Wall clock time and date at job start Tue Mar 31 2020 18:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47320 * 2 1 4 4 C 1.53001 * 109.47116 * 239.99879 * 2 1 3 5 5 N 1.46504 * 109.46955 * 120.00256 * 2 1 3 6 6 C 1.34583 * 125.74548 * 75.00330 * 5 2 1 7 7 N 1.30874 * 107.62203 * 179.72934 * 6 5 2 8 8 C 1.34552 * 107.27042 * 0.38796 * 7 6 5 9 9 C 1.47860 * 126.05237 * 179.87371 * 8 7 6 10 10 O 1.21559 * 120.00364 * 179.68551 * 9 8 7 11 11 N 1.34774 * 120.00009 * 359.68378 * 9 8 7 12 12 C 1.46496 * 120.00394 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47420 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47523 * 179.97438 * 13 12 11 15 15 N 1.46494 * 109.47302 * 179.97438 * 14 13 12 16 16 C 1.36929 * 120.00152 * 270.27322 * 15 14 13 17 17 H 1.08004 * 120.00412 * 140.37320 * 16 15 14 18 18 C 1.38809 * 120.00289 * 320.37908 * 16 15 14 19 19 N 1.31615 * 119.99954 * 340.41261 * 18 16 15 20 20 Si 1.86805 * 120.00171 * 160.41487 * 18 16 15 21 21 H 1.48500 * 109.47171 * 90.00026 * 20 18 16 22 22 H 1.48502 * 109.46800 * 209.99781 * 20 18 16 23 23 H 1.48497 * 109.47160 * 329.99729 * 20 18 16 24 24 C 1.46507 * 119.99953 * 90.00397 * 15 14 13 25 25 C 1.52991 * 117.49937 * 183.28820 * 24 15 14 26 26 C 1.52992 * 117.49968 * 114.66326 * 24 15 14 27 27 N 1.28845 * 125.74579 * 254.97414 * 5 2 1 28 28 H 1.08997 * 109.46730 * 300.00006 * 1 2 3 29 29 H 1.08998 * 109.46980 * 59.99772 * 1 2 3 30 30 H 1.09001 * 109.47342 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47481 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47281 * 300.00044 * 3 2 1 33 33 H 1.08999 * 109.46713 * 60.00244 * 3 2 1 34 34 H 1.09001 * 109.47573 * 300.00541 * 4 2 1 35 35 H 1.09005 * 109.46579 * 60.00133 * 4 2 1 36 36 H 1.08998 * 109.47407 * 179.97438 * 4 2 1 37 37 H 1.07994 * 126.19209 * 359.94999 * 6 5 2 38 38 H 0.97008 * 120.00060 * 0.02562 * 11 9 8 39 39 H 1.09000 * 109.47356 * 59.99933 * 12 11 9 40 40 H 1.08998 * 109.47251 * 300.00018 * 12 11 9 41 41 H 1.09007 * 109.47191 * 59.99940 * 13 12 11 42 42 H 1.08994 * 109.47388 * 300.00299 * 13 12 11 43 43 H 1.09007 * 109.46756 * 59.99894 * 14 13 12 44 44 H 1.09003 * 109.47037 * 300.00793 * 14 13 12 45 45 H 0.97006 * 120.00540 * 175.01917 * 19 18 16 46 46 H 1.08995 * 115.54374 * 328.99474 * 24 15 14 47 47 H 1.09008 * 117.49974 * 0.02562 * 25 24 15 48 48 H 1.09001 * 117.50271 * 145.01691 * 25 24 15 49 49 H 1.09004 * 117.50234 * 214.98101 * 26 24 15 50 50 H 1.09002 * 117.50434 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0139 -2.0222 1.3921 7 7 2.5331 -2.2508 2.5715 8 6 2.8501 -1.0577 3.1065 9 6 3.4618 -0.8341 4.4340 10 8 3.7082 0.2962 4.8072 11 7 3.7462 -1.8836 5.2303 12 6 4.3517 -1.6622 6.5457 13 6 4.5703 -3.0082 7.2397 14 6 5.2034 -2.7770 8.6133 15 7 5.4121 -4.0657 9.2780 16 6 4.4279 -4.5954 10.0690 17 1 4.2280 -5.6565 10.0446 18 6 3.6868 -3.7687 10.9022 19 7 4.1501 -2.5820 11.2330 20 14 2.0321 -4.3404 11.5539 21 1 2.2266 -5.0503 12.8437 22 1 1.1500 -3.1644 11.7643 23 1 1.4045 -5.2607 10.5720 24 6 6.6715 -4.7906 9.0916 25 6 6.7990 -6.1660 9.7494 26 6 7.5699 -4.9723 10.3165 27 7 2.5248 -0.1257 2.2375 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.6511 -2.7674 0.6998 38 1 3.5499 -2.7857 4.9324 39 1 3.6890 -1.0442 7.1514 40 1 5.3097 -1.1567 6.4243 41 1 5.2333 -3.6260 6.6338 42 1 3.6126 -3.5142 7.3611 43 1 4.5407 -2.1591 9.2194 44 1 6.1612 -2.2712 8.4914 45 1 3.6019 -1.9756 11.7554 46 1 7.1585 -4.6464 8.1272 47 1 5.9457 -6.5318 10.3205 48 1 7.3699 -6.9272 9.2177 49 1 8.6481 -4.9482 10.1580 50 1 7.2243 -4.5522 11.2611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479875677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:54 Heat of formation + Delta-G solvation = 74.890183 kcal Electronic energy + Delta-G solvation = -28438.344521 eV Core-core repulsion = 24503.264115 eV Total energy + Delta-G solvation = -3935.080406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.55917 -40.65507 -38.82697 -38.23208 -36.73833 -35.27202 -33.80847 -33.25968 -32.12610 -31.01844 -28.49874 -28.40411 -27.48128 -25.99916 -24.44603 -24.01905 -23.01195 -22.48627 -21.68008 -21.30850 -21.10746 -18.90792 -18.25081 -17.67375 -17.49255 -17.31433 -17.04057 -16.54684 -16.42221 -15.77296 -15.71696 -15.19163 -15.16575 -14.94837 -14.77129 -14.37296 -13.92224 -13.80275 -13.63703 -13.32167 -13.24395 -13.21825 -13.03763 -12.78049 -12.77223 -12.57520 -12.46205 -12.39324 -12.29631 -12.03676 -12.00551 -11.87315 -11.52306 -11.47717 -11.44103 -11.36437 -11.25631 -10.86407 -10.63626 -10.46442 -10.16582 -8.47055 -7.76369 -5.48608 0.28670 1.08302 1.14603 1.44001 1.47453 1.56014 1.99020 2.22167 2.50152 3.06072 3.18361 3.27166 3.43643 3.53129 3.65659 3.75387 3.78260 3.87094 4.17671 4.25488 4.35359 4.48694 4.54509 4.57078 4.58050 4.60219 4.62233 4.68511 4.77117 4.77724 4.80136 4.88213 4.92196 4.97550 5.09368 5.10074 5.11841 5.16288 5.21756 5.31285 5.36647 5.39314 5.48661 5.58570 5.67769 5.70179 5.84289 6.32944 6.49262 6.91663 7.08499 7.18525 7.86955 8.39264 9.12774 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.002106 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.937277 B =13293.238336 C =13873.758459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 C -0.149 4.149 4 C -0.155 4.155 5 N -0.286 5.286 6 C 0.202 3.798 7 N -0.504 5.504 8 C 0.114 3.886 9 C 0.608 3.392 10 O -0.566 6.566 11 N -0.692 5.692 12 C 0.134 3.866 13 C -0.122 4.122 14 C 0.155 3.845 15 N -0.568 5.568 16 C -0.257 4.257 17 H 0.059 0.941 18 C -0.035 4.035 19 N -0.914 5.914 20 Si 0.950 3.050 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.268 1.268 24 C 0.102 3.898 25 C -0.180 4.180 26 C -0.222 4.222 27 N -0.272 5.272 28 H 0.044 0.956 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.273 0.727 38 H 0.418 0.582 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.033 0.967 45 H 0.250 0.750 46 H 0.114 0.886 47 H 0.074 0.926 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 1.276 -30.745 31.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 C -0.207 4.207 4 C -0.213 4.213 5 N -0.083 5.083 6 C -0.092 4.092 7 N -0.230 5.230 8 C -0.165 4.165 9 C 0.391 3.609 10 O -0.443 6.443 11 N -0.344 5.344 12 C 0.010 3.990 13 C -0.162 4.162 14 C 0.028 3.972 15 N -0.285 5.285 16 C -0.388 4.388 17 H 0.077 0.923 18 C -0.232 4.232 19 N -0.558 5.558 20 Si 0.778 3.222 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.193 1.193 24 C -0.006 4.006 25 C -0.218 4.218 26 C -0.262 4.262 27 N -0.112 5.112 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.076 0.924 37 H 0.288 0.712 38 H 0.255 0.745 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.132 0.868 47 H 0.092 0.908 48 H 0.130 0.870 49 H 0.118 0.882 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.044 2.567 -30.020 30.730 hybrid contribution -0.939 -0.329 0.937 1.367 sum -6.983 2.238 -29.083 29.993 Atomic orbital electron populations 1.22294 0.90131 1.04669 1.04341 1.21688 0.96473 0.94027 0.80214 1.22021 1.01495 0.93114 1.04058 1.22307 1.01966 1.02355 0.94683 1.48224 1.40055 1.06839 1.13174 1.27236 0.99419 0.86940 0.95616 1.71232 1.17645 1.25278 1.08842 1.23396 1.08344 0.86937 0.97801 1.16638 0.77773 0.84612 0.81917 1.90786 1.54814 1.24041 1.74621 1.45691 1.61711 1.09621 1.17335 1.21286 0.97681 0.98537 0.81492 1.22117 1.01665 0.94720 0.97692 1.20651 0.98060 0.87777 0.90663 1.43520 1.11798 1.20950 1.52254 1.19154 1.10794 0.93432 1.15398 0.92331 1.25890 1.02940 0.97820 0.96583 1.70179 1.36008 1.10089 1.39478 0.85568 0.80931 0.77281 0.78397 1.21259 1.21989 1.19310 1.21563 0.88885 0.95788 0.94390 1.23016 1.02278 0.91623 1.04873 1.23257 0.97805 1.04821 1.00358 1.74221 1.14091 1.26356 0.96577 0.93687 0.86736 0.89887 0.92982 0.87087 0.93183 0.89015 0.86722 0.92366 0.71183 0.74479 0.92975 0.91287 0.91017 0.92648 0.92068 0.94831 0.94106 0.86849 0.90772 0.87034 0.88152 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.72 71.98 0.63 -0.22 16 2 C 0.16 1.41 1.23 3.60 0.00 1.41 16 3 C -0.15 -1.71 8.04 71.98 0.58 -1.13 16 4 C -0.16 -0.33 8.28 71.98 0.60 0.26 16 5 N -0.29 -5.12 3.17 -311.58 -0.99 -6.11 16 6 C 0.20 3.17 11.71 180.30 2.11 5.28 16 7 N -0.50 -12.58 11.09 -193.04 -2.14 -14.72 16 8 C 0.11 3.55 7.96 137.12 1.09 4.64 16 9 C 0.61 22.07 7.83 86.79 0.68 22.75 16 10 O -0.57 -24.57 17.09 -3.90 -0.07 -24.64 16 11 N -0.69 -22.60 5.55 -465.96 -2.59 -25.19 16 12 C 0.13 4.76 5.67 86.38 0.49 5.25 16 13 C -0.12 -4.55 5.65 30.60 0.17 -4.38 16 14 C 0.15 7.12 5.33 86.38 0.46 7.58 16 15 N -0.57 -27.72 2.75 -678.06 -1.86 -29.58 16 16 C -0.26 -13.82 8.47 84.03 0.71 -13.11 16 17 H 0.06 3.15 6.75 -2.91 -0.02 3.13 16 18 C -0.03 -1.92 4.98 84.86 0.42 -1.50 16 19 N -0.91 -53.83 11.50 21.65 0.25 -53.59 16 20 Si 0.95 44.91 29.60 68.60 2.03 46.94 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.10 4.22 6.56 44.98 0.30 4.52 16 25 C -0.18 -6.83 9.80 30.59 0.30 -6.53 16 26 C -0.22 -8.98 10.36 30.59 0.32 -8.67 16 27 N -0.27 -7.76 11.09 -52.44 -0.58 -8.34 16 28 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.84 8.02 -2.39 -0.02 0.82 16 34 H 0.09 -0.15 7.34 -2.39 -0.02 -0.17 16 35 H 0.11 -0.29 8.14 -2.38 -0.02 -0.31 16 36 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.27 0.93 7.53 -2.91 -0.02 0.90 16 38 H 0.42 12.05 8.18 -92.70 -0.76 11.30 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 42 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.06 3.28 5.59 -2.38 -0.01 3.27 16 44 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 45 H 0.25 14.35 8.32 -92.70 -0.77 13.58 16 46 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 47 H 0.07 3.17 6.47 -2.38 -0.02 3.15 16 48 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 49 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 50 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -77.96 412.17 3.09 -74.87 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.17 Total: 24.19 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 8.86 Total: 16.17 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -7.91 Total: -137.53 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.07 Total: -24.64 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -77.96 3.09 -74.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479875677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.763 kcal (2) G-P(sol) polarization free energy of solvation -77.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds