Wall clock time and date at job start Tue Mar 31 2020 19:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 N 1.46506 * 109.46869 * 119.99725 * 2 1 3 5 5 C 1.36933 * 120.00099 * 301.89875 * 4 2 1 6 6 H 1.07993 * 120.00341 * 324.86631 * 5 4 2 7 7 C 1.38817 * 120.00010 * 144.85921 * 5 4 2 8 8 N 1.31613 * 120.00250 * 157.16890 * 7 5 4 9 9 Si 1.86808 * 119.99687 * 337.17226 * 7 5 4 10 10 H 1.48499 * 109.47201 * 95.35176 * 9 7 5 11 11 H 1.48498 * 109.46973 * 215.35138 * 9 7 5 12 12 H 1.48503 * 109.47139 * 335.34818 * 9 7 5 13 13 C 1.46500 * 119.99700 * 121.90280 * 4 2 1 14 14 C 1.52997 * 109.47071 * 89.99750 * 13 4 2 15 15 C 1.52998 * 109.47120 * 179.97438 * 14 13 4 16 16 N 1.46506 * 109.47406 * 180.02562 * 15 14 13 17 17 C 1.34776 * 120.00004 * 179.97438 * 16 15 14 18 18 O 1.21277 * 120.00272 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99433 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.46787 * 180.02562 * 19 17 16 21 21 C 1.35314 * 125.87218 * 125.32403 * 20 19 17 22 22 C 1.35346 * 106.17620 * 180.11720 * 21 20 19 23 23 C 1.50703 * 126.75127 * 179.85500 * 22 21 20 24 24 C 1.52995 * 117.49805 * 84.70980 * 23 22 21 25 25 C 1.53005 * 60.03468 * 252.50047 * 24 23 22 26 26 N 1.33767 * 106.49886 * 359.59321 * 22 21 20 27 27 N 1.28637 * 108.88504 * 0.25947 * 26 22 21 28 28 H 1.09000 * 109.47673 * 305.33000 * 1 2 3 29 29 H 1.08997 * 109.47041 * 65.33404 * 1 2 3 30 30 H 1.09001 * 109.47238 * 185.32732 * 1 2 3 31 31 H 1.08996 * 109.47063 * 239.99908 * 2 1 3 32 32 H 1.08996 * 109.47240 * 175.18656 * 3 2 1 33 33 H 1.09003 * 109.47102 * 295.19067 * 3 2 1 34 34 H 1.09002 * 109.46704 * 55.18638 * 3 2 1 35 35 H 0.96999 * 119.99935 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47273 * 329.99901 * 13 4 2 37 37 H 1.08997 * 109.46908 * 209.99937 * 13 4 2 38 38 H 1.09002 * 109.46949 * 59.99952 * 14 13 4 39 39 H 1.08997 * 109.47407 * 299.99881 * 14 13 4 40 40 H 1.08998 * 109.47433 * 59.99661 * 15 14 13 41 41 H 1.09008 * 109.47326 * 300.00085 * 15 14 13 42 42 H 0.97004 * 119.99311 * 0.02562 * 16 15 14 43 43 H 1.09002 * 109.47279 * 60.00116 * 19 17 16 44 44 H 1.08997 * 109.47361 * 299.99871 * 19 17 16 45 45 H 1.08003 * 126.90826 * 359.97163 * 21 20 19 46 46 H 1.09001 * 115.56159 * 230.40462 * 23 22 21 47 47 H 1.09000 * 117.50374 * 359.97438 * 24 23 22 48 48 H 1.09008 * 117.49862 * 145.00480 * 24 23 22 49 49 H 1.08996 * 117.49614 * 107.50186 * 25 24 23 50 50 H 1.08994 * 117.49961 * 252.52834 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6557 -0.2458 2.4396 6 1 1.5322 0.8117 2.6200 7 6 1.4467 -1.1544 3.4681 8 7 1.5440 -0.7638 4.7211 9 14 1.0272 -2.9315 3.0735 10 1 2.2673 -3.7483 3.0906 11 1 0.0770 -3.4529 4.0886 12 1 0.4039 -3.0059 1.7277 13 6 2.8946 -1.8569 1.0623 14 6 4.3542 -1.3987 1.0432 15 6 5.2694 -2.6168 0.9039 16 7 6.6671 -2.1781 0.8863 17 6 7.6569 -3.0857 0.7709 18 8 7.3905 -4.2655 0.6822 19 6 9.0946 -2.6343 0.7534 20 7 9.9709 -3.8007 0.6199 21 6 10.9180 -3.9763 -0.3305 22 6 11.4817 -5.1816 -0.0829 23 6 12.5893 -5.8372 -0.8668 24 6 14.0276 -5.4538 -0.5133 25 6 13.4019 -4.9537 -1.8169 26 7 10.8664 -5.6739 0.9980 27 7 9.9766 -4.8319 1.3903 28 1 -0.3634 0.5943 0.8384 29 1 -0.3633 0.4289 -0.9339 30 1 -0.3634 -1.0232 0.0954 31 1 1.8933 -0.5138 -0.8899 32 1 3.1265 1.4437 0.0862 33 1 1.7487 1.9309 -0.9300 34 1 1.6079 1.9806 0.8438 35 1 1.3983 -1.3988 5.4398 36 1 2.6655 -2.3788 0.1331 37 1 2.7358 -2.5294 1.9053 38 1 4.5833 -0.8769 1.9724 39 1 4.5130 -0.7263 0.2002 40 1 5.0404 -3.1391 -0.0250 41 1 5.1106 -3.2890 1.7472 42 1 6.8802 -1.2345 0.9584 43 1 9.3229 -2.1123 1.6826 44 1 9.2542 -1.9621 -0.0896 45 1 11.1712 -3.2932 -1.1278 46 1 12.4035 -6.8668 -1.1725 47 1 14.1729 -4.7272 0.2861 48 1 14.7881 -6.2314 -0.5860 49 1 13.1355 -3.8984 -1.8747 50 1 13.7503 -5.4026 -2.7470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481352004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:03 Heat of formation + Delta-G solvation = 87.168231 kcal Electronic energy + Delta-G solvation = -28291.287157 eV Core-core repulsion = 24356.739167 eV Total energy + Delta-G solvation = -3934.547990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.30789 -40.86321 -38.80905 -38.16213 -36.54717 -35.47252 -34.32358 -33.58138 -31.71403 -31.27151 -29.61793 -27.76742 -26.93059 -25.11262 -25.04519 -23.70267 -22.94156 -22.67036 -21.84904 -21.16949 -21.15992 -18.76154 -18.59582 -18.29143 -17.41245 -17.03602 -16.87824 -16.72704 -16.45417 -16.20971 -15.63525 -15.54300 -15.34092 -14.99908 -14.82007 -14.67170 -14.20027 -14.03006 -13.81399 -13.53169 -13.33348 -13.22297 -12.89921 -12.67129 -12.59511 -12.56580 -12.36204 -12.29952 -12.17975 -12.12054 -12.01019 -11.85358 -11.69362 -11.44842 -11.37828 -11.19933 -11.16639 -10.86958 -10.56328 -10.24066 -9.99281 -8.74817 -8.16103 -5.48291 0.55711 1.22984 1.28088 1.38284 1.39707 1.47292 1.47967 2.07241 2.42257 2.88976 3.06781 3.25327 3.34212 3.52059 3.73088 3.89580 3.99086 4.00822 4.04645 4.06991 4.13998 4.29580 4.30685 4.37350 4.40871 4.49381 4.58978 4.71523 4.74921 4.77934 4.81782 4.86036 4.97490 4.98443 5.10015 5.16311 5.19603 5.21486 5.22757 5.24588 5.28604 5.31497 5.42706 5.53780 5.59111 5.66428 6.00421 6.25975 6.39144 7.05114 7.07475 7.50464 7.72173 8.11702 9.03873 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.001999 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.402212 B =14003.886324 C =14717.879906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 C -0.143 4.143 4 N -0.611 5.611 5 C -0.224 4.224 6 H 0.051 0.949 7 C -0.022 4.022 8 N -0.950 5.950 9 Si 0.927 3.073 10 H -0.285 1.285 11 H -0.320 1.320 12 H -0.259 1.259 13 C 0.131 3.869 14 C -0.124 4.124 15 C 0.129 3.871 16 N -0.703 5.703 17 C 0.494 3.506 18 O -0.574 6.574 19 C 0.097 3.903 20 N -0.280 5.280 21 C -0.029 4.029 22 C -0.010 4.010 23 C -0.098 4.098 24 C -0.168 4.168 25 C -0.142 4.142 26 N -0.312 5.312 27 N -0.108 5.108 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.257 0.743 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.423 0.577 43 H 0.159 0.841 44 H 0.196 0.804 45 H 0.241 0.759 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.940 1.690 -19.026 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.051 3.949 3 C -0.202 4.202 4 N -0.334 5.334 5 C -0.355 4.355 6 H 0.069 0.931 7 C -0.217 4.217 8 N -0.595 5.595 9 Si 0.759 3.241 10 H -0.214 1.214 11 H -0.250 1.250 12 H -0.183 1.183 13 C 0.005 3.995 14 C -0.164 4.164 15 C 0.004 3.996 16 N -0.357 5.357 17 C 0.279 3.721 18 O -0.452 6.452 19 C -0.027 4.027 20 N -0.074 5.074 21 C -0.179 4.179 22 C -0.148 4.148 23 C -0.119 4.119 24 C -0.205 4.205 25 C -0.179 4.179 26 N -0.178 5.178 27 N -0.087 5.087 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.261 0.739 43 H 0.176 0.824 44 H 0.213 0.787 45 H 0.257 0.743 46 H 0.131 0.869 47 H 0.107 0.893 48 H 0.128 0.872 49 H 0.133 0.867 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 22.001 0.184 -17.694 28.234 hybrid contribution -0.483 -0.353 0.303 0.671 sum 21.518 -0.169 -17.391 27.668 Atomic orbital electron populations 1.22085 0.97594 1.00213 1.00867 1.20714 0.92682 0.93194 0.88286 1.22042 1.00637 0.96912 1.00633 1.44403 1.53196 1.33542 1.02223 1.18523 1.39344 0.91662 0.85932 0.93106 1.25880 1.00132 1.00675 0.95051 1.69968 1.53751 1.36364 0.99429 0.86129 0.77134 0.83402 0.77418 1.21372 1.24962 1.18301 1.21175 0.89895 0.89418 0.99020 1.22114 0.94821 0.96553 1.02929 1.21205 0.80136 0.97303 1.00986 1.45745 1.05359 1.11121 1.73444 1.20986 0.88540 0.86054 0.76532 1.90836 1.84801 1.19186 1.50416 1.22351 0.84173 0.84324 1.11816 1.47048 1.25120 1.15399 1.19819 1.24001 0.94137 1.01327 0.98467 1.21616 1.01879 0.94652 0.96686 1.20079 0.88895 0.99816 1.03066 1.23058 0.93722 1.03943 0.99794 1.23190 1.00213 1.00272 0.94261 1.75010 1.06010 1.23384 1.13436 1.78422 1.17417 0.94001 1.18826 0.94681 0.90771 0.94998 0.90173 0.93008 0.90998 0.95253 0.93353 0.91645 0.95825 0.92637 0.89105 0.91237 0.94656 0.73901 0.82388 0.78661 0.74262 0.86914 0.89319 0.87210 0.86739 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.04 71.98 0.65 -4.38 16 2 C 0.16 5.23 3.36 44.99 0.15 5.38 16 3 C -0.14 -4.29 9.11 71.98 0.66 -3.64 16 4 N -0.61 -25.52 2.06 -678.03 -1.40 -26.92 16 5 C -0.22 -11.74 8.74 84.04 0.73 -11.01 16 6 H 0.05 2.95 7.17 -2.91 -0.02 2.93 16 7 C -0.02 -1.24 5.31 84.86 0.45 -0.79 16 8 N -0.95 -58.45 13.97 21.65 0.30 -58.15 16 9 Si 0.93 46.60 24.97 68.60 1.71 48.32 16 10 H -0.29 -14.13 6.66 99.48 0.66 -13.46 16 11 H -0.32 -16.76 7.11 99.48 0.71 -16.06 16 12 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.13 4.94 4.49 86.38 0.39 5.33 16 14 C -0.12 -3.70 5.65 30.59 0.17 -3.53 16 15 C 0.13 3.59 5.67 86.38 0.49 4.08 16 16 N -0.70 -13.97 5.56 -463.04 -2.57 -16.54 16 17 C 0.49 11.23 7.84 87.66 0.69 11.92 16 18 O -0.57 -20.58 15.68 -3.02 -0.05 -20.62 16 19 C 0.10 1.11 6.94 85.63 0.59 1.70 16 20 N -0.28 -5.83 3.20 -351.46 -1.12 -6.95 16 21 C -0.03 -0.45 10.89 83.49 0.91 0.46 16 22 C -0.01 -0.22 6.88 41.60 0.29 0.07 16 23 C -0.10 -1.52 6.33 -11.51 -0.07 -1.60 16 24 C -0.17 -1.88 10.23 30.59 0.31 -1.57 16 25 C -0.14 -1.02 10.03 30.62 0.31 -0.72 16 26 N -0.31 -9.99 12.41 -48.60 -0.60 -10.59 16 27 N -0.11 -3.46 12.13 37.02 0.45 -3.01 16 28 H 0.03 1.34 7.80 -2.39 -0.02 1.32 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 2.24 7.78 -2.39 -0.02 2.22 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.03 1.02 7.25 -2.39 -0.02 1.01 16 35 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.07 2.16 7.90 -2.39 -0.02 2.14 16 37 H 0.02 1.06 2.97 -2.39 -0.01 1.05 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.42 4.96 8.47 -92.70 -0.79 4.17 16 43 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.20 -0.17 8.07 -2.39 -0.02 -0.19 16 45 H 0.24 0.82 7.45 -2.91 -0.02 0.80 16 46 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 49 H 0.11 0.39 7.23 -2.39 -0.02 0.38 16 50 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -88.29 407.63 3.55 -84.75 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.11 Total: 8.00 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 6.72 Total: 1.72 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -4.95 Total: -122.17 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.05 Total: -20.62 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.71 Total: 48.32 kcal Total: -88.29 3.55 -84.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481352004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.915 kcal (2) G-P(sol) polarization free energy of solvation -88.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds