Wall clock time and date at job start Tue Mar 31 2020 19:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47189 * 2 1 4 4 N 1.46497 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99635 * 89.99930 * 4 3 2 6 6 O 1.21285 * 120.00118 * 180.02562 * 5 4 3 7 7 C 1.50706 * 120.00213 * 359.97438 * 5 4 3 8 8 C 1.52998 * 109.47164 * 179.97438 * 7 5 4 9 9 N 1.46495 * 109.47302 * 180.02562 * 8 7 5 10 10 C 1.35310 * 125.87379 * 125.00218 * 9 8 7 11 11 C 1.35347 * 106.17968 * 179.97438 * 10 9 8 12 12 N 1.33775 * 106.49638 * 359.97438 * 11 10 9 13 13 N 1.28630 * 108.88462 * 0.02562 * 12 11 10 14 14 C 1.46493 * 120.00278 * 269.99575 * 4 3 2 15 15 C 1.53039 * 109.46264 * 240.02862 * 14 4 3 16 16 C 1.53194 * 109.31131 * 178.60447 * 15 14 4 17 17 N 1.46920 * 108.76957 * 54.65339 * 16 15 14 18 18 C 1.36938 * 120.62877 * 126.40240 * 17 16 15 19 19 H 1.07996 * 120.00635 * 331.83358 * 18 17 16 20 20 C 1.38817 * 119.99624 * 151.83164 * 18 17 16 21 21 N 1.31623 * 120.00143 * 343.06831 * 20 18 17 22 22 Si 1.86801 * 119.99744 * 163.07027 * 20 18 17 23 23 H 1.48499 * 109.47460 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47140 * 119.99867 * 22 20 18 25 25 H 1.48500 * 109.47095 * 239.99604 * 22 20 18 26 26 C 1.46927 * 118.73887 * 306.38884 * 17 16 15 27 27 C 1.53044 * 109.45883 * 119.97360 * 14 4 3 28 28 H 1.08993 * 109.47059 * 300.00653 * 1 2 3 29 29 H 1.09001 * 109.46856 * 60.00263 * 1 2 3 30 30 H 1.08996 * 109.47029 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47059 * 239.99347 * 2 1 3 32 32 H 1.09001 * 109.46856 * 119.99737 * 2 1 3 33 33 H 1.09004 * 109.47258 * 59.99586 * 3 2 1 34 34 H 1.09001 * 109.47007 * 299.99644 * 3 2 1 35 35 H 1.08995 * 109.46974 * 60.00177 * 7 5 4 36 36 H 1.08996 * 109.47005 * 300.00093 * 7 5 4 37 37 H 1.09008 * 109.47109 * 59.99991 * 8 7 5 38 38 H 1.09000 * 109.47221 * 300.00489 * 8 7 5 39 39 H 1.08003 * 126.90806 * 359.97438 * 10 9 8 40 40 H 1.08008 * 126.75279 * 179.97438 * 11 10 9 41 41 H 1.08999 * 109.46272 * 0.02562 * 14 4 3 42 42 H 1.09000 * 109.49501 * 298.56509 * 15 14 4 43 43 H 1.08998 * 109.50050 * 58.66282 * 15 14 4 44 44 H 1.09000 * 109.59633 * 294.86330 * 16 15 14 45 45 H 1.09003 * 109.69983 * 174.51097 * 16 15 14 46 46 H 0.97003 * 119.99789 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.58146 * 293.81338 * 26 17 16 48 48 H 1.09003 * 109.70181 * 173.46533 * 26 17 16 49 49 H 1.08999 * 109.49814 * 301.34064 * 27 14 4 50 50 H 1.09003 * 109.49981 * 61.43315 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1794 1.4423 -1.1663 6 8 5.3922 1.4418 -1.1659 7 6 3.4264 1.4415 -2.4718 8 6 4.4210 1.4421 -3.6343 9 7 3.6891 1.4419 -4.9033 10 6 3.8373 2.3402 -5.9043 11 6 2.9746 1.9660 -6.8777 12 7 2.3493 0.8711 -6.4307 13 7 2.7950 0.5866 -5.2581 14 6 4.2371 1.4427 1.2696 15 6 5.1163 2.6927 1.3508 16 6 5.8534 2.7072 2.6936 17 7 6.5869 1.4431 2.8439 18 6 7.9284 1.4433 3.1189 19 1 8.5460 2.2679 2.7950 20 6 8.4944 0.3836 3.8143 21 7 7.7272 -0.4429 4.4931 22 14 10.3450 0.1305 3.7866 23 1 10.9770 1.1885 2.9581 24 1 10.8755 0.2043 5.1718 25 1 10.6538 -1.2021 3.2087 26 6 5.8537 0.1788 2.6939 27 6 5.1163 0.1927 1.3512 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 2.7995 2.3312 -2.5301 36 1 2.8001 0.5513 -2.5294 37 1 5.0484 0.5525 -3.5762 38 1 5.0471 2.3325 -3.5764 39 1 4.5090 3.1858 -5.9227 40 1 2.8211 2.4552 -7.8283 41 1 3.5283 1.4425 2.0977 42 1 5.8418 2.6806 0.5374 43 1 4.4921 3.5826 1.2690 44 1 5.1330 2.8104 3.5051 45 1 6.5543 3.5417 2.7191 46 1 8.1229 -1.1833 4.9793 47 1 5.1333 0.0757 3.5054 48 1 6.5532 -0.6568 2.7180 49 1 4.4921 -0.6971 1.2697 50 1 5.8418 0.2044 0.5378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479991702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:01 Heat of formation + Delta-G solvation = 62.086407 kcal Electronic energy + Delta-G solvation = -30020.428408 eV Core-core repulsion = 26084.792788 eV Total energy + Delta-G solvation = -3935.635620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.17294 -41.49210 -38.83223 -37.23446 -36.27411 -34.92405 -33.44819 -32.42677 -31.92934 -31.63780 -30.99496 -27.44175 -27.13321 -25.88623 -23.92647 -23.86019 -23.53190 -22.67735 -22.23650 -21.12427 -19.92173 -18.99588 -18.44769 -17.71260 -17.21278 -17.16342 -16.71062 -16.63449 -15.77934 -15.67352 -15.46126 -15.35252 -15.28943 -14.98917 -14.80821 -14.46064 -14.22726 -14.07631 -13.97717 -13.63216 -13.24919 -13.08236 -13.04583 -12.84956 -12.71560 -12.64488 -12.59490 -12.46330 -12.25341 -12.13740 -11.98243 -11.86266 -11.79344 -11.62786 -11.38558 -11.22395 -11.14370 -10.65606 -10.48930 -10.30779 -9.58047 -8.68865 -7.89270 -5.33378 0.67693 1.31864 1.42914 1.45244 1.55693 1.60163 1.65986 2.05216 2.49516 3.25871 3.39369 3.43908 3.62715 3.68304 3.76910 3.93518 4.02197 4.03534 4.17997 4.22535 4.27482 4.34970 4.35613 4.38895 4.49104 4.53606 4.57536 4.62740 4.69537 4.71348 4.83316 4.86382 4.88443 4.94048 4.98632 5.09237 5.16583 5.22905 5.26234 5.30901 5.42969 5.46470 5.50906 5.61883 5.64191 5.66277 5.78527 6.38307 6.47561 7.13843 7.19483 7.54626 7.85475 8.36201 9.17374 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.002922 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.867583 B = 9579.615932 C =10865.022280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.104 3.896 4 N -0.603 5.603 5 C 0.515 3.485 6 O -0.565 6.565 7 C -0.139 4.139 8 C 0.132 3.868 9 N -0.289 5.289 10 C -0.034 4.034 11 C -0.064 4.064 12 N -0.311 5.311 13 N -0.124 5.124 14 C 0.169 3.831 15 C -0.131 4.131 16 C 0.146 3.854 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.062 0.938 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.292 1.292 26 C 0.184 3.816 27 C -0.136 4.136 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.133 0.867 39 H 0.231 0.769 40 H 0.218 0.782 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.022 0.978 45 H 0.052 0.948 46 H 0.250 0.750 47 H 0.002 0.998 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.561 8.424 -17.598 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C -0.018 4.018 4 N -0.334 5.334 5 C 0.303 3.697 6 O -0.444 6.444 7 C -0.180 4.180 8 C 0.011 3.989 9 N -0.083 5.083 10 C -0.186 4.186 11 C -0.221 4.221 12 N -0.177 5.177 13 N -0.103 5.103 14 C 0.066 3.934 15 C -0.170 4.170 16 C 0.020 3.980 17 N -0.333 5.333 18 C -0.389 4.389 19 H 0.079 0.921 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.792 3.208 23 H -0.193 1.193 24 H -0.215 1.215 25 H -0.218 1.218 26 C 0.058 3.942 27 C -0.176 4.176 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.114 0.886 38 H 0.151 0.849 39 H 0.247 0.753 40 H 0.235 0.765 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.020 0.980 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.670 7.042 -17.061 24.212 hybrid contribution 1.818 0.216 0.304 1.856 sum -13.852 7.258 -16.758 22.921 Atomic orbital electron populations 1.21663 0.93579 1.02308 1.02699 1.21948 0.97369 0.96859 1.01955 1.21972 0.77257 0.97469 1.05057 1.48230 1.07681 1.72342 1.05128 1.20629 0.87511 0.75711 0.85819 1.90758 1.15411 1.50524 1.87682 1.21838 0.98989 1.07164 0.89963 1.21891 0.92790 1.07385 0.76830 1.47674 1.26641 1.18418 1.15543 1.24447 1.05558 0.99727 0.88846 1.24249 0.98105 0.96407 1.03375 1.75074 1.23316 1.15702 1.03565 1.78272 1.05730 1.16068 1.10229 1.20813 0.92976 0.94721 0.84857 1.22221 0.98958 0.97041 0.98812 1.21001 0.94227 0.88340 0.94459 1.44274 1.05662 1.01113 1.82216 1.19491 0.84824 1.06491 1.28117 0.92076 1.25756 1.01811 0.99978 0.97070 1.70174 1.35394 1.18724 1.33728 0.85263 0.80876 0.77516 0.77159 1.19307 1.21512 1.21837 1.20480 0.93066 0.89110 0.91572 1.22327 0.98766 0.97034 0.99446 0.91819 0.91547 0.92607 0.92381 0.92931 0.88829 0.88072 0.85913 0.87087 0.88598 0.84851 0.75300 0.76500 0.89201 0.92217 0.90368 0.95981 0.92968 0.94127 0.97977 0.93331 0.92648 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.91 71.99 0.71 -1.08 16 2 C -0.14 -2.32 6.26 30.60 0.19 -2.13 16 3 C 0.10 1.59 5.18 86.38 0.45 2.04 16 4 N -0.60 -14.11 2.42 -797.68 -1.93 -16.04 16 5 C 0.52 12.60 7.10 87.66 0.62 13.22 16 6 O -0.56 -18.92 12.22 -3.04 -0.04 -18.96 16 7 C -0.14 -2.24 4.38 29.85 0.13 -2.11 16 8 C 0.13 2.12 5.74 86.38 0.50 2.62 16 9 N -0.29 -5.05 3.44 -347.74 -1.20 -6.24 16 10 C -0.03 -0.42 11.57 83.49 0.97 0.54 16 11 C -0.06 -0.96 12.05 83.73 1.01 0.04 16 12 N -0.31 -7.42 12.41 -58.25 -0.72 -8.15 16 13 N -0.12 -2.95 12.92 37.02 0.48 -2.47 16 14 C 0.17 5.29 2.51 45.02 0.11 5.40 16 15 C -0.13 -4.43 5.27 30.67 0.16 -4.27 16 16 C 0.15 6.07 6.52 86.36 0.56 6.63 16 17 N -0.61 -31.51 2.99 -699.11 -2.09 -33.61 16 18 C -0.26 -14.79 9.58 84.03 0.81 -13.98 16 19 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 20 C -0.05 -2.93 4.92 84.86 0.42 -2.52 16 21 N -0.93 -56.38 11.19 21.65 0.24 -56.13 16 22 Si 0.96 46.37 29.59 68.60 2.03 48.40 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 C 0.18 9.14 5.30 86.36 0.46 9.60 16 27 C -0.14 -5.39 5.27 30.67 0.16 -5.23 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.02 7.22 -2.39 -0.02 1.00 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.25 7.92 -2.38 -0.02 1.23 16 34 H 0.10 1.05 6.44 -2.39 -0.02 1.03 16 35 H 0.12 1.39 7.40 -2.39 -0.02 1.37 16 36 H 0.11 1.82 7.16 -2.39 -0.02 1.81 16 37 H 0.10 1.85 8.10 -2.38 -0.02 1.83 16 38 H 0.13 1.69 8.03 -2.39 -0.02 1.67 16 39 H 0.23 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.22 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.09 2.62 7.79 -2.39 -0.02 2.60 16 42 H 0.06 2.35 6.21 -2.39 -0.01 2.34 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 46 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.05 2.78 6.07 -2.39 -0.01 2.76 16 49 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.05 2.44 6.21 -2.39 -0.01 2.42 16 Total: -1.00 -77.40 393.98 4.94 -72.46 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.92 Total: 11.96 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 7.26 Total: 8.79 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -5.22 Total: -122.64 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.04 Total: -18.96 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -77.40 4.94 -72.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479991702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.546 kcal (2) G-P(sol) polarization free energy of solvation -77.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds