Wall clock time and date at job start Tue Mar 31 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47483 * 2 1 4 4 C 1.53005 * 109.47008 * 240.00043 * 2 1 3 5 5 N 1.46506 * 109.47020 * 120.00161 * 2 1 3 6 6 C 1.34581 * 125.74539 * 74.99947 * 5 2 1 7 7 N 1.30878 * 107.62418 * 179.97438 * 6 5 2 8 8 C 1.34549 * 107.26548 * 359.97438 * 7 6 5 9 9 C 1.47871 * 126.04822 * 180.02562 * 8 7 6 10 10 O 1.21550 * 120.00192 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99676 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99895 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.05129 * 33.58621 * 12 11 9 14 14 C 1.53873 * 110.03394 * 272.16973 * 12 11 9 15 15 C 1.54264 * 106.59940 * 240.71488 * 14 12 11 16 16 C 1.54892 * 104.19740 * 23.61232 * 15 14 12 17 17 C 1.54268 * 110.03071 * 155.00406 * 12 11 9 18 18 H 1.09005 * 110.48085 * 214.48887 * 17 12 11 19 19 C 1.52997 * 110.48644 * 336.99519 * 17 12 11 20 20 N 1.46506 * 109.47289 * 185.00175 * 19 17 12 21 21 C 1.36930 * 120.00258 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99823 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00439 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00195 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99374 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47228 * 89.99744 * 25 23 21 27 27 H 1.48499 * 109.46828 * 209.99736 * 25 23 21 28 28 H 1.48502 * 109.47200 * 329.99649 * 25 23 21 29 29 N 1.28846 * 125.74818 * 255.31272 * 5 2 1 30 30 H 1.09004 * 109.46810 * 300.00309 * 1 2 3 31 31 H 1.08998 * 109.47380 * 59.99539 * 1 2 3 32 32 H 1.08998 * 109.47866 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47230 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46798 * 300.00223 * 3 2 1 35 35 H 1.08997 * 109.46702 * 60.00176 * 3 2 1 36 36 H 1.09002 * 109.47155 * 300.00040 * 4 2 1 37 37 H 1.09000 * 109.47194 * 59.99825 * 4 2 1 38 38 H 1.09000 * 109.47171 * 180.02562 * 4 2 1 39 39 H 1.08000 * 126.18963 * 359.97438 * 6 5 2 40 40 H 0.97003 * 120.00298 * 0.02562 * 11 9 8 41 41 H 1.09001 * 110.03240 * 359.97438 * 14 12 11 42 42 H 1.08992 * 110.03246 * 121.43120 * 14 12 11 43 43 H 1.09000 * 110.48603 * 142.28639 * 15 14 12 44 44 H 1.09000 * 110.49022 * 264.93172 * 15 14 12 45 45 H 1.09004 * 110.75814 * 203.74373 * 16 15 14 46 46 H 1.08992 * 110.76090 * 80.36989 * 16 15 14 47 47 H 1.09001 * 109.47289 * 65.00047 * 19 17 12 48 48 H 1.09004 * 109.47261 * 305.00303 * 19 17 12 49 49 H 0.97001 * 119.99251 * 0.02562 * 20 19 17 50 50 H 0.97000 * 119.99761 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 2.0138 -2.0221 1.3922 7 7 2.5282 -2.2505 2.5737 8 6 2.8507 -1.0577 3.1062 9 6 3.4628 -0.8341 4.4336 10 8 3.7088 0.2962 4.8069 11 7 3.7478 -1.8837 5.2295 12 6 4.3548 -1.6624 6.5444 13 1 3.9898 -0.7286 6.9721 14 6 5.8877 -1.6202 6.4171 15 6 6.4338 -2.7732 7.2843 16 6 5.2542 -3.7729 7.3738 17 6 4.0229 -2.8396 7.4845 18 1 3.8999 -2.4869 8.5086 19 6 2.7594 -3.5618 7.0128 20 7 2.3974 -4.5974 7.9838 21 6 1.2933 -5.3791 7.7717 22 1 0.6896 -5.2325 6.8882 23 6 0.9506 -6.3607 8.6915 24 7 -0.1108 -7.1117 8.4877 25 14 1.9954 -6.6147 10.2191 26 1 1.4832 -5.7566 11.3174 27 1 1.9297 -8.0395 10.6324 28 1 3.4039 -6.2500 9.9218 29 7 2.5192 -0.1254 2.2401 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2075 -2.1393 38 1 3.1299 -0.7217 -1.2491 39 1 1.6512 -2.7674 0.6997 40 1 3.5518 -2.7858 4.9315 41 1 6.1801 -1.7648 5.3770 42 1 6.2666 -0.6660 6.7830 43 1 7.2930 -3.2393 6.8020 44 1 6.7024 -2.4103 8.2764 45 1 5.3451 -4.3993 8.2612 46 1 5.1961 -4.3836 6.4729 47 1 2.9449 -4.0225 6.0425 48 1 1.9428 -2.8452 6.9245 49 1 2.9399 -4.7293 8.7771 50 1 -0.3500 -7.7978 9.1303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482689083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:44 Heat of formation + Delta-G solvation = 61.923529 kcal Electronic energy + Delta-G solvation = -29456.803486 eV Core-core repulsion = 25521.160803 eV Total energy + Delta-G solvation = -3935.642683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.62341 -39.95283 -38.04541 -37.49018 -34.51937 -33.59868 -32.59334 -31.51318 -31.14140 -29.00479 -28.12060 -28.02663 -27.75809 -24.88453 -24.22680 -23.17951 -21.95535 -20.82862 -20.33763 -20.31704 -19.28912 -18.12912 -17.47864 -16.80509 -16.72632 -16.06686 -15.21186 -14.96843 -14.93862 -14.68088 -14.51121 -14.30744 -14.16403 -13.80202 -13.61560 -13.26356 -13.15515 -12.98965 -12.85719 -12.60468 -12.38040 -12.37008 -12.23328 -11.87857 -11.74489 -11.49912 -11.47375 -10.94883 -10.91194 -10.84896 -10.51808 -10.49926 -10.44629 -10.38850 -10.34257 -10.11236 -10.03316 -9.64838 -9.54132 -8.91406 -8.84630 -7.18179 -5.72312 -3.07290 1.35341 1.91096 2.03843 3.09959 3.40524 3.43379 3.44146 3.48316 3.83686 4.05868 4.10014 4.20449 4.50335 4.59329 4.63307 4.73994 4.78778 4.85851 4.97365 5.03614 5.04594 5.11353 5.15618 5.23522 5.36842 5.38589 5.51855 5.57252 5.62138 5.63253 5.71990 5.73222 5.80782 5.86727 5.91797 5.93213 6.04001 6.09036 6.23047 6.24915 6.38341 6.42153 6.48000 6.65541 6.73109 6.78337 7.54840 7.97482 8.04758 8.28679 8.46767 9.26229 9.98437 10.18678 11.46306 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.002880 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.797986 B = 9718.426488 C =11391.344938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.167 3.833 3 C -0.148 4.148 4 C -0.160 4.160 5 N -0.294 5.294 6 C 0.190 3.810 7 N -0.478 5.478 8 C 0.139 3.861 9 C 0.616 3.384 10 O -0.527 6.527 11 N -0.697 5.697 12 C 0.150 3.850 13 H 0.093 0.907 14 C -0.132 4.132 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.111 4.111 18 H 0.089 0.911 19 C 0.167 3.833 20 N -0.753 5.753 21 C -0.241 4.241 22 H 0.090 0.910 23 C 0.003 3.997 24 N -0.936 5.936 25 Si 0.884 3.116 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.276 1.276 29 N -0.249 5.249 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.222 0.778 40 H 0.415 0.585 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.027 0.973 48 H 0.029 0.971 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.030 14.983 -20.335 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.218 4.218 5 N -0.091 5.091 6 C -0.105 4.105 7 N -0.203 5.203 8 C -0.140 4.140 9 C 0.398 3.602 10 O -0.400 6.400 11 N -0.351 5.351 12 C 0.046 3.954 13 H 0.111 0.889 14 C -0.171 4.171 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.131 4.131 18 H 0.107 0.893 19 C 0.039 3.961 20 N -0.399 5.399 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.584 5.584 25 Si 0.715 3.285 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.202 1.202 29 N -0.087 5.087 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.238 0.762 40 H 0.254 0.746 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.045 0.955 48 H 0.047 0.953 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.152 16.074 -19.871 26.827 hybrid contribution 0.272 -0.977 0.630 1.194 sum 8.423 15.097 -19.241 25.867 Atomic orbital electron populations 1.22277 0.91663 1.03842 1.04146 1.21159 0.95396 0.94278 0.80677 1.21993 1.02502 0.92316 1.03776 1.22262 1.02646 1.01283 0.95626 1.47788 1.41738 1.06285 1.13282 1.26344 1.01619 0.86368 0.96215 1.71341 1.16168 1.25835 1.06914 1.23763 1.06396 0.85720 0.98154 1.16283 0.77791 0.85016 0.81086 1.90796 1.53325 1.22597 1.73323 1.45973 1.61967 1.09905 1.17227 1.21664 0.92423 0.99590 0.81771 0.88911 1.22588 0.94669 0.99085 1.00724 1.22379 0.98086 0.96053 0.99683 1.22559 0.93153 0.97053 1.02622 1.22540 0.96502 0.94631 0.99380 0.89298 1.20579 0.92579 0.90300 0.92607 1.42681 1.32019 1.40545 1.24606 1.19069 1.01189 1.10093 1.06700 0.89243 1.24664 0.97687 0.98378 0.98517 1.69703 1.27070 1.24322 1.37289 0.86545 0.80392 0.77168 0.84429 1.21163 1.21823 1.20248 1.74259 1.13612 1.25419 0.95454 0.91159 0.89605 0.91166 0.91322 0.90351 0.90500 0.90999 0.89336 0.91170 0.76192 0.74617 0.91351 0.91212 0.91781 0.91633 0.91202 0.90995 0.95502 0.95339 0.80653 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 8.72 37.16 0.32 -0.50 16 2 C 0.17 1.05 1.23 -131.82 -0.16 0.89 16 3 C -0.15 -0.95 8.05 37.16 0.30 -0.65 16 4 C -0.16 -0.58 8.28 37.16 0.31 -0.28 16 5 N -0.29 -3.03 3.16 -49.83 -0.16 -3.19 16 6 C 0.19 1.96 11.71 -90.48 -1.06 0.90 16 7 N -0.48 -6.78 11.09 -12.36 -0.14 -6.92 16 8 C 0.14 2.18 7.96 -156.35 -1.24 0.94 16 9 C 0.62 10.31 7.83 -12.32 -0.10 10.21 16 10 O -0.53 -10.00 16.74 5.32 0.09 -9.91 16 11 N -0.70 -10.59 4.34 -53.65 -0.23 -10.82 16 12 C 0.15 2.16 3.12 -66.81 -0.21 1.96 16 13 H 0.09 1.40 7.56 -51.93 -0.39 1.01 16 14 C -0.13 -1.64 6.59 -25.61 -0.17 -1.81 16 15 C -0.12 -1.45 6.83 -25.07 -0.17 -1.63 16 16 C -0.12 -1.65 6.19 -24.74 -0.15 -1.81 16 17 C -0.11 -1.73 2.84 -88.96 -0.25 -1.98 16 18 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 19 C 0.17 3.27 4.73 -4.04 -0.02 3.25 16 20 N -0.75 -18.03 5.30 -59.90 -0.32 -18.35 16 21 C -0.24 -6.92 10.47 -15.06 -0.16 -7.07 16 22 H 0.09 2.77 8.06 -52.48 -0.42 2.34 16 23 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 24 N -0.94 -29.76 13.97 55.49 0.78 -28.99 16 25 Si 0.88 22.33 27.74 -169.99 -4.71 17.61 16 26 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 29 N -0.25 -3.55 11.09 32.07 0.36 -3.20 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.64 8.02 -51.93 -0.42 0.22 16 36 H 0.07 0.19 7.34 -51.93 -0.38 -0.19 16 37 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.22 1.26 7.53 -52.49 -0.40 0.86 16 40 H 0.41 6.34 6.27 -40.82 -0.26 6.08 16 41 H 0.07 0.87 7.92 -51.93 -0.41 0.46 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 1.06 7.96 -51.93 -0.41 0.64 16 47 H 0.03 0.53 6.41 -51.93 -0.33 0.20 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.36 8.39 5.50 -40.82 -0.22 8.16 16 50 H 0.26 7.82 8.31 -40.82 -0.34 7.49 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -36.47 400.95 -9.47 -45.93 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.31 Total: 9.38 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -2.86 Total: 2.42 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: 0.29 Total: -71.47 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.47 -9.47 -45.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482689083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.858 kcal (2) G-P(sol) polarization free energy of solvation -36.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds