Wall clock time and date at job start Tue Mar 31 2020 18:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47301 * 2 1 4 4 C 1.53000 * 109.47427 * 239.99541 * 2 1 3 5 5 N 1.46503 * 109.46870 * 119.99514 * 2 1 3 6 6 C 1.34586 * 125.74879 * 75.00430 * 5 2 1 7 7 N 1.30871 * 107.62542 * 179.73218 * 6 5 2 8 8 C 1.34551 * 107.27022 * 0.38444 * 7 6 5 9 9 C 1.47871 * 126.04945 * 179.87786 * 8 7 6 10 10 O 1.21551 * 119.99842 * 179.69439 * 9 8 7 11 11 N 1.34771 * 119.99861 * 359.68226 * 9 8 7 12 12 C 1.46503 * 119.99932 * 180.02562 * 11 9 8 13 13 H 1.09003 * 110.05693 * 33.58861 * 12 11 9 14 14 C 1.54264 * 110.03108 * 272.16968 * 12 11 9 15 15 C 1.54894 * 104.19615 * 264.32339 * 14 12 11 16 16 C 1.55013 * 102.75068 * 322.04837 * 15 14 12 17 17 C 1.53876 * 110.03133 * 155.00135 * 12 11 9 18 18 H 1.09002 * 110.03428 * 0.02562 * 17 12 11 19 19 C 1.53001 * 110.03202 * 238.62062 * 17 12 11 20 20 N 1.46497 * 109.47153 * 175.69515 * 19 17 12 21 21 C 1.36942 * 120.00188 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99468 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99963 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99892 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99836 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47341 * 89.99997 * 25 23 21 27 27 H 1.48498 * 109.46805 * 210.00173 * 25 23 21 28 28 H 1.48506 * 109.47063 * 329.99960 * 25 23 21 29 29 N 1.28850 * 125.75097 * 254.97247 * 5 2 1 30 30 H 1.09001 * 109.47137 * 300.00504 * 1 2 3 31 31 H 1.09004 * 109.46527 * 60.00270 * 1 2 3 32 32 H 1.08995 * 109.46987 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46970 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46465 * 299.99233 * 3 2 1 35 35 H 1.08988 * 109.47316 * 59.99560 * 3 2 1 36 36 H 1.09003 * 109.47145 * 300.00227 * 4 2 1 37 37 H 1.08992 * 109.46878 * 60.00196 * 4 2 1 38 38 H 1.09000 * 109.47527 * 180.02562 * 4 2 1 39 39 H 1.07995 * 126.18591 * 359.95424 * 6 5 2 40 40 H 0.97000 * 120.00163 * 0.02562 * 11 9 8 41 41 H 1.08995 * 110.48853 * 23.00600 * 14 12 11 42 42 H 1.09005 * 110.48374 * 145.64662 * 14 12 11 43 43 H 1.08997 * 110.75486 * 80.37417 * 15 14 12 44 44 H 1.08996 * 110.75526 * 203.74525 * 15 14 12 45 45 H 1.08996 * 110.51029 * 279.29376 * 16 15 14 46 46 H 1.09002 * 110.51988 * 156.61519 * 16 15 14 47 47 H 1.09002 * 109.46606 * 295.68702 * 19 17 12 48 48 H 1.08993 * 109.47471 * 55.68980 * 19 17 12 49 49 H 0.97000 * 120.00158 * 359.97438 * 20 19 17 50 50 H 0.97001 * 119.99844 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 2.0139 -2.0220 1.3924 7 7 2.5330 -2.2505 2.5718 8 6 2.8500 -1.0573 3.1067 9 6 3.4618 -0.8337 4.4343 10 8 3.7080 0.2967 4.8073 11 7 3.7461 -1.8831 5.2306 12 6 4.3517 -1.6615 6.5461 13 1 3.9862 -0.7277 6.9734 14 6 5.8885 -1.6192 6.4199 15 6 6.3372 -3.0629 6.7568 16 6 5.3660 -3.4661 7.8957 17 6 4.0197 -2.8356 7.4837 18 1 3.4084 -3.5705 6.9598 19 6 3.2795 -2.3248 8.7215 20 7 2.8794 -3.4612 9.5548 21 6 2.1988 -3.2471 10.7237 22 1 1.9575 -2.2404 11.0313 23 6 1.8192 -4.3240 11.5131 24 7 2.1130 -5.5509 11.1378 25 14 0.8903 -4.0320 13.1072 26 1 -0.5699 -4.0345 12.8368 27 1 1.2164 -5.1102 14.0747 28 1 1.2859 -2.7190 13.6772 29 7 2.5248 -0.1255 2.2376 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6767 1.9564 0.8898 36 1 1.6767 -1.7490 -1.2491 37 1 1.6768 -0.2076 -2.1391 38 1 3.1301 -0.7217 -1.2489 39 1 1.6512 -2.7673 0.7001 40 1 3.5497 -2.7851 4.9328 41 1 6.1808 -1.3563 5.4033 42 1 6.3106 -0.9121 7.1341 43 1 6.2136 -3.7172 5.8939 44 1 7.3693 -3.0748 7.1073 45 1 5.7032 -3.0569 8.8480 46 1 5.2767 -4.5508 7.9557 47 1 3.9366 -1.6689 9.2927 48 1 2.3931 -1.7711 8.4121 49 1 3.0965 -4.3654 9.2787 50 1 1.8480 -6.3034 11.6896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482689080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:36 Heat of formation + Delta-G solvation = 53.042656 kcal Electronic energy + Delta-G solvation = -28925.815517 eV Core-core repulsion = 24989.787731 eV Total energy + Delta-G solvation = -3936.027786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.72355 -39.84738 -38.03133 -37.53309 -34.45612 -33.52445 -32.66257 -31.31427 -31.21479 -28.52665 -28.18400 -28.08296 -27.72301 -25.00036 -24.03599 -23.27269 -22.02435 -21.06796 -20.45376 -19.84328 -19.63026 -17.94670 -17.08660 -16.83085 -16.56437 -16.33494 -15.45319 -15.06261 -14.77866 -14.72622 -14.42790 -14.40366 -14.00815 -13.66856 -13.44257 -13.33395 -13.07759 -13.05298 -12.92919 -12.71576 -12.44836 -12.33129 -11.96251 -11.93468 -11.58380 -11.51348 -11.26310 -10.88347 -10.76844 -10.72685 -10.62415 -10.60919 -10.50274 -10.34465 -10.23266 -10.09110 -9.89339 -9.74307 -9.64520 -8.90072 -8.80249 -6.84919 -5.70620 -2.98451 1.27324 1.82168 1.93516 3.04642 3.37823 3.48138 3.53164 3.54931 3.75105 3.95731 4.01756 4.12462 4.41976 4.61306 4.63121 4.77304 4.81675 4.89999 4.90775 4.96148 5.03186 5.08606 5.17167 5.17709 5.30291 5.48759 5.55338 5.62683 5.65618 5.71296 5.75515 5.83526 5.90633 5.94574 5.98876 6.12133 6.13897 6.22867 6.29129 6.30359 6.36871 6.58027 6.66614 6.69814 6.86952 6.99416 7.49311 7.76656 7.88745 8.24465 8.48655 9.59857 10.18228 10.53511 11.52414 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.002250 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.806679 B =12442.094821 C =13347.842802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.294 5.294 6 C 0.188 3.812 7 N -0.482 5.482 8 C 0.141 3.859 9 C 0.614 3.386 10 O -0.522 6.522 11 N -0.696 5.696 12 C 0.147 3.853 13 H 0.095 0.905 14 C -0.130 4.130 15 C -0.126 4.126 16 C -0.111 4.111 17 C -0.103 4.103 18 H 0.079 0.921 19 C 0.161 3.839 20 N -0.730 5.730 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.282 1.282 29 N -0.248 5.248 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.221 0.779 40 H 0.409 0.591 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.023 0.977 48 H 0.018 0.982 49 H 0.384 0.616 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.902 8.715 -29.879 31.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.218 4.218 5 N -0.090 5.090 6 C -0.107 4.107 7 N -0.207 5.207 8 C -0.139 4.139 9 C 0.396 3.604 10 O -0.395 6.395 11 N -0.348 5.348 12 C 0.043 3.957 13 H 0.113 0.887 14 C -0.169 4.169 15 C -0.163 4.163 16 C -0.149 4.149 17 C -0.122 4.122 18 H 0.098 0.902 19 C 0.033 3.967 20 N -0.375 5.375 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 N -0.086 5.086 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.237 0.763 40 H 0.245 0.755 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.040 0.960 48 H 0.036 0.964 49 H 0.218 0.782 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.165 10.003 -29.152 30.896 hybrid contribution -0.865 -0.891 0.288 1.274 sum 1.300 9.112 -28.864 30.296 Atomic orbital electron populations 1.22274 0.91655 1.03733 1.04216 1.21173 0.95382 0.94356 0.80624 1.21998 1.02568 0.92239 1.03842 1.22261 1.02688 1.01195 0.95661 1.47793 1.41502 1.06277 1.13466 1.26308 1.01640 0.86436 0.96323 1.71295 1.16412 1.25952 1.07059 1.23824 1.06336 0.85638 0.98108 1.16290 0.77960 0.85127 0.81048 1.90820 1.52971 1.22523 1.73177 1.45897 1.62124 1.09333 1.17464 1.21755 0.92623 1.00242 0.81121 0.88656 1.22751 0.94816 0.97647 1.01678 1.22569 0.99168 0.95889 0.98697 1.22389 0.93340 1.00901 0.98264 1.22227 0.97637 0.95977 0.96384 0.90226 1.20736 0.95270 0.91329 0.89331 1.42325 1.67951 1.03776 1.23405 1.19244 1.27454 0.92770 0.97244 0.91234 1.24726 1.01904 0.95266 0.99241 1.69661 1.52118 0.97314 1.39244 0.86191 0.79686 0.76928 0.83425 1.21812 1.21825 1.20783 1.74288 1.13450 1.25443 0.95416 0.91143 0.89550 0.91266 0.91270 0.90294 0.90461 0.91075 0.89291 0.91140 0.76259 0.75495 0.91698 0.90589 0.91870 0.91744 0.90746 0.91205 0.95951 0.96397 0.78237 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 8.72 37.16 0.32 -0.33 16 2 C 0.17 0.90 1.23 -131.81 -0.16 0.74 16 3 C -0.15 -0.86 8.04 37.16 0.30 -0.56 16 4 C -0.16 -0.44 8.28 37.16 0.31 -0.13 16 5 N -0.29 -2.72 3.17 -49.83 -0.16 -2.88 16 6 C 0.19 1.66 11.71 -90.48 -1.06 0.60 16 7 N -0.48 -6.03 11.09 -12.36 -0.14 -6.17 16 8 C 0.14 2.06 7.96 -156.35 -1.24 0.82 16 9 C 0.61 9.98 7.83 -12.32 -0.10 9.89 16 10 O -0.52 -9.97 16.74 5.32 0.09 -9.88 16 11 N -0.70 -10.14 5.03 -53.65 -0.27 -10.41 16 12 C 0.15 2.23 2.90 -66.81 -0.19 2.03 16 13 H 0.10 1.61 7.10 -51.93 -0.37 1.24 16 14 C -0.13 -1.75 6.54 -25.07 -0.16 -1.91 16 15 C -0.13 -1.60 6.91 -24.67 -0.17 -1.77 16 16 C -0.11 -1.73 6.06 -25.01 -0.15 -1.88 16 17 C -0.10 -1.71 2.73 -89.50 -0.24 -1.96 16 18 H 0.08 1.35 7.62 -51.93 -0.40 0.95 16 19 C 0.16 3.38 5.31 -4.04 -0.02 3.35 16 20 N -0.73 -18.86 5.44 -59.91 -0.33 -19.19 16 21 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 22 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 24 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 25 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 29 N -0.25 -3.34 11.09 32.07 0.36 -2.98 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.60 8.02 -51.94 -0.42 0.18 16 36 H 0.07 0.11 7.34 -51.93 -0.38 -0.27 16 37 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.22 0.88 7.53 -52.49 -0.40 0.48 16 40 H 0.41 5.47 8.03 -40.82 -0.33 5.14 16 41 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.25 7.77 -51.93 -0.40 0.85 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.02 0.48 8.02 -51.93 -0.42 0.06 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.38 10.30 7.53 -40.82 -0.31 9.99 16 50 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 407.05 15.07 6.13 6.13 Total: -1.00 -35.94 407.05 -9.88 -45.82 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -8.45 Total: 8.17 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.82 Total: 1.41 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: 0.19 Total: -69.56 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.94 -9.88 -45.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482689080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.865 kcal (2) G-P(sol) polarization free energy of solvation -35.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds