Wall clock time and date at job start Tue Mar 31 2020 19:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 N 1.46506 * 109.46869 * 119.99725 * 2 1 3 5 5 C 1.36933 * 120.00099 * 301.89875 * 4 2 1 6 6 H 1.07993 * 120.00341 * 324.86631 * 5 4 2 7 7 C 1.38817 * 120.00010 * 144.85921 * 5 4 2 8 8 N 1.31613 * 120.00250 * 157.16890 * 7 5 4 9 9 Si 1.86808 * 119.99687 * 337.17226 * 7 5 4 10 10 H 1.48499 * 109.47201 * 95.35176 * 9 7 5 11 11 H 1.48498 * 109.46973 * 215.35138 * 9 7 5 12 12 H 1.48503 * 109.47139 * 335.34818 * 9 7 5 13 13 C 1.46500 * 119.99700 * 121.90280 * 4 2 1 14 14 C 1.52997 * 109.47071 * 89.99750 * 13 4 2 15 15 C 1.52998 * 109.47120 * 179.97438 * 14 13 4 16 16 N 1.46506 * 109.47406 * 180.02562 * 15 14 13 17 17 C 1.34776 * 120.00004 * 179.97438 * 16 15 14 18 18 O 1.21277 * 120.00272 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99433 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.46787 * 180.02562 * 19 17 16 21 21 C 1.35314 * 125.87218 * 125.32403 * 20 19 17 22 22 C 1.35346 * 106.17620 * 180.11720 * 21 20 19 23 23 C 1.50703 * 126.75127 * 179.85500 * 22 21 20 24 24 C 1.52995 * 117.49805 * 84.70980 * 23 22 21 25 25 C 1.53005 * 60.03468 * 252.50047 * 24 23 22 26 26 N 1.33767 * 106.49886 * 359.59321 * 22 21 20 27 27 N 1.28637 * 108.88504 * 0.25947 * 26 22 21 28 28 H 1.09000 * 109.47673 * 305.33000 * 1 2 3 29 29 H 1.08997 * 109.47041 * 65.33404 * 1 2 3 30 30 H 1.09001 * 109.47238 * 185.32732 * 1 2 3 31 31 H 1.08996 * 109.47063 * 239.99908 * 2 1 3 32 32 H 1.08996 * 109.47240 * 175.18656 * 3 2 1 33 33 H 1.09003 * 109.47102 * 295.19067 * 3 2 1 34 34 H 1.09002 * 109.46704 * 55.18638 * 3 2 1 35 35 H 0.96999 * 119.99935 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47273 * 329.99901 * 13 4 2 37 37 H 1.08997 * 109.46908 * 209.99937 * 13 4 2 38 38 H 1.09002 * 109.46949 * 59.99952 * 14 13 4 39 39 H 1.08997 * 109.47407 * 299.99881 * 14 13 4 40 40 H 1.08998 * 109.47433 * 59.99661 * 15 14 13 41 41 H 1.09008 * 109.47326 * 300.00085 * 15 14 13 42 42 H 0.97004 * 119.99311 * 0.02562 * 16 15 14 43 43 H 1.09002 * 109.47279 * 60.00116 * 19 17 16 44 44 H 1.08997 * 109.47361 * 299.99871 * 19 17 16 45 45 H 1.08003 * 126.90826 * 359.97163 * 21 20 19 46 46 H 1.09001 * 115.56159 * 230.40462 * 23 22 21 47 47 H 1.09000 * 117.50374 * 359.97438 * 24 23 22 48 48 H 1.09008 * 117.49862 * 145.00480 * 24 23 22 49 49 H 1.08996 * 117.49614 * 107.50186 * 25 24 23 50 50 H 1.08994 * 117.49961 * 252.52834 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6557 -0.2458 2.4396 6 1 1.5322 0.8117 2.6200 7 6 1.4467 -1.1544 3.4681 8 7 1.5440 -0.7638 4.7211 9 14 1.0272 -2.9315 3.0735 10 1 2.2673 -3.7483 3.0906 11 1 0.0770 -3.4529 4.0886 12 1 0.4039 -3.0059 1.7277 13 6 2.8946 -1.8569 1.0623 14 6 4.3542 -1.3987 1.0432 15 6 5.2694 -2.6168 0.9039 16 7 6.6671 -2.1781 0.8863 17 6 7.6569 -3.0857 0.7709 18 8 7.3905 -4.2655 0.6822 19 6 9.0946 -2.6343 0.7534 20 7 9.9709 -3.8007 0.6199 21 6 10.9180 -3.9763 -0.3305 22 6 11.4817 -5.1816 -0.0829 23 6 12.5893 -5.8372 -0.8668 24 6 14.0276 -5.4538 -0.5133 25 6 13.4019 -4.9537 -1.8169 26 7 10.8664 -5.6739 0.9980 27 7 9.9766 -4.8319 1.3903 28 1 -0.3634 0.5943 0.8384 29 1 -0.3633 0.4289 -0.9339 30 1 -0.3634 -1.0232 0.0954 31 1 1.8933 -0.5138 -0.8899 32 1 3.1265 1.4437 0.0862 33 1 1.7487 1.9309 -0.9300 34 1 1.6079 1.9806 0.8438 35 1 1.3983 -1.3988 5.4398 36 1 2.6655 -2.3788 0.1331 37 1 2.7358 -2.5294 1.9053 38 1 4.5833 -0.8769 1.9724 39 1 4.5130 -0.7263 0.2002 40 1 5.0404 -3.1391 -0.0250 41 1 5.1106 -3.2890 1.7472 42 1 6.8802 -1.2345 0.9584 43 1 9.3229 -2.1123 1.6826 44 1 9.2542 -1.9621 -0.0896 45 1 11.1712 -3.2932 -1.1278 46 1 12.4035 -6.8668 -1.1725 47 1 14.1729 -4.7272 0.2861 48 1 14.7881 -6.2314 -0.5860 49 1 13.1355 -3.8984 -1.8747 50 1 13.7503 -5.4026 -2.7470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481352004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:04 Heat of formation + Delta-G solvation = 113.559029 kcal Electronic energy + Delta-G solvation = -28290.142767 eV Core-core repulsion = 24356.739167 eV Total energy + Delta-G solvation = -3933.403599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.48890 -39.84765 -37.65108 -37.19789 -35.37050 -34.62630 -32.67868 -31.92318 -30.94590 -29.88883 -28.56817 -26.37787 -25.34067 -24.37536 -23.54882 -22.99322 -22.13788 -21.42807 -21.04957 -20.32392 -19.47908 -17.92975 -17.72262 -16.60151 -16.29157 -16.09742 -15.73980 -15.56170 -15.28868 -14.92196 -14.80659 -14.64500 -14.29296 -13.71834 -13.49734 -13.12650 -13.09598 -12.61067 -12.38458 -12.22197 -11.98258 -11.95861 -11.88776 -11.77034 -11.45310 -11.42559 -11.26428 -11.12385 -10.87999 -10.78851 -10.71569 -10.52668 -10.48879 -10.41153 -9.99751 -9.92910 -9.72665 -9.42658 -9.25531 -9.16634 -8.52228 -6.91340 -6.02237 -3.41401 1.33458 1.89366 2.28632 2.32098 2.95379 3.29580 3.40297 3.47039 3.49701 3.87009 4.16135 4.31526 4.44929 4.47321 4.48702 4.49301 4.55700 4.77396 4.87644 5.02558 5.21883 5.27925 5.37579 5.42599 5.43474 5.50411 5.68755 5.70780 5.74039 5.77463 5.90224 5.92503 5.96415 6.08361 6.11968 6.22433 6.24248 6.26422 6.39466 6.48768 6.57997 6.64586 6.67600 6.81493 7.03125 7.09982 7.26565 7.94061 8.01638 8.35257 8.36982 8.95924 9.69487 10.08403 11.13343 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.001999 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.402212 B =14003.886324 C =14717.879906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.152 4.152 4 N -0.601 5.601 5 C -0.261 4.261 6 H 0.081 0.919 7 C 0.034 3.966 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.286 1.286 11 H -0.303 1.303 12 H -0.270 1.270 13 C 0.141 3.859 14 C -0.145 4.145 15 C 0.118 3.882 16 N -0.717 5.717 17 C 0.496 3.504 18 O -0.512 6.512 19 C 0.095 3.905 20 N -0.281 5.281 21 C -0.050 4.050 22 C 0.009 3.991 23 C -0.071 4.071 24 C -0.165 4.165 25 C -0.171 4.171 26 N -0.265 5.265 27 N -0.048 5.048 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.263 0.737 36 H 0.040 0.960 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.403 0.597 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.189 0.811 46 H 0.122 0.878 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.095 0.905 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.877 -0.258 -14.759 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.211 4.211 4 N -0.323 5.323 5 C -0.389 4.389 6 H 0.098 0.902 7 C -0.166 4.166 8 N -0.541 5.541 9 Si 0.705 3.295 10 H -0.214 1.214 11 H -0.231 1.231 12 H -0.195 1.195 13 C 0.015 3.985 14 C -0.186 4.186 15 C -0.005 4.005 16 N -0.370 5.370 17 C 0.279 3.721 18 O -0.386 6.386 19 C -0.030 4.030 20 N -0.074 5.074 21 C -0.200 4.200 22 C -0.129 4.129 23 C -0.091 4.091 24 C -0.203 4.203 25 C -0.208 4.208 26 N -0.132 5.132 27 N -0.028 5.028 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.237 0.763 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.206 0.794 46 H 0.140 0.860 47 H 0.113 0.887 48 H 0.119 0.881 49 H 0.114 0.886 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.932 -1.800 -13.393 24.081 hybrid contribution 0.128 0.150 -0.885 0.907 sum 20.060 -1.650 -14.279 24.678 Atomic orbital electron populations 1.22119 0.97619 1.01400 0.99971 1.20399 0.92551 0.92224 0.88866 1.22155 1.00595 0.98347 1.00046 1.44235 1.52317 1.33099 1.02603 1.18664 1.42733 0.93129 0.84370 0.90157 1.25407 0.98445 0.97661 0.95079 1.69857 1.50262 1.35447 0.98561 0.87015 0.77876 0.86749 0.77906 1.21392 1.23146 1.19481 1.21075 0.87905 0.90368 0.99170 1.22438 0.97139 0.96090 1.02885 1.21564 0.78218 0.98543 1.02167 1.45988 1.06836 1.10014 1.74144 1.20184 0.86613 0.87013 0.78314 1.90847 1.83604 1.16480 1.47643 1.21919 0.88380 0.85059 1.07663 1.46737 1.24811 1.15607 1.20223 1.23221 0.96173 1.01654 0.98922 1.20984 1.01137 0.93499 0.97243 1.20005 0.88678 0.99419 1.00962 1.23004 0.94756 1.03695 0.98820 1.23031 1.03363 0.99829 0.94588 1.75102 1.04897 1.21953 1.11231 1.78503 1.15797 0.92075 1.16416 0.92064 0.94487 0.93473 0.93308 0.93512 0.94394 0.92457 0.92745 0.94123 0.92727 0.90382 0.92102 0.91685 0.91261 0.76276 0.85110 0.84685 0.79407 0.86014 0.88676 0.88081 0.88612 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.04 37.16 0.34 -2.41 16 2 C 0.17 3.03 3.36 -67.93 -0.23 2.80 16 3 C -0.15 -2.52 9.11 37.16 0.34 -2.18 16 4 N -0.60 -12.97 2.06 -165.66 -0.34 -13.31 16 5 C -0.26 -6.73 8.74 -15.06 -0.13 -6.87 16 6 H 0.08 2.26 7.17 -52.49 -0.38 1.88 16 7 C 0.03 0.95 5.31 -17.43 -0.09 0.86 16 8 N -0.90 -26.59 13.97 55.49 0.78 -25.82 16 9 Si 0.87 21.83 24.97 -169.99 -4.24 17.59 16 10 H -0.29 -7.01 6.66 56.52 0.38 -6.64 16 11 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.14 2.79 4.49 -4.04 -0.02 2.78 16 14 C -0.14 -2.31 5.65 -26.73 -0.15 -2.46 16 15 C 0.12 1.73 5.67 -4.04 -0.02 1.71 16 16 N -0.72 -7.99 5.56 -60.29 -0.33 -8.33 16 17 C 0.50 6.11 7.84 -10.98 -0.09 6.02 16 18 O -0.51 -9.12 15.68 5.56 0.09 -9.03 16 19 C 0.10 0.73 6.94 -5.19 -0.04 0.69 16 20 N -0.28 -3.20 3.20 -62.44 -0.20 -3.40 16 21 C -0.05 -0.46 10.89 -17.05 -0.19 -0.65 16 22 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 23 C -0.07 -0.58 6.33 -91.73 -0.58 -1.16 16 24 C -0.17 -1.06 10.23 -26.73 -0.27 -1.33 16 25 C -0.17 -0.91 10.03 -26.69 -0.27 -1.17 16 26 N -0.26 -4.08 12.41 33.29 0.41 -3.67 16 27 N -0.05 -0.76 12.13 60.35 0.73 -0.03 16 28 H 0.06 1.20 7.80 -51.93 -0.41 0.79 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.81 7.78 -51.93 -0.40 0.40 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 1.05 7.25 -51.93 -0.38 0.67 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.04 0.73 7.90 -51.93 -0.41 0.32 16 37 H 0.05 1.23 2.97 -51.93 -0.15 1.08 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 42 H 0.40 3.11 8.47 -40.82 -0.35 2.76 16 43 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.14 0.39 8.07 -51.93 -0.42 -0.02 16 45 H 0.19 0.89 7.45 -52.48 -0.39 0.50 16 46 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 49 H 0.10 0.41 7.23 -51.93 -0.38 0.03 16 50 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 407.63 15.07 6.14 6.14 Total: -1.00 -36.30 407.63 -7.25 -43.55 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.31 Total: 0.16 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.97 Total: -3.86 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 1.04 Total: -54.56 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.24 Total: 17.59 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.30 -7.25 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481352004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.113 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds