Wall clock time and date at job start Tue Mar 31 2020 18:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47320 * 2 1 4 4 C 1.53001 * 109.47116 * 239.99879 * 2 1 3 5 5 N 1.46504 * 109.46955 * 120.00256 * 2 1 3 6 6 C 1.34583 * 125.74548 * 75.00330 * 5 2 1 7 7 N 1.30874 * 107.62203 * 179.72934 * 6 5 2 8 8 C 1.34552 * 107.27042 * 0.38796 * 7 6 5 9 9 C 1.47860 * 126.05237 * 179.87371 * 8 7 6 10 10 O 1.21559 * 120.00364 * 179.68551 * 9 8 7 11 11 N 1.34774 * 120.00009 * 359.68378 * 9 8 7 12 12 C 1.46496 * 120.00394 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47420 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47523 * 179.97438 * 13 12 11 15 15 N 1.46494 * 109.47302 * 179.97438 * 14 13 12 16 16 C 1.36929 * 120.00152 * 270.27322 * 15 14 13 17 17 H 1.08004 * 120.00412 * 140.37320 * 16 15 14 18 18 C 1.38809 * 120.00289 * 320.37908 * 16 15 14 19 19 N 1.31615 * 119.99954 * 340.41261 * 18 16 15 20 20 Si 1.86805 * 120.00171 * 160.41487 * 18 16 15 21 21 H 1.48500 * 109.47171 * 90.00026 * 20 18 16 22 22 H 1.48502 * 109.46800 * 209.99781 * 20 18 16 23 23 H 1.48497 * 109.47160 * 329.99729 * 20 18 16 24 24 C 1.46507 * 119.99953 * 90.00397 * 15 14 13 25 25 C 1.52991 * 117.49937 * 183.28820 * 24 15 14 26 26 C 1.52992 * 117.49968 * 114.66326 * 24 15 14 27 27 N 1.28845 * 125.74579 * 254.97414 * 5 2 1 28 28 H 1.08997 * 109.46730 * 300.00006 * 1 2 3 29 29 H 1.08998 * 109.46980 * 59.99772 * 1 2 3 30 30 H 1.09001 * 109.47342 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47481 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47281 * 300.00044 * 3 2 1 33 33 H 1.08999 * 109.46713 * 60.00244 * 3 2 1 34 34 H 1.09001 * 109.47573 * 300.00541 * 4 2 1 35 35 H 1.09005 * 109.46579 * 60.00133 * 4 2 1 36 36 H 1.08998 * 109.47407 * 179.97438 * 4 2 1 37 37 H 1.07994 * 126.19209 * 359.94999 * 6 5 2 38 38 H 0.97008 * 120.00060 * 0.02562 * 11 9 8 39 39 H 1.09000 * 109.47356 * 59.99933 * 12 11 9 40 40 H 1.08998 * 109.47251 * 300.00018 * 12 11 9 41 41 H 1.09007 * 109.47191 * 59.99940 * 13 12 11 42 42 H 1.08994 * 109.47388 * 300.00299 * 13 12 11 43 43 H 1.09007 * 109.46756 * 59.99894 * 14 13 12 44 44 H 1.09003 * 109.47037 * 300.00793 * 14 13 12 45 45 H 0.97006 * 120.00540 * 175.01917 * 19 18 16 46 46 H 1.08995 * 115.54374 * 328.99474 * 24 15 14 47 47 H 1.09008 * 117.49974 * 0.02562 * 25 24 15 48 48 H 1.09001 * 117.50271 * 145.01691 * 25 24 15 49 49 H 1.09004 * 117.50234 * 214.98101 * 26 24 15 50 50 H 1.09002 * 117.50434 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0139 -2.0222 1.3921 7 7 2.5331 -2.2508 2.5715 8 6 2.8501 -1.0577 3.1065 9 6 3.4618 -0.8341 4.4340 10 8 3.7082 0.2962 4.8072 11 7 3.7462 -1.8836 5.2303 12 6 4.3517 -1.6622 6.5457 13 6 4.5703 -3.0082 7.2397 14 6 5.2034 -2.7770 8.6133 15 7 5.4121 -4.0657 9.2780 16 6 4.4279 -4.5954 10.0690 17 1 4.2280 -5.6565 10.0446 18 6 3.6868 -3.7687 10.9022 19 7 4.1501 -2.5820 11.2330 20 14 2.0321 -4.3404 11.5539 21 1 2.2266 -5.0503 12.8437 22 1 1.1500 -3.1644 11.7643 23 1 1.4045 -5.2607 10.5720 24 6 6.6715 -4.7906 9.0916 25 6 6.7990 -6.1660 9.7494 26 6 7.5699 -4.9723 10.3165 27 7 2.5248 -0.1257 2.2375 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.6511 -2.7674 0.6998 38 1 3.5499 -2.7857 4.9324 39 1 3.6890 -1.0442 7.1514 40 1 5.3097 -1.1567 6.4243 41 1 5.2333 -3.6260 6.6338 42 1 3.6126 -3.5142 7.3611 43 1 4.5407 -2.1591 9.2194 44 1 6.1612 -2.2712 8.4914 45 1 3.6019 -1.9756 11.7554 46 1 7.1585 -4.6464 8.1272 47 1 5.9457 -6.5318 10.3205 48 1 7.3699 -6.9272 9.2177 49 1 8.6481 -4.9482 10.1580 50 1 7.2243 -4.5522 11.2611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479875677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:55 Heat of formation + Delta-G solvation = 95.242320 kcal Electronic energy + Delta-G solvation = -28437.461986 eV Core-core repulsion = 24503.264115 eV Total energy + Delta-G solvation = -3934.197872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.68858 -39.29118 -37.68923 -37.05632 -35.22303 -33.54273 -32.82440 -31.62785 -31.08410 -29.35116 -28.15603 -28.02330 -25.88622 -24.43467 -23.28400 -22.93855 -21.37163 -20.91199 -20.46331 -20.29070 -19.57873 -17.91397 -16.79942 -16.69382 -16.38947 -15.82997 -15.44965 -15.17432 -14.81172 -14.72229 -14.59956 -14.45326 -13.91972 -13.69001 -13.40077 -13.31056 -13.03370 -12.90953 -12.58442 -12.43237 -12.30302 -12.14180 -11.93843 -11.85679 -11.56385 -11.46014 -10.97130 -10.76304 -10.69529 -10.62455 -10.59499 -10.54895 -10.22377 -10.14133 -9.91093 -9.70553 -9.58032 -9.51354 -9.20696 -8.78503 -8.43926 -6.48808 -5.74776 -3.41913 1.31726 1.85600 1.98230 3.15609 3.36519 3.44743 3.45722 3.47184 3.77333 4.00358 4.03782 4.14077 4.45437 4.47379 4.70202 4.78446 4.91821 4.97072 4.99594 5.04852 5.10446 5.19152 5.22982 5.31482 5.36848 5.49573 5.68136 5.71609 5.78647 5.88205 5.97369 6.07732 6.15328 6.18248 6.31595 6.33477 6.42626 6.45087 6.55079 6.70669 6.75081 6.81172 7.09754 7.16616 7.29284 7.59530 7.67662 7.82875 7.94723 8.33706 8.53438 9.19026 9.80062 10.38904 11.19847 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.002106 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.937277 B =13293.238336 C =13873.758459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.294 5.294 6 C 0.187 3.813 7 N -0.483 5.483 8 C 0.143 3.857 9 C 0.609 3.391 10 O -0.524 6.524 11 N -0.703 5.703 12 C 0.122 3.878 13 C -0.146 4.146 14 C 0.155 3.845 15 N -0.551 5.551 16 C -0.260 4.260 17 H 0.063 0.937 18 C 0.015 3.985 19 N -0.882 5.882 20 Si 0.894 3.106 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.121 3.879 25 C -0.196 4.196 26 C -0.222 4.222 27 N -0.248 5.248 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.221 0.779 38 H 0.409 0.591 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.029 0.971 45 H 0.255 0.745 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.742 3.255 -27.100 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.091 5.091 6 C -0.108 4.108 7 N -0.208 5.208 8 C -0.137 4.137 9 C 0.390 3.610 10 O -0.397 6.397 11 N -0.355 5.355 12 C -0.001 4.001 13 C -0.186 4.186 14 C 0.028 3.972 15 N -0.267 5.267 16 C -0.389 4.389 17 H 0.080 0.920 18 C -0.186 4.186 19 N -0.523 5.523 20 Si 0.723 3.277 21 H -0.212 1.212 22 H -0.214 1.214 23 H -0.202 1.202 24 C 0.012 3.988 25 C -0.234 4.234 26 C -0.263 4.263 27 N -0.087 5.087 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.237 0.763 38 H 0.244 0.756 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.103 0.897 47 H 0.115 0.885 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.453 4.590 -26.341 27.288 hybrid contribution -1.140 -0.951 -0.064 1.486 sum -6.593 3.639 -26.405 27.458 Atomic orbital electron populations 1.22270 0.91713 1.03674 1.04180 1.21163 0.95333 0.94373 0.80659 1.22000 1.02626 0.92230 1.03815 1.22263 1.02734 1.01165 0.95652 1.47789 1.41572 1.06271 1.13484 1.26303 1.01727 0.86438 0.96351 1.71299 1.16405 1.26003 1.07086 1.23884 1.06144 0.85559 0.98141 1.16326 0.78415 0.85203 0.81022 1.90825 1.52941 1.22555 1.73391 1.45882 1.62196 1.09269 1.18102 1.21552 0.97877 0.99571 0.81084 1.22472 1.02436 0.94180 0.99544 1.20761 0.98385 0.88583 0.89481 1.43320 1.10828 1.20521 1.52078 1.18985 1.10364 0.93574 1.16012 0.91988 1.25244 1.00048 0.97539 0.95765 1.70051 1.35118 1.09036 1.38124 0.86461 0.84320 0.77953 0.78973 1.21239 1.21434 1.20245 1.21227 0.89636 0.94924 0.93011 1.23009 1.03067 0.91513 1.05858 1.23344 0.96067 1.04317 1.02550 1.74299 1.13514 1.25446 0.95415 0.91173 0.89575 0.91304 0.91232 0.90310 0.90464 0.91090 0.89315 0.91112 0.76282 0.75581 0.91099 0.91562 0.92946 0.91357 0.88666 0.95203 0.93498 0.89669 0.88521 0.90903 0.91349 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 8.72 37.16 0.32 -0.34 16 2 C 0.17 0.95 1.23 -131.82 -0.16 0.78 16 3 C -0.15 -0.92 8.04 37.16 0.30 -0.62 16 4 C -0.16 -0.48 8.28 37.16 0.31 -0.17 16 5 N -0.29 -2.85 3.17 -49.84 -0.16 -3.01 16 6 C 0.19 1.72 11.71 -90.48 -1.06 0.66 16 7 N -0.48 -6.31 11.09 -12.37 -0.14 -6.45 16 8 C 0.14 2.20 7.96 -156.35 -1.24 0.95 16 9 C 0.61 10.68 7.83 -12.32 -0.10 10.59 16 10 O -0.52 -10.80 17.09 5.31 0.09 -10.71 16 11 N -0.70 -11.30 5.55 -61.25 -0.34 -11.64 16 12 C 0.12 2.12 5.67 -4.04 -0.02 2.10 16 13 C -0.15 -2.73 5.65 -26.73 -0.15 -2.88 16 14 C 0.15 3.49 5.33 -4.04 -0.02 3.47 16 15 N -0.55 -13.40 2.75 -165.67 -0.45 -13.86 16 16 C -0.26 -6.89 8.47 -15.06 -0.13 -7.02 16 17 H 0.06 1.66 6.75 -52.48 -0.35 1.30 16 18 C 0.02 0.41 4.98 -17.43 -0.09 0.32 16 19 N -0.88 -25.05 11.50 55.49 0.64 -24.41 16 20 Si 0.89 21.39 29.60 -169.99 -5.03 16.36 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.12 2.60 6.56 -67.94 -0.45 2.16 16 25 C -0.20 -3.93 9.80 -26.74 -0.26 -4.19 16 26 C -0.22 -4.62 10.36 -26.74 -0.28 -4.90 16 27 N -0.25 -3.50 11.09 32.07 0.36 -3.14 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.62 8.02 -51.93 -0.42 0.21 16 34 H 0.07 0.13 7.34 -51.93 -0.38 -0.26 16 35 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.22 0.93 7.53 -52.49 -0.40 0.53 16 38 H 0.41 5.95 8.18 -40.82 -0.33 5.61 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.10 2.44 5.59 -51.93 -0.29 2.15 16 44 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 45 H 0.25 7.03 8.32 -40.82 -0.34 6.69 16 46 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 47 H 0.10 2.10 6.47 -51.92 -0.34 1.77 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 50 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 412.17 15.07 6.21 6.21 Total: -1.00 -33.66 412.17 -10.26 -43.91 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.40 Total: 5.83 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.03 Total: 0.90 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.10 Total: -62.51 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.66 -10.26 -43.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479875677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.153 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds