Wall clock time and date at job start Tue Mar 31 2020 18:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47483 * 2 1 4 4 C 1.53005 * 109.47008 * 240.00043 * 2 1 3 5 5 N 1.46506 * 109.47020 * 120.00161 * 2 1 3 6 6 C 1.34581 * 125.74539 * 74.99947 * 5 2 1 7 7 N 1.30878 * 107.62418 * 179.97438 * 6 5 2 8 8 C 1.34549 * 107.26548 * 359.97438 * 7 6 5 9 9 C 1.47871 * 126.04822 * 180.02562 * 8 7 6 10 10 O 1.21550 * 120.00192 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99676 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99895 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.05129 * 33.58621 * 12 11 9 14 14 C 1.53873 * 110.03394 * 272.16973 * 12 11 9 15 15 C 1.54264 * 106.59940 * 240.71488 * 14 12 11 16 16 C 1.54892 * 104.19740 * 23.61232 * 15 14 12 17 17 C 1.54268 * 110.03071 * 155.00406 * 12 11 9 18 18 H 1.09005 * 110.48085 * 214.48887 * 17 12 11 19 19 C 1.52997 * 110.48644 * 336.99519 * 17 12 11 20 20 N 1.46506 * 109.47289 * 185.00175 * 19 17 12 21 21 C 1.36930 * 120.00258 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99823 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00439 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00195 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99374 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47228 * 89.99744 * 25 23 21 27 27 H 1.48499 * 109.46828 * 209.99736 * 25 23 21 28 28 H 1.48502 * 109.47200 * 329.99649 * 25 23 21 29 29 N 1.28846 * 125.74818 * 255.31272 * 5 2 1 30 30 H 1.09004 * 109.46810 * 300.00309 * 1 2 3 31 31 H 1.08998 * 109.47380 * 59.99539 * 1 2 3 32 32 H 1.08998 * 109.47866 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47230 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46798 * 300.00223 * 3 2 1 35 35 H 1.08997 * 109.46702 * 60.00176 * 3 2 1 36 36 H 1.09002 * 109.47155 * 300.00040 * 4 2 1 37 37 H 1.09000 * 109.47194 * 59.99825 * 4 2 1 38 38 H 1.09000 * 109.47171 * 180.02562 * 4 2 1 39 39 H 1.08000 * 126.18963 * 359.97438 * 6 5 2 40 40 H 0.97003 * 120.00298 * 0.02562 * 11 9 8 41 41 H 1.09001 * 110.03240 * 359.97438 * 14 12 11 42 42 H 1.08992 * 110.03246 * 121.43120 * 14 12 11 43 43 H 1.09000 * 110.48603 * 142.28639 * 15 14 12 44 44 H 1.09000 * 110.49022 * 264.93172 * 15 14 12 45 45 H 1.09004 * 110.75814 * 203.74373 * 16 15 14 46 46 H 1.08992 * 110.76090 * 80.36989 * 16 15 14 47 47 H 1.09001 * 109.47289 * 65.00047 * 19 17 12 48 48 H 1.09004 * 109.47261 * 305.00303 * 19 17 12 49 49 H 0.97001 * 119.99251 * 0.02562 * 20 19 17 50 50 H 0.97000 * 119.99761 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 2.0138 -2.0221 1.3922 7 7 2.5282 -2.2505 2.5737 8 6 2.8507 -1.0577 3.1062 9 6 3.4628 -0.8341 4.4336 10 8 3.7088 0.2962 4.8069 11 7 3.7478 -1.8837 5.2295 12 6 4.3548 -1.6624 6.5444 13 1 3.9898 -0.7286 6.9721 14 6 5.8877 -1.6202 6.4171 15 6 6.4338 -2.7732 7.2843 16 6 5.2542 -3.7729 7.3738 17 6 4.0229 -2.8396 7.4845 18 1 3.8999 -2.4869 8.5086 19 6 2.7594 -3.5618 7.0128 20 7 2.3974 -4.5974 7.9838 21 6 1.2933 -5.3791 7.7717 22 1 0.6896 -5.2325 6.8882 23 6 0.9506 -6.3607 8.6915 24 7 -0.1108 -7.1117 8.4877 25 14 1.9954 -6.6147 10.2191 26 1 1.4832 -5.7566 11.3174 27 1 1.9297 -8.0395 10.6324 28 1 3.4039 -6.2500 9.9218 29 7 2.5192 -0.1254 2.2401 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2075 -2.1393 38 1 3.1299 -0.7217 -1.2491 39 1 1.6512 -2.7674 0.6997 40 1 3.5518 -2.7858 4.9315 41 1 6.1801 -1.7648 5.3770 42 1 6.2666 -0.6660 6.7830 43 1 7.2930 -3.2393 6.8020 44 1 6.7024 -2.4103 8.2764 45 1 5.3451 -4.3993 8.2612 46 1 5.1961 -4.3836 6.4729 47 1 2.9449 -4.0225 6.0425 48 1 1.9428 -2.8452 6.9245 49 1 2.9399 -4.7293 8.7771 50 1 -0.3500 -7.7978 9.1303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482689083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:43 Heat of formation + Delta-G solvation = 37.799876 kcal Electronic energy + Delta-G solvation = -29457.849566 eV Core-core repulsion = 25521.160803 eV Total energy + Delta-G solvation = -3936.688763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.55596 -41.20305 -39.22620 -38.20629 -36.41434 -34.78308 -33.57812 -33.54803 -32.06019 -30.60573 -29.01628 -28.43360 -28.40631 -26.43388 -25.44743 -24.04600 -23.82407 -21.92930 -21.42543 -21.12779 -20.71073 -19.66277 -18.95395 -17.69130 -17.63023 -17.22184 -16.60576 -16.25251 -16.16998 -15.90836 -15.51280 -15.41342 -15.11607 -14.97493 -14.91829 -14.68240 -14.52806 -13.80812 -13.74416 -13.54898 -13.31595 -13.24736 -13.04915 -12.90812 -12.78183 -12.72160 -12.40190 -12.30056 -12.05901 -12.01321 -11.98064 -11.83896 -11.73466 -11.61662 -11.49460 -11.46269 -11.43980 -11.38300 -10.95303 -10.61620 -10.13221 -9.29827 -8.01636 -5.35579 0.29022 1.07227 1.15290 1.39010 1.43269 1.50581 1.99711 2.23697 2.49922 3.06208 3.23655 3.29507 3.36649 3.64462 3.64824 3.74679 3.77708 3.78458 3.86264 4.00705 4.36593 4.45707 4.49845 4.51416 4.56109 4.57446 4.60241 4.61669 4.67592 4.76762 4.77566 4.79360 4.83028 4.91676 5.01717 5.08706 5.09866 5.15875 5.18914 5.20365 5.24277 5.31475 5.36968 5.46142 5.50931 5.66343 5.76132 6.21720 6.30831 6.89861 7.08375 7.09664 7.83165 8.05045 9.20072 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.002880 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.797986 B = 9718.426488 C =11391.344938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 C -0.147 4.147 4 C -0.155 4.155 5 N -0.285 5.285 6 C 0.199 3.801 7 N -0.508 5.508 8 C 0.110 3.890 9 C 0.614 3.386 10 O -0.559 6.559 11 N -0.691 5.691 12 C 0.151 3.849 13 H 0.084 0.916 14 C -0.125 4.125 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.103 4.103 18 H 0.097 0.903 19 C 0.169 3.831 20 N -0.752 5.752 21 C -0.235 4.235 22 H 0.052 0.948 23 C -0.064 4.064 24 N -0.985 5.985 25 Si 0.957 3.043 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.245 1.245 29 N -0.268 5.268 30 H 0.044 0.956 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.059 0.941 39 H 0.267 0.733 40 H 0.414 0.586 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.027 0.973 48 H 0.010 0.990 49 H 0.368 0.632 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.718 15.147 -21.324 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.076 3.924 3 C -0.205 4.205 4 C -0.213 4.213 5 N -0.082 5.082 6 C -0.096 4.096 7 N -0.234 5.234 8 C -0.169 4.169 9 C 0.397 3.603 10 O -0.435 6.435 11 N -0.344 5.344 12 C 0.046 3.954 13 H 0.102 0.898 14 C -0.164 4.164 15 C -0.149 4.149 16 C -0.153 4.153 17 C -0.122 4.122 18 H 0.115 0.885 19 C 0.042 3.958 20 N -0.398 5.398 21 C -0.366 4.366 22 H 0.070 0.930 23 C -0.256 4.256 24 N -0.635 5.635 25 Si 0.783 3.217 26 H -0.206 1.206 27 H -0.222 1.222 28 H -0.169 1.169 29 N -0.109 5.109 30 H 0.063 0.937 31 H 0.134 0.866 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.282 0.718 40 H 0.253 0.747 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.045 0.955 48 H 0.028 0.972 49 H 0.202 0.798 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.873 16.268 -20.889 28.257 hybrid contribution -0.394 -0.964 0.733 1.274 sum 9.479 15.304 -20.156 27.024 Atomic orbital electron populations 1.22303 0.90420 1.04466 1.04393 1.21692 0.96307 0.94242 0.80198 1.22008 1.01572 0.92755 1.04120 1.22302 1.02040 1.02206 0.94754 1.48225 1.40211 1.06619 1.13115 1.27154 0.99760 0.87079 0.95571 1.71277 1.17619 1.25759 1.08763 1.23585 1.08277 0.86693 0.98325 1.16506 0.77422 0.84721 0.81689 1.90755 1.54912 1.23591 1.74251 1.45968 1.61579 1.09531 1.17343 1.21729 0.94008 0.98585 0.81090 0.89762 1.22532 0.92698 1.00203 1.00929 1.22324 0.97341 0.94689 1.00529 1.22547 0.93367 0.97208 1.02225 1.22453 0.94992 0.94940 0.99804 0.88526 1.20637 0.94079 0.89121 0.91930 1.42617 1.30777 1.40677 1.25680 1.19008 1.01925 1.10439 1.05248 0.93039 1.25538 0.99320 0.98284 1.02413 1.69894 1.29408 1.25374 1.38859 0.85381 0.80029 0.76732 0.79510 1.20611 1.22192 1.16904 1.74184 1.14093 1.26121 0.96459 0.93662 0.86581 0.90357 0.92745 0.87055 0.93068 0.89435 0.86613 0.92158 0.71758 0.74741 0.91672 0.90140 0.90127 0.90003 0.91268 0.91740 0.95525 0.97177 0.79818 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.72 71.98 0.63 -0.67 16 2 C 0.16 1.71 1.23 3.60 0.00 1.72 16 3 C -0.15 -1.78 8.05 71.98 0.58 -1.20 16 4 C -0.16 -0.66 8.28 71.98 0.60 -0.06 16 5 N -0.28 -5.75 3.16 -311.57 -0.99 -6.74 16 6 C 0.20 3.91 11.71 180.30 2.11 6.02 16 7 N -0.51 -14.66 11.09 -193.03 -2.14 -16.81 16 8 C 0.11 3.58 7.96 137.13 1.09 4.67 16 9 C 0.61 21.46 7.83 86.79 0.68 22.14 16 10 O -0.56 -22.16 16.74 -3.87 -0.06 -22.23 16 11 N -0.69 -21.62 4.34 -441.94 -1.92 -23.54 16 12 C 0.15 4.29 3.12 45.71 0.14 4.43 16 13 H 0.08 2.56 7.56 -2.39 -0.02 2.55 16 14 C -0.13 -2.91 6.59 31.32 0.21 -2.70 16 15 C -0.11 -2.27 6.83 31.67 0.22 -2.05 16 16 C -0.12 -3.05 6.19 31.89 0.20 -2.85 16 17 C -0.10 -3.08 2.84 -9.72 -0.03 -3.11 16 18 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 19 C 0.17 6.68 4.73 86.38 0.41 7.09 16 20 N -0.75 -35.77 5.30 -343.44 -1.82 -37.59 16 21 C -0.24 -13.80 10.47 84.04 0.88 -12.92 16 22 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 23 C -0.06 -3.85 5.50 84.86 0.47 -3.39 16 24 N -0.98 -64.17 13.97 21.65 0.30 -63.87 16 25 Si 0.96 45.72 27.74 68.60 1.90 47.63 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 28 H -0.24 -10.33 6.52 99.48 0.65 -9.68 16 29 N -0.27 -7.93 11.09 -52.44 -0.58 -8.51 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.89 8.02 -2.39 -0.02 0.87 16 36 H 0.09 0.13 7.34 -2.39 -0.02 0.11 16 37 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.27 2.27 7.53 -2.91 -0.02 2.25 16 40 H 0.41 13.08 6.27 -92.71 -0.58 12.50 16 41 H 0.06 1.58 7.92 -2.39 -0.02 1.56 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.06 1.80 7.96 -2.39 -0.02 1.78 16 47 H 0.03 1.07 6.41 -2.39 -0.02 1.06 16 48 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 49 H 0.37 16.40 5.50 -92.71 -0.51 15.89 16 50 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -83.21 400.95 2.67 -80.54 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.21 Total: 34.02 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 8.18 Total: 17.10 kcal Atomic # 7 Polarization: -149.92 SS G_CDS: -7.14 Total: -157.06 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.06 Total: -22.23 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.63 kcal Total: -83.21 2.67 -80.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482689083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.341 kcal (2) G-P(sol) polarization free energy of solvation -83.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds