Wall clock time and date at job start Tue Mar 31 2020 19:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47189 * 2 1 4 4 N 1.46497 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99635 * 89.99930 * 4 3 2 6 6 O 1.21285 * 120.00118 * 180.02562 * 5 4 3 7 7 C 1.50706 * 120.00213 * 359.97438 * 5 4 3 8 8 C 1.52998 * 109.47164 * 179.97438 * 7 5 4 9 9 N 1.46495 * 109.47302 * 180.02562 * 8 7 5 10 10 C 1.35310 * 125.87379 * 125.00218 * 9 8 7 11 11 C 1.35347 * 106.17968 * 179.97438 * 10 9 8 12 12 N 1.33775 * 106.49638 * 359.97438 * 11 10 9 13 13 N 1.28630 * 108.88462 * 0.02562 * 12 11 10 14 14 C 1.46493 * 120.00278 * 269.99575 * 4 3 2 15 15 C 1.53039 * 109.46264 * 240.02862 * 14 4 3 16 16 C 1.53194 * 109.31131 * 178.60447 * 15 14 4 17 17 N 1.46920 * 108.76957 * 54.65339 * 16 15 14 18 18 C 1.36938 * 120.62877 * 126.40240 * 17 16 15 19 19 H 1.07996 * 120.00635 * 331.83358 * 18 17 16 20 20 C 1.38817 * 119.99624 * 151.83164 * 18 17 16 21 21 N 1.31623 * 120.00143 * 343.06831 * 20 18 17 22 22 Si 1.86801 * 119.99744 * 163.07027 * 20 18 17 23 23 H 1.48499 * 109.47460 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47140 * 119.99867 * 22 20 18 25 25 H 1.48500 * 109.47095 * 239.99604 * 22 20 18 26 26 C 1.46927 * 118.73887 * 306.38884 * 17 16 15 27 27 C 1.53044 * 109.45883 * 119.97360 * 14 4 3 28 28 H 1.08993 * 109.47059 * 300.00653 * 1 2 3 29 29 H 1.09001 * 109.46856 * 60.00263 * 1 2 3 30 30 H 1.08996 * 109.47029 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47059 * 239.99347 * 2 1 3 32 32 H 1.09001 * 109.46856 * 119.99737 * 2 1 3 33 33 H 1.09004 * 109.47258 * 59.99586 * 3 2 1 34 34 H 1.09001 * 109.47007 * 299.99644 * 3 2 1 35 35 H 1.08995 * 109.46974 * 60.00177 * 7 5 4 36 36 H 1.08996 * 109.47005 * 300.00093 * 7 5 4 37 37 H 1.09008 * 109.47109 * 59.99991 * 8 7 5 38 38 H 1.09000 * 109.47221 * 300.00489 * 8 7 5 39 39 H 1.08003 * 126.90806 * 359.97438 * 10 9 8 40 40 H 1.08008 * 126.75279 * 179.97438 * 11 10 9 41 41 H 1.08999 * 109.46272 * 0.02562 * 14 4 3 42 42 H 1.09000 * 109.49501 * 298.56509 * 15 14 4 43 43 H 1.08998 * 109.50050 * 58.66282 * 15 14 4 44 44 H 1.09000 * 109.59633 * 294.86330 * 16 15 14 45 45 H 1.09003 * 109.69983 * 174.51097 * 16 15 14 46 46 H 0.97003 * 119.99789 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.58146 * 293.81338 * 26 17 16 48 48 H 1.09003 * 109.70181 * 173.46533 * 26 17 16 49 49 H 1.08999 * 109.49814 * 301.34064 * 27 14 4 50 50 H 1.09003 * 109.49981 * 61.43315 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1794 1.4423 -1.1663 6 8 5.3922 1.4418 -1.1659 7 6 3.4264 1.4415 -2.4718 8 6 4.4210 1.4421 -3.6343 9 7 3.6891 1.4419 -4.9033 10 6 3.8373 2.3402 -5.9043 11 6 2.9746 1.9660 -6.8777 12 7 2.3493 0.8711 -6.4307 13 7 2.7950 0.5866 -5.2581 14 6 4.2371 1.4427 1.2696 15 6 5.1163 2.6927 1.3508 16 6 5.8534 2.7072 2.6936 17 7 6.5869 1.4431 2.8439 18 6 7.9284 1.4433 3.1189 19 1 8.5460 2.2679 2.7950 20 6 8.4944 0.3836 3.8143 21 7 7.7272 -0.4429 4.4931 22 14 10.3450 0.1305 3.7866 23 1 10.9770 1.1885 2.9581 24 1 10.8755 0.2043 5.1718 25 1 10.6538 -1.2021 3.2087 26 6 5.8537 0.1788 2.6939 27 6 5.1163 0.1927 1.3512 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 2.7995 2.3312 -2.5301 36 1 2.8001 0.5513 -2.5294 37 1 5.0484 0.5525 -3.5762 38 1 5.0471 2.3325 -3.5764 39 1 4.5090 3.1858 -5.9227 40 1 2.8211 2.4552 -7.8283 41 1 3.5283 1.4425 2.0977 42 1 5.8418 2.6806 0.5374 43 1 4.4921 3.5826 1.2690 44 1 5.1330 2.8104 3.5051 45 1 6.5543 3.5417 2.7191 46 1 8.1229 -1.1833 4.9793 47 1 5.1333 0.0757 3.5054 48 1 6.5532 -0.6568 2.7180 49 1 4.4921 -0.6971 1.2697 50 1 5.8418 0.2044 0.5378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479991702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:02 Heat of formation + Delta-G solvation = 83.066890 kcal Electronic energy + Delta-G solvation = -30019.518626 eV Core-core repulsion = 26084.792788 eV Total energy + Delta-G solvation = -3934.725838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.46941 -40.37857 -37.32190 -36.12398 -35.44653 -33.46002 -32.15928 -31.37927 -31.16694 -30.04727 -29.42499 -26.37162 -26.02043 -24.50400 -22.93462 -22.44625 -22.26888 -21.73539 -21.41095 -19.58845 -18.86023 -17.89569 -16.91158 -16.86526 -16.24930 -15.96829 -15.75528 -15.15459 -14.85848 -14.69258 -14.50166 -14.09571 -13.81664 -13.66549 -13.48366 -13.21136 -12.98731 -12.88497 -12.67610 -12.54652 -12.33510 -12.09785 -11.88607 -11.74322 -11.52116 -11.43175 -11.14723 -11.14640 -10.99970 -10.86367 -10.70506 -10.39557 -10.30918 -10.15356 -10.05710 -9.71890 -9.64960 -9.55776 -9.33235 -8.54646 -8.33291 -6.64400 -5.76389 -3.17854 1.35033 2.01896 2.34697 2.61250 3.03850 3.39625 3.47350 3.50103 4.07865 4.24122 4.31325 4.43824 4.52709 4.64556 4.75909 4.80647 4.90950 4.96179 5.05400 5.15661 5.22070 5.32312 5.33545 5.40290 5.44459 5.50859 5.53990 5.58416 5.65443 5.81574 5.84801 5.87633 5.90229 6.08133 6.13716 6.28506 6.29245 6.33677 6.50387 6.57614 6.72398 6.80310 6.97763 7.06198 7.35728 7.53093 7.69423 7.83290 8.22288 8.26994 8.48273 9.24286 9.87691 10.43972 11.32476 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.002922 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.867583 B = 9579.615932 C =10865.022280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.106 3.894 4 N -0.605 5.605 5 C 0.517 3.483 6 O -0.522 6.522 7 C -0.155 4.155 8 C 0.130 3.870 9 N -0.288 5.288 10 C -0.048 4.048 11 C -0.056 4.056 12 N -0.275 5.275 13 N -0.085 5.085 14 C 0.160 3.840 15 C -0.146 4.146 16 C 0.150 3.850 17 N -0.590 5.590 18 C -0.247 4.247 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.176 3.824 27 C -0.153 4.153 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.191 0.809 40 H 0.189 0.811 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.015 0.985 45 H 0.055 0.945 46 H 0.252 0.748 47 H 0.015 0.985 48 H 0.089 0.911 49 H 0.044 0.956 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.191 6.345 -15.953 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.017 4.017 4 N -0.337 5.337 5 C 0.304 3.696 6 O -0.398 6.398 7 C -0.196 4.196 8 C 0.009 3.991 9 N -0.082 5.082 10 C -0.199 4.199 11 C -0.213 4.213 12 N -0.141 5.141 13 N -0.065 5.065 14 C 0.058 3.942 15 C -0.186 4.186 16 C 0.023 3.977 17 N -0.312 5.312 18 C -0.377 4.377 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.050 3.950 27 C -0.193 4.193 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.208 0.792 40 H 0.206 0.794 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.033 0.967 48 H 0.107 0.893 49 H 0.062 0.938 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.242 4.954 -15.397 21.551 hybrid contribution 1.404 0.814 -0.171 1.632 sum -12.838 5.768 -15.568 20.987 Atomic orbital electron populations 1.21700 0.95128 1.02097 1.01787 1.21994 0.96090 0.97097 1.03184 1.21708 0.79866 0.97098 1.03037 1.48307 1.06230 1.72676 1.06524 1.20020 0.87879 0.77018 0.84730 1.90762 1.13324 1.48732 1.87028 1.21963 0.99336 1.05948 0.92332 1.21912 0.92996 1.07217 0.77013 1.47608 1.27102 1.18375 1.15134 1.23760 1.06116 0.99784 0.90223 1.23634 0.98447 0.97271 1.01977 1.75126 1.21964 1.13912 1.03073 1.78304 1.04014 1.14563 1.09627 1.21162 0.93135 0.97366 0.82492 1.22446 0.99172 0.94951 1.02047 1.20835 0.94180 0.90355 0.92310 1.44026 1.05892 0.99388 1.81905 1.19215 0.83237 1.06531 1.28669 0.91744 1.25028 0.97790 0.99964 0.96950 1.70036 1.33851 1.18277 1.32775 0.86238 0.85623 0.77812 0.77213 1.20248 1.21795 1.21582 1.20722 0.94120 0.90576 0.89628 1.22627 0.98970 0.94360 1.03318 0.92523 0.92715 0.92371 0.91741 0.91012 0.90127 0.90833 0.88434 0.87270 0.87073 0.86560 0.79224 0.79414 0.90510 0.89975 0.93694 0.96736 0.92648 0.93756 0.96674 0.89330 0.93765 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.14 -1.32 6.26 -26.73 -0.17 -1.49 16 3 C 0.11 0.98 5.18 -4.04 -0.02 0.96 16 4 N -0.61 -7.74 2.42 -166.06 -0.40 -8.14 16 5 C 0.52 6.75 7.10 -10.98 -0.08 6.67 16 6 O -0.52 -8.85 12.22 5.55 0.07 -8.78 16 7 C -0.15 -1.43 4.38 -27.88 -0.12 -1.56 16 8 C 0.13 1.16 5.74 -4.05 -0.02 1.14 16 9 N -0.29 -2.82 3.44 -61.26 -0.21 -3.03 16 10 C -0.05 -0.37 11.57 -17.05 -0.20 -0.56 16 11 C -0.06 -0.49 12.05 -17.74 -0.21 -0.70 16 12 N -0.27 -3.43 12.41 30.24 0.38 -3.05 16 13 N -0.08 -1.06 12.92 60.35 0.78 -0.28 16 14 C 0.16 2.60 2.51 -67.89 -0.17 2.43 16 15 C -0.15 -2.59 5.27 -26.61 -0.14 -2.73 16 16 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 17 N -0.59 -14.91 2.99 -172.32 -0.52 -15.42 16 18 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 19 H 0.06 1.78 7.88 -52.49 -0.41 1.37 16 20 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 21 N -0.90 -26.43 11.19 55.49 0.62 -25.81 16 22 Si 0.90 22.07 29.59 -169.99 -5.03 17.04 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.18 4.22 5.30 -3.71 -0.02 4.20 16 27 C -0.15 -2.99 5.27 -26.61 -0.14 -3.13 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.61 7.22 -51.93 -0.37 0.24 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 34 H 0.07 0.55 6.44 -51.93 -0.33 0.21 16 35 H 0.10 0.75 7.40 -51.93 -0.38 0.37 16 36 H 0.11 1.01 7.16 -51.93 -0.37 0.64 16 37 H 0.11 1.09 8.10 -51.92 -0.42 0.67 16 38 H 0.12 0.88 8.03 -51.93 -0.42 0.47 16 39 H 0.19 0.74 8.06 -52.48 -0.42 0.31 16 40 H 0.19 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.08 1.20 7.79 -51.93 -0.40 0.80 16 42 H 0.08 1.65 6.21 -51.93 -0.32 1.32 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.09 2.41 6.07 -51.93 -0.31 2.10 16 49 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.08 1.73 6.21 -51.93 -0.32 1.41 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -33.86 393.98 -7.82 -41.68 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -8.27 Total: -0.68 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.18 Total: 0.54 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.65 Total: -55.73 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.07 Total: -8.78 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.86 -7.82 -41.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479991702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.746 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds