2 38 38 H 0.97010 * 119.99321 * 359.97438 * 16 14 13 39 39 H 1.09002 * 109.46655 * 59.99190 * 17 16 14 40 40 H 1.08996 * 109.47147 * 300.00254 * 17 16 14 41 41 H 1.09002 * 109.48459 * 87.62634 * 23 22 18 42 42 H 1.09006 * 109.49415 * 327.59031 * 23 22 18 43 43 H 1.09000 * 109.43262 * 150.68375 * 24 23 22 44 44 H 1.09004 * 109.39267 * 30.79963 * 24 23 22 45 45 H 1.08999 * 109.26481 * 301.14144 * 25 24 23 46 46 H 1.09007 * 109.26461 * 181.68304 * 25 24 23 47 47 H 1.08999 * 109.45297 * 273.39890 * 26 25 24 48 48 H 1.09003 * 109.45599 * 153.45120 * 26 25 24 49 49 H 1.09002 * 109.53337 * 107.00566 * 27 21 20 50 50 H 1.09002 * 109.53319 * 346.85431 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1463 -2.2868 -3.6040 10 1 1.1659 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8778 -0.4908 3.6694 15 8 2.5768 -1.4794 3.7810 16 7 1.4283 0.1442 4.7699 17 6 1.7822 -0.3563 6.1005 18 6 1.1586 0.5257 7.1512 19 7 1.6960 1.5870 7.6924 20 7 0.8799 2.0993 8.5463 21 6 -0.2128 1.3940 8.5829 22 7 -0.0613 0.3677 7.7108 23 6 -1.0270 -0.6984 7.4433 24 6 -2.4433 -0.1791 7.7061 25 6 -2.8163 -0.4181 9.1685 26 6 -1.8665 0.3376 10.0929 27 6 -1.4358 1.6473 9.4257 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7080 1.1610 -3.4844 35 1 3.1300 -0.7208 1.2493 36 1 1.6767 -1.7489 1.2492 37 1 0.9939 0.7578 2.3564 38 1 0.8703 0.9327 4.6809 39 1 2.8661 -0.3474 6.2155 40 1 1.4131 -1.3755 6.2153 41 1 -0.8233 -1.5461 8.0976 42 1 -0.9424 -1.0133 6.4032 43 1 -3.1477 -0.7047 7.0615 44 1 -2.4828 0.8889 7.4917 45 1 -2.7565 -1.4846 9.3852 46 1 -3.8360 -0.0733 9.3406 47 1 -0.9874 -0.2758 10.2902 48 1 -2.3733 0.5583 11.0324 49 1 -2.2434 2.0174 8.7941 50 1 -1.2037 2.3873 10.1916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477503677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:18 Heat of formation + Delta-G solvation = 38.044431 kcal Electronic energy + Delta-G solvation = -29278.563823 eV Core-core repulsion = 25341.885665 eV Total energy + Delta-G solvation = -3936.678158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.64014 -39.65565 -38.28434 -36.62246 -35.29918 -34.13489 -33.28686 -32.16143 -31.04991 -30.28328 -27.47452 -26.47974 -25.73015 -25.48796 -25.14016 -24.43690 -21.59013 -20.94917 -20.73540 -20.57365 -18.80596 -18.41688 -17.15320 -17.04798 -15.96613 -15.85014 -15.77437 -15.58899 -15.34223 -14.76479 -14.70973 -14.33214 -13.92483 -13.65968 -13.53684 -13.42203 -13.35636 -12.87319 -12.69733 -12.51723 -12.36362 -12.18816 -11.87737 -11.57290 -11.47234 -11.39358 -11.21231 -11.20673 -10.88526 -10.66201 -10.53103 -10.42899 -10.39363 -10.22382 -9.95574 -9.63959 -9.40564 -9.28550 -9.15663 -8.78769 -8.43164 -8.24720 -6.02661 -4.12490 1.35551 2.07323 2.48386 3.15756 3.27036 3.35801 3.40844 3.54034 3.75007 3.89225 3.95375 4.00717 4.19205 4.38269 4.45901 4.53069 4.54953 4.66610 4.72210 4.90264 5.01714 5.09201 5.17181 5.24214 5.24323 5.37969 5.41096 5.51156 5.57650 5.63026 5.66671 5.84963 6.18016 6.35135 6.38033 6.49837 6.51002 6.77378 6.82178 6.88157 7.02321 7.05592 7.22150 7.38004 7.55376 7.69673 8.00633 8.11804 8.35327 8.40964 8.46149 8.87037 8.95048 9.53379 10.98836 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.002149 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.743400 B =13028.079525 C =13371.031125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.504 4.504 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.730 5.730 14 C 0.702 3.298 15 O -0.596 6.596 16 N -0.751 5.751 17 C 0.233 3.767 18 C 0.158 3.842 19 N -0.273 5.273 20 N -0.293 5.293 21 C 0.183 3.817 22 N -0.460 5.460 23 C 0.100 3.900 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.037 4.037 28 H 0.005 0.995 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.006 0.994 34 H 0.259 0.741 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.394 0.606 38 H 0.396 0.604 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.262 -0.616 24.049 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.384 5.384 14 C 0.402 3.598 15 O -0.475 6.475 16 N -0.410 5.410 17 C 0.106 3.894 18 C -0.109 4.109 19 N -0.114 5.114 20 N -0.133 5.133 21 C -0.084 4.084 22 N -0.151 5.151 23 C -0.023 4.023 24 C -0.178 4.178 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.076 4.076 28 H 0.024 0.976 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.229 0.771 38 H 0.229 0.771 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.672 -0.390 24.263 26.122 hybrid contribution -1.094 -0.707 -1.219 1.784 sum -10.766 -1.098 23.044 25.458 Atomic orbital electron populations 1.21821 0.97840 0.99097 0.99977 1.18372 0.92753 0.92821 0.90567 1.21827 0.98683 0.98315 1.00017 1.21020 1.31350 1.12067 0.89810 0.92319 1.24888 0.94888 0.94935 0.98882 1.69816 1.36752 1.22820 1.23107 0.86511 0.78620 0.79769 0.82972 1.19730 1.21101 1.21069 1.21619 0.98034 0.95367 0.82244 1.45507 1.55444 1.32990 1.04458 1.15950 0.80461 0.82932 0.80485 1.90903 1.42878 1.27717 1.85990 1.45052 1.58102 1.33778 1.04063 1.19160 1.00343 0.93251 0.76606 1.24679 0.85228 0.99468 1.01569 1.74441 1.23589 1.06412 1.06966 1.74213 0.99464 1.23844 1.15777 1.24715 0.99449 0.88224 0.96025 1.46160 1.15071 1.22452 1.31442 1.22123 0.87778 0.88460 1.03928 1.22028 0.94408 1.03277 0.98103 1.21618 0.99954 1.01110 0.93567 1.21622 0.99901 0.95502 0.99189 1.20231 0.90681 0.99239 0.97489 0.97645 0.89633 0.95462 0.95358 0.89649 0.97548 0.93080 0.92784 0.92858 0.77129 0.77092 0.88082 0.89923 0.88976 0.88098 0.89051 0.89979 0.91105 0.90750 0.91602 0.90040 0.88805 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.50 -13.10 8.01 -34.44 -0.28 -13.37 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.51 9.35 55.43 0.52 -22.99 16 8 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.15 3.17 4.50 -4.05 -0.02 3.15 16 13 N -0.73 -12.85 4.96 -65.23 -0.32 -13.17 16 14 C 0.70 12.05 8.57 -86.92 -0.74 11.31 16 15 O -0.60 -12.40 16.34 5.29 0.09 -12.31 16 16 N -0.75 -9.76 5.55 -66.42 -0.37 -10.13 16 17 C 0.23 2.73 5.89 -5.20 -0.03 2.70 16 18 C 0.16 1.84 7.41 -155.17 -1.15 0.69 16 19 N -0.27 -3.98 12.22 32.75 0.40 -3.58 16 20 N -0.29 -4.01 12.21 32.73 0.40 -3.61 16 21 C 0.18 1.81 6.94 -155.31 -1.08 0.73 16 22 N -0.46 -4.17 3.06 -110.89 -0.34 -4.51 16 23 C 0.10 0.57 6.11 -4.08 -0.02 0.55 16 24 C -0.14 -0.56 5.55 -26.77 -0.15 -0.71 16 25 C -0.13 -0.38 5.67 -27.06 -0.15 -0.53 16 26 C -0.12 -0.50 5.68 -26.87 -0.15 -0.65 16 27 C -0.04 -0.21 5.54 -27.81 -0.15 -0.37 16 28 H 0.00 0.09 6.86 -51.92 -0.36 -0.27 16 29 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 33 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 34 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.39 6.30 6.18 -40.82 -0.25 6.05 16 38 H 0.40 4.56 8.48 -40.82 -0.35 4.21 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 41 H 0.09 0.43 7.82 -51.93 -0.41 0.02 16 42 H 0.10 0.59 7.92 -51.93 -0.41 0.18 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.40 5.69 -51.93 -0.30 0.10 16 45 H 0.07 0.19 8.09 -51.93 -0.42 -0.23 16 46 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 47 H 0.07 0.35 7.84 -51.93 -0.41 -0.05 16 48 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.09 0.43 6.33 -51.93 -0.33 0.10 16 50 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -32.07 387.69 -10.27 -42.34 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.97 Total: 5.40 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -3.50 Total: 1.09 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.29 Total: -57.99 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.07 -10.27 -42.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477503677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.384 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds