Wall clock time and date at job start Tue Mar 31 2020 18:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47096 * 2 1 4 4 N 1.46500 * 109.47273 * 179.97438 * 3 2 1 5 5 C 1.34808 * 126.59358 * 125.00205 * 4 3 2 6 6 C 1.36594 * 106.84143 * 180.02562 * 5 4 3 7 7 C 1.47523 * 125.77175 * 179.97438 * 6 5 4 8 8 O 1.21590 * 120.00108 * 7.33435 * 7 6 5 9 9 N 1.34778 * 119.99941 * 187.32932 * 7 6 5 10 10 C 1.46923 * 120.62941 * 6.36253 * 9 7 6 11 11 C 1.53190 * 108.77903 * 233.60783 * 10 9 7 12 12 C 1.53043 * 109.30958 * 305.36979 * 11 10 9 13 13 C 1.53041 * 109.54209 * 61.36408 * 12 11 10 14 14 H 1.08996 * 109.49735 * 58.61718 * 13 12 11 15 15 C 1.52994 * 109.49758 * 178.68362 * 13 12 11 16 16 N 1.46505 * 109.46912 * 184.93064 * 15 13 12 17 17 C 1.46498 * 120.00190 * 269.99973 * 16 15 13 18 18 C 1.36934 * 119.99530 * 90.00028 * 16 15 13 19 19 H 1.08004 * 120.00227 * 3.69751 * 18 16 15 20 20 C 1.38812 * 119.99984 * 183.96940 * 18 16 15 21 21 N 1.31626 * 119.99764 * 325.28131 * 20 18 16 22 22 Si 1.86807 * 120.00248 * 145.27862 * 20 18 16 23 23 H 1.48502 * 109.46796 * 94.99973 * 22 20 18 24 24 H 1.48500 * 109.46906 * 215.00063 * 22 20 18 25 25 H 1.48495 * 109.46630 * 335.00298 * 22 20 18 26 26 C 1.46928 * 120.60403 * 186.38654 * 9 7 6 27 27 N 1.34401 * 108.45458 * 0.23877 * 6 5 4 28 28 N 1.28759 * 109.52427 * 359.58976 * 27 6 5 29 29 H 1.08995 * 109.46965 * 299.99631 * 1 2 3 30 30 H 1.09004 * 109.46944 * 59.99631 * 1 2 3 31 31 H 1.09000 * 109.46841 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47385 * 240.00451 * 2 1 3 33 33 H 1.08995 * 109.47522 * 120.00286 * 2 1 3 34 34 H 1.09001 * 109.46635 * 59.99992 * 3 2 1 35 35 H 1.08995 * 109.47169 * 300.00502 * 3 2 1 36 36 H 1.08007 * 126.57861 * 0.02562 * 5 4 3 37 37 H 1.09010 * 109.58643 * 113.81906 * 10 9 7 38 38 H 1.09001 * 109.70665 * 353.47039 * 10 9 7 39 39 H 1.09000 * 109.49847 * 185.41779 * 11 10 9 40 40 H 1.09001 * 109.49538 * 65.31371 * 11 10 9 41 41 H 1.09002 * 109.46326 * 301.33835 * 12 11 10 42 42 H 1.09004 * 109.45917 * 181.38702 * 12 11 10 43 43 H 1.09004 * 109.47321 * 64.93629 * 15 13 12 44 44 H 1.09000 * 109.47333 * 304.93292 * 15 13 12 45 45 H 1.08998 * 109.46971 * 264.38315 * 17 16 15 46 46 H 1.08990 * 109.47091 * 24.38538 * 17 16 15 47 47 H 1.09003 * 109.46939 * 144.39128 * 17 16 15 48 48 H 0.96997 * 119.99738 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.61672 * 6.61611 * 26 9 7 50 50 H 1.09006 * 109.55859 * 246.19687 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0633 -0.8857 6 6 5.5945 1.7982 -0.5073 7 6 6.8109 2.2765 -1.1914 8 8 6.7213 3.0776 -2.1017 9 7 8.0215 1.8256 -0.8072 10 6 8.1390 0.7566 0.1939 11 6 9.0639 1.2334 1.3181 12 6 10.3985 1.6831 0.7191 13 6 10.1612 2.8522 -0.2396 14 1 9.6872 3.6732 0.2981 15 6 11.4996 3.3223 -0.8128 16 7 11.2859 4.5141 -1.6376 17 6 11.0018 4.3738 -3.0679 18 6 11.3519 5.7592 -1.0714 19 1 11.6201 5.8657 -0.0307 20 6 11.0686 6.8841 -1.8337 21 7 11.3973 6.9155 -3.1079 22 14 10.2208 8.3534 -1.0514 23 1 11.2417 9.3406 -0.6171 24 1 9.3111 8.9847 -2.0409 25 1 9.4358 7.9028 0.1258 26 6 9.2484 2.3944 -1.3816 27 7 5.5636 1.0230 0.5901 28 7 4.3405 0.7966 0.9228 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9967 2.6565 -1.7326 37 1 8.5591 -0.1352 -0.2714 38 1 7.1552 0.5263 0.6029 39 1 9.2364 0.4161 2.0185 40 1 8.5997 2.0695 1.8411 41 1 10.8505 0.8535 0.1753 42 1 11.0674 1.9998 1.5194 43 1 11.9314 2.5299 -1.4243 44 1 12.1802 3.5628 0.0039 45 1 11.9273 4.4783 -3.6341 46 1 10.5686 3.3919 -3.2576 47 1 10.2982 5.1472 -3.3760 48 1 11.1989 7.7015 -3.6407 49 1 8.9961 3.2471 -2.0120 50 1 9.7587 1.6363 -1.9759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480083841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:51 Heat of formation + Delta-G solvation = 73.546491 kcal Electronic energy + Delta-G solvation = -29778.471720 eV Core-core repulsion = 25843.333047 eV Total energy + Delta-G solvation = -3935.138673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.35768 -40.97840 -38.87766 -37.28249 -36.92575 -34.57565 -33.59484 -33.17030 -32.15696 -31.42935 -28.48829 -28.00137 -27.18434 -26.64176 -24.19276 -24.07556 -23.48979 -22.54615 -22.21306 -21.24145 -20.29449 -18.73907 -18.53701 -17.55064 -17.23039 -17.05466 -16.81578 -16.21552 -15.98318 -15.91121 -15.64295 -15.48997 -15.10791 -14.90296 -14.80548 -14.45386 -14.10800 -14.00683 -13.91653 -13.62036 -13.31141 -13.22510 -13.06091 -12.94395 -12.76090 -12.69523 -12.48562 -12.37579 -12.24438 -12.10158 -11.90331 -11.81242 -11.76363 -11.57941 -11.43514 -11.29172 -11.25776 -10.79260 -10.40868 -10.32265 -9.57289 -8.94334 -7.96807 -5.07273 0.10183 0.53612 1.05057 1.39625 1.45902 1.54913 1.97131 2.17456 2.51001 3.06820 3.16401 3.29025 3.64788 3.71210 3.82055 3.91351 3.97668 4.02549 4.13322 4.16204 4.18806 4.21685 4.35210 4.41968 4.47583 4.58599 4.63516 4.76609 4.78703 4.80890 4.87799 4.92126 4.93460 5.06019 5.11359 5.14980 5.17002 5.23098 5.28105 5.32256 5.41598 5.45802 5.47264 5.57113 5.64567 5.70697 5.73523 6.25789 6.37277 6.81603 7.09653 7.12965 7.91530 8.31990 9.12987 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.002915 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.474982 B = 9604.772416 C =10711.500423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.344 5.344 5 C 0.108 3.892 6 C -0.118 4.118 7 C 0.590 3.410 8 O -0.578 6.578 9 N -0.595 5.595 10 C 0.069 3.931 11 C -0.121 4.121 12 C -0.107 4.107 13 C -0.108 4.108 14 H 0.039 0.961 15 C 0.160 3.840 16 N -0.620 5.620 17 C 0.169 3.831 18 C -0.262 4.262 19 H 0.076 0.924 20 C -0.045 4.045 21 N -0.918 5.918 22 Si 0.931 3.069 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.281 1.281 26 C 0.129 3.871 27 N -0.216 5.216 28 N -0.080 5.080 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.231 0.769 37 H 0.077 0.923 38 H 0.139 0.861 39 H 0.101 0.899 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.052 0.948 45 H -0.009 1.009 46 H 0.033 0.967 47 H 0.029 0.971 48 H 0.249 0.751 49 H 0.061 0.939 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.493 -18.893 7.838 29.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.010 4.010 4 N -0.129 5.129 5 C -0.050 4.050 6 C -0.258 4.258 7 C 0.377 3.623 8 O -0.458 6.458 9 N -0.325 5.325 10 C -0.053 4.053 11 C -0.159 4.159 12 C -0.145 4.145 13 C -0.130 4.130 14 H 0.057 0.943 15 C 0.033 3.967 16 N -0.344 5.344 17 C 0.024 3.976 18 C -0.391 4.391 19 H 0.094 0.906 20 C -0.240 4.240 21 N -0.564 5.564 22 Si 0.760 3.240 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.207 1.207 26 C 0.007 3.993 27 N -0.088 5.088 28 N -0.059 5.059 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.155 0.845 36 H 0.248 0.752 37 H 0.095 0.905 38 H 0.156 0.844 39 H 0.119 0.881 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.009 0.991 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.058 0.942 49 H 0.079 0.921 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.562 -19.257 8.500 30.133 hybrid contribution -0.151 1.996 -0.830 2.167 sum -21.713 -17.260 7.671 28.779 Atomic orbital electron populations 1.21683 0.92344 1.03130 1.03231 1.21779 0.98105 0.94049 1.03166 1.22694 0.69793 1.00851 1.07621 1.50791 1.10044 1.33596 1.18473 1.23763 0.89097 0.95924 0.96208 1.21312 0.94683 1.09695 1.00067 1.17288 0.82743 0.80255 0.82020 1.90805 1.86743 1.36565 1.31688 1.48080 1.04815 1.37711 1.41912 1.22909 1.05433 0.88240 0.88728 1.21801 0.95038 1.01571 0.97529 1.21536 0.97614 0.97013 0.98350 1.22007 0.97422 0.97515 0.96090 0.94284 1.20906 0.93985 0.87803 0.93983 1.44262 1.82769 1.02070 1.05249 1.20777 0.96922 0.96405 0.83543 1.19397 1.40729 0.84385 0.94568 0.90638 1.25285 1.02790 0.99938 0.96033 1.70437 1.47164 1.29816 1.08977 0.85780 0.79708 0.80603 0.77928 1.21088 1.22101 1.20679 1.21610 0.83937 0.97887 0.95885 1.74087 1.12773 1.11255 1.10731 1.81863 0.93602 1.17883 1.12574 0.91454 0.91110 0.91722 0.91701 0.91508 0.86810 0.84452 0.75227 0.90502 0.84428 0.88077 0.93596 0.90210 0.91020 0.92338 0.92995 0.99122 0.94862 0.95192 0.94189 0.92053 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.91 71.98 0.71 0.23 16 2 C -0.13 -0.92 6.14 30.60 0.19 -0.73 16 3 C 0.11 0.74 6.54 86.38 0.56 1.30 16 4 N -0.34 -5.64 3.69 -347.09 -1.28 -6.92 16 5 C 0.11 2.14 11.28 83.85 0.95 3.08 16 6 C -0.12 -3.30 6.74 40.82 0.28 -3.03 16 7 C 0.59 20.96 7.68 86.69 0.67 21.63 16 8 O -0.58 -24.79 16.32 -4.00 -0.07 -24.85 16 9 N -0.59 -19.82 2.97 -822.65 -2.45 -22.27 16 10 C 0.07 1.78 6.31 86.36 0.54 2.32 16 11 C -0.12 -2.91 6.08 30.67 0.19 -2.73 16 12 C -0.11 -2.80 5.17 30.62 0.16 -2.64 16 13 C -0.11 -3.91 2.54 -10.72 -0.03 -3.94 16 14 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 15 C 0.16 6.44 5.14 86.38 0.44 6.88 16 16 N -0.62 -32.26 2.77 -726.95 -2.02 -34.28 16 17 C 0.17 8.86 8.16 127.77 1.04 9.90 16 18 C -0.26 -15.10 9.64 84.03 0.81 -14.29 16 19 H 0.08 4.25 8.02 -2.91 -0.02 4.22 16 20 C -0.04 -2.67 4.84 84.86 0.41 -2.26 16 21 N -0.92 -56.94 10.82 21.65 0.23 -56.71 16 22 Si 0.93 47.68 29.67 68.60 2.04 49.72 16 23 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 25 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16 26 C 0.13 4.78 4.43 86.36 0.38 5.16 16 27 N -0.22 -5.71 8.71 -50.00 -0.44 -6.14 16 28 N -0.08 -1.82 13.65 37.02 0.51 -1.31 16 29 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.52 8.14 -2.39 -0.02 0.51 16 35 H 0.14 0.13 8.08 -2.39 -0.02 0.11 16 36 H 0.23 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.14 3.56 3.68 -89.24 -0.33 3.23 16 39 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.06 2.11 8.07 -2.38 -0.02 2.09 16 44 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 45 H -0.01 -0.53 8.05 -2.39 -0.02 -0.55 16 46 H 0.03 1.51 6.30 -2.39 -0.02 1.49 16 47 H 0.03 1.76 6.17 -2.39 -0.01 1.75 16 48 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 49 H 0.06 2.83 5.40 -2.39 -0.01 2.82 16 50 H 0.07 2.46 8.10 -2.38 -0.02 2.44 16 Total: -1.00 -78.60 394.52 4.44 -74.16 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.60 Total: 7.72 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 7.31 Total: 20.89 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -5.44 Total: -127.63 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.07 Total: -24.85 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.04 Total: 49.72 kcal Total: -78.60 4.44 -74.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480083841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.706 kcal (2) G-P(sol) polarization free energy of solvation -78.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds