Wall clock time and date at job start Tue Mar 31 2020 18:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47096 * 2 1 4 4 N 1.46500 * 109.47273 * 179.97438 * 3 2 1 5 5 C 1.34808 * 126.59358 * 125.00205 * 4 3 2 6 6 C 1.36594 * 106.84143 * 180.02562 * 5 4 3 7 7 C 1.47523 * 125.77175 * 179.97438 * 6 5 4 8 8 O 1.21590 * 120.00108 * 7.33435 * 7 6 5 9 9 N 1.34778 * 119.99941 * 187.32932 * 7 6 5 10 10 C 1.46923 * 120.62941 * 6.36253 * 9 7 6 11 11 C 1.53190 * 108.77903 * 233.60783 * 10 9 7 12 12 C 1.53043 * 109.30958 * 305.36979 * 11 10 9 13 13 C 1.53041 * 109.54209 * 61.36408 * 12 11 10 14 14 H 1.08996 * 109.49735 * 58.61718 * 13 12 11 15 15 C 1.52994 * 109.49758 * 178.68362 * 13 12 11 16 16 N 1.46505 * 109.46912 * 184.93064 * 15 13 12 17 17 C 1.46498 * 120.00190 * 269.99973 * 16 15 13 18 18 C 1.36934 * 119.99530 * 90.00028 * 16 15 13 19 19 H 1.08004 * 120.00227 * 3.69751 * 18 16 15 20 20 C 1.38812 * 119.99984 * 183.96940 * 18 16 15 21 21 N 1.31626 * 119.99764 * 325.28131 * 20 18 16 22 22 Si 1.86807 * 120.00248 * 145.27862 * 20 18 16 23 23 H 1.48502 * 109.46796 * 94.99973 * 22 20 18 24 24 H 1.48500 * 109.46906 * 215.00063 * 22 20 18 25 25 H 1.48495 * 109.46630 * 335.00298 * 22 20 18 26 26 C 1.46928 * 120.60403 * 186.38654 * 9 7 6 27 27 N 1.34401 * 108.45458 * 0.23877 * 6 5 4 28 28 N 1.28759 * 109.52427 * 359.58976 * 27 6 5 29 29 H 1.08995 * 109.46965 * 299.99631 * 1 2 3 30 30 H 1.09004 * 109.46944 * 59.99631 * 1 2 3 31 31 H 1.09000 * 109.46841 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47385 * 240.00451 * 2 1 3 33 33 H 1.08995 * 109.47522 * 120.00286 * 2 1 3 34 34 H 1.09001 * 109.46635 * 59.99992 * 3 2 1 35 35 H 1.08995 * 109.47169 * 300.00502 * 3 2 1 36 36 H 1.08007 * 126.57861 * 0.02562 * 5 4 3 37 37 H 1.09010 * 109.58643 * 113.81906 * 10 9 7 38 38 H 1.09001 * 109.70665 * 353.47039 * 10 9 7 39 39 H 1.09000 * 109.49847 * 185.41779 * 11 10 9 40 40 H 1.09001 * 109.49538 * 65.31371 * 11 10 9 41 41 H 1.09002 * 109.46326 * 301.33835 * 12 11 10 42 42 H 1.09004 * 109.45917 * 181.38702 * 12 11 10 43 43 H 1.09004 * 109.47321 * 64.93629 * 15 13 12 44 44 H 1.09000 * 109.47333 * 304.93292 * 15 13 12 45 45 H 1.08998 * 109.46971 * 264.38315 * 17 16 15 46 46 H 1.08990 * 109.47091 * 24.38538 * 17 16 15 47 47 H 1.09003 * 109.46939 * 144.39128 * 17 16 15 48 48 H 0.96997 * 119.99738 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.61672 * 6.61611 * 26 9 7 50 50 H 1.09006 * 109.55859 * 246.19687 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0633 -0.8857 6 6 5.5945 1.7982 -0.5073 7 6 6.8109 2.2765 -1.1914 8 8 6.7213 3.0776 -2.1017 9 7 8.0215 1.8256 -0.8072 10 6 8.1390 0.7566 0.1939 11 6 9.0639 1.2334 1.3181 12 6 10.3985 1.6831 0.7191 13 6 10.1612 2.8522 -0.2396 14 1 9.6872 3.6732 0.2981 15 6 11.4996 3.3223 -0.8128 16 7 11.2859 4.5141 -1.6376 17 6 11.0018 4.3738 -3.0679 18 6 11.3519 5.7592 -1.0714 19 1 11.6201 5.8657 -0.0307 20 6 11.0686 6.8841 -1.8337 21 7 11.3973 6.9155 -3.1079 22 14 10.2208 8.3534 -1.0514 23 1 11.2417 9.3406 -0.6171 24 1 9.3111 8.9847 -2.0409 25 1 9.4358 7.9028 0.1258 26 6 9.2484 2.3944 -1.3816 27 7 5.5636 1.0230 0.5901 28 7 4.3405 0.7966 0.9228 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9967 2.6565 -1.7326 37 1 8.5591 -0.1352 -0.2714 38 1 7.1552 0.5263 0.6029 39 1 9.2364 0.4161 2.0185 40 1 8.5997 2.0695 1.8411 41 1 10.8505 0.8535 0.1753 42 1 11.0674 1.9998 1.5194 43 1 11.9314 2.5299 -1.4243 44 1 12.1802 3.5628 0.0039 45 1 11.9273 4.4783 -3.6341 46 1 10.5686 3.3919 -3.2576 47 1 10.2982 5.1472 -3.3760 48 1 11.1989 7.7015 -3.6407 49 1 8.9961 3.2471 -2.0120 50 1 9.7587 1.6363 -1.9759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480083841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:52 Heat of formation + Delta-G solvation = 95.460150 kcal Electronic energy + Delta-G solvation = -29777.521473 eV Core-core repulsion = 25843.333047 eV Total energy + Delta-G solvation = -3934.188426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.44178 -39.66998 -37.41627 -36.42397 -35.43107 -33.26468 -32.67745 -31.58321 -31.04085 -29.88353 -27.62712 -26.34904 -25.39178 -25.37318 -23.35372 -22.88434 -22.26019 -21.79617 -20.76301 -19.86256 -19.10673 -17.57127 -16.62170 -16.49138 -16.43518 -15.85947 -15.46631 -15.04688 -14.79030 -14.66962 -14.31248 -14.06018 -13.93710 -13.61776 -13.33876 -13.26307 -13.11890 -12.73886 -12.64979 -12.39547 -12.34391 -12.28465 -12.04741 -11.79158 -11.41597 -11.32756 -11.16178 -10.80039 -10.70559 -10.64512 -10.55023 -10.48130 -10.15975 -10.07763 -9.92490 -9.81580 -9.66205 -9.54082 -9.41966 -8.28284 -8.11380 -6.84800 -5.76327 -2.86728 0.95460 1.62139 1.75383 3.19634 3.40165 3.48690 3.58657 3.63760 3.87105 4.05132 4.17203 4.43335 4.56581 4.63775 4.65711 4.79237 4.80202 4.98759 5.06687 5.13950 5.24354 5.29488 5.37598 5.38974 5.42793 5.49677 5.52199 5.60854 5.67707 5.82595 5.92805 6.10170 6.10709 6.18224 6.27811 6.30015 6.37977 6.43368 6.55175 6.63734 6.81288 6.87112 6.95432 7.10059 7.53564 7.62113 7.77168 7.82033 7.96183 8.37628 8.41062 9.30544 10.00735 10.45714 11.33828 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.002915 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.474982 B = 9604.772416 C =10711.500423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.360 5.360 5 C 0.091 3.909 6 C -0.089 4.089 7 C 0.596 3.404 8 O -0.534 6.534 9 N -0.592 5.592 10 C 0.072 3.928 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.122 4.122 14 H 0.075 0.925 15 C 0.163 3.837 16 N -0.606 5.606 17 C 0.150 3.850 18 C -0.258 4.258 19 H 0.075 0.925 20 C 0.009 3.991 21 N -0.886 5.886 22 Si 0.870 3.130 23 H -0.292 1.292 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.123 3.877 27 N -0.204 5.204 28 N -0.069 5.069 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.205 0.795 37 H 0.058 0.942 38 H 0.135 0.865 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.048 0.952 45 H 0.011 0.989 46 H 0.004 0.996 47 H 0.064 0.936 48 H 0.252 0.748 49 H 0.104 0.896 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.800 -17.133 6.367 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C -0.001 4.001 4 N -0.146 5.146 5 C -0.065 4.065 6 C -0.228 4.228 7 C 0.381 3.619 8 O -0.410 6.410 9 N -0.323 5.323 10 C -0.052 4.052 11 C -0.165 4.165 12 C -0.153 4.153 13 C -0.144 4.144 14 H 0.093 0.907 15 C 0.035 3.965 16 N -0.328 5.328 17 C 0.006 3.994 18 C -0.386 4.386 19 H 0.093 0.907 20 C -0.189 4.189 21 N -0.530 5.530 22 Si 0.699 3.301 23 H -0.219 1.219 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.002 3.998 27 N -0.077 5.077 28 N -0.048 5.048 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.222 0.778 37 H 0.076 0.924 38 H 0.151 0.849 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.030 0.970 46 H 0.022 0.978 47 H 0.083 0.917 48 H 0.062 0.938 49 H 0.122 0.878 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.849 -17.442 6.957 27.324 hybrid contribution -0.587 1.536 -0.412 1.695 sum -20.436 -15.906 6.545 26.711 Atomic orbital electron populations 1.21707 0.93843 1.02870 1.02394 1.21833 0.96962 0.94565 1.04230 1.22172 0.72554 1.00074 1.05262 1.50497 1.08733 1.35330 1.19993 1.23403 0.90072 0.96986 0.96068 1.21615 0.94816 1.07480 0.98860 1.16832 0.81670 0.80924 0.82428 1.90842 1.85958 1.34555 1.29616 1.47981 1.05504 1.37314 1.41543 1.22688 1.04643 0.88688 0.89177 1.21823 0.96198 1.01109 0.97414 1.21582 0.96529 0.98293 0.98918 1.22268 0.99410 0.96955 0.95767 0.90650 1.20670 0.92639 0.89030 0.94169 1.44030 1.82715 1.01258 1.04830 1.21086 0.98805 0.96081 0.83436 1.19097 1.41803 0.83094 0.94592 0.90724 1.24646 1.01701 0.97220 0.95339 1.70346 1.45683 1.29126 1.07831 0.86742 0.80952 0.83290 0.79150 1.21917 1.21571 1.20717 1.21870 0.82910 0.98862 0.96132 1.74171 1.11829 1.10952 1.10754 1.81949 0.93724 1.17391 1.11747 0.92062 0.92188 0.91634 0.91011 0.90014 0.88310 0.87628 0.77824 0.92386 0.84888 0.91409 0.91806 0.92367 0.92008 0.94492 0.93317 0.97049 0.97776 0.91749 0.93789 0.87755 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 9.91 37.16 0.37 -0.06 16 2 C -0.14 -0.62 6.14 -26.73 -0.16 -0.78 16 3 C 0.12 0.58 6.54 -4.04 -0.03 0.55 16 4 N -0.36 -3.33 3.69 -61.06 -0.23 -3.55 16 5 C 0.09 0.97 11.28 -16.84 -0.19 0.78 16 6 C -0.09 -1.26 6.74 -83.55 -0.56 -1.82 16 7 C 0.60 10.44 7.68 -12.47 -0.10 10.34 16 8 O -0.53 -11.02 16.32 5.29 0.09 -10.94 16 9 N -0.59 -9.93 2.97 -173.99 -0.52 -10.45 16 10 C 0.07 0.99 6.31 -3.71 -0.02 0.96 16 11 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 12 C -0.11 -1.65 5.17 -26.69 -0.14 -1.79 16 13 C -0.12 -2.23 2.54 -90.50 -0.23 -2.46 16 14 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 15 C 0.16 3.35 5.14 -4.04 -0.02 3.33 16 16 N -0.61 -15.50 2.77 -181.12 -0.50 -16.00 16 17 C 0.15 3.84 8.16 59.85 0.49 4.33 16 18 C -0.26 -7.31 9.64 -15.06 -0.15 -7.45 16 19 H 0.07 2.08 8.02 -52.48 -0.42 1.66 16 20 C 0.01 0.27 4.84 -17.43 -0.08 0.18 16 21 N -0.89 -26.64 10.82 55.49 0.60 -26.04 16 22 Si 0.87 22.55 29.67 -169.99 -5.04 17.51 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 26 C 0.12 2.28 4.43 -3.71 -0.02 2.27 16 27 N -0.20 -2.80 8.71 32.85 0.29 -2.52 16 28 N -0.07 -0.83 13.65 60.35 0.82 -0.01 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.11 0.26 8.08 -51.93 -0.42 -0.16 16 36 H 0.21 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.13 1.82 3.68 -119.06 -0.44 1.38 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 44 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 45 H 0.01 0.30 8.05 -51.93 -0.42 -0.11 16 46 H 0.00 0.08 6.30 -51.93 -0.33 -0.24 16 47 H 0.06 1.82 6.17 -51.93 -0.32 1.50 16 48 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.10 2.33 5.40 -51.93 -0.28 2.05 16 50 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -34.66 394.52 -8.06 -42.72 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -8.51 Total: -3.20 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.00 Total: 6.53 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.46 Total: -58.56 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.04 Total: 17.51 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.66 -8.06 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480083841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.179 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds