Wall clock time and date at job start Tue Mar 31 2020 18:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46506 * 119.99924 * 2 1 4 4 C 1.38399 * 120.00025 * 179.97438 * 2 1 3 5 5 C 1.39892 * 119.99616 * 5.00016 * 4 2 1 6 6 N 1.31454 * 120.01036 * 179.97438 * 5 4 2 7 7 C 1.33283 * 120.01224 * 0.02764 * 6 5 4 8 8 C 1.47812 * 120.00147 * 180.02562 * 7 6 5 9 9 O 1.21564 * 120.00035 * 175.24736 * 8 7 6 10 10 N 1.34783 * 120.00249 * 354.97160 * 8 7 6 11 11 C 1.46501 * 119.99583 * 355.39266 * 10 8 7 12 12 C 1.46500 * 119.99869 * 175.40146 * 10 8 7 13 13 C 1.52991 * 109.47480 * 89.99787 * 12 10 8 14 14 C 1.52998 * 109.46993 * 299.99595 * 13 12 10 15 15 C 1.53002 * 109.47309 * 59.99694 * 13 12 10 16 16 C 1.53004 * 109.47181 * 179.97438 * 13 12 10 17 17 N 1.46504 * 109.47391 * 180.02562 * 16 13 12 18 18 C 1.36934 * 119.99927 * 180.02562 * 17 16 13 19 19 H 1.08000 * 120.00356 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99428 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00377 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99445 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47673 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47207 * 120.00101 * 22 20 18 25 25 H 1.48496 * 109.47210 * 239.99556 * 22 20 18 26 26 C 1.39399 * 119.99311 * 0.27122 * 7 6 5 27 27 N 1.32050 * 119.98741 * 359.43643 * 26 7 6 28 28 H 1.08994 * 109.47385 * 240.00037 * 1 2 3 29 29 H 1.09006 * 109.47398 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47283 * 120.00231 * 1 2 3 31 31 H 1.09002 * 109.46929 * 269.99392 * 3 2 1 32 32 H 1.08999 * 109.47106 * 29.99808 * 3 2 1 33 33 H 1.08999 * 109.46734 * 149.99667 * 3 2 1 34 34 H 1.07994 * 119.99610 * 0.02562 * 5 4 2 35 35 H 1.08996 * 109.46996 * 64.57048 * 11 10 8 36 36 H 1.09002 * 109.46596 * 184.56976 * 11 10 8 37 37 H 1.08998 * 109.47258 * 304.56476 * 11 10 8 38 38 H 1.09005 * 109.46424 * 209.99590 * 12 10 8 39 39 H 1.09003 * 109.47025 * 329.99164 * 12 10 8 40 40 H 1.08996 * 109.47634 * 60.00417 * 14 13 12 41 41 H 1.09003 * 109.47230 * 180.02562 * 14 13 12 42 42 H 1.08996 * 109.47111 * 299.99921 * 14 13 12 43 43 H 1.08999 * 109.46982 * 60.00094 * 15 13 12 44 44 H 1.08999 * 109.47213 * 179.97438 * 15 13 12 45 45 H 1.09002 * 109.47341 * 299.99734 * 15 13 12 46 46 H 1.09005 * 109.46738 * 299.99812 * 16 13 12 47 47 H 1.08996 * 109.47328 * 59.99831 * 16 13 12 48 48 H 0.97003 * 119.99329 * 359.97438 * 17 16 13 49 49 H 0.97001 * 119.99917 * 180.02562 * 21 20 18 50 50 H 1.08003 * 120.00924 * 179.72360 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1569 -1.1986 0.0005 5 6 1.4614 -2.4078 -0.1045 6 7 2.1184 -3.5463 -0.1045 7 6 3.4475 -3.5491 -0.0039 8 6 4.1860 -4.8294 -0.0046 9 8 5.4017 -4.8299 0.0000 10 7 3.5118 -5.9965 -0.0046 11 6 2.0503 -5.9980 0.0980 12 6 4.2403 -7.2634 -0.1069 13 6 4.5947 -7.7626 1.2952 14 6 5.4719 -6.7254 1.9992 15 6 3.3112 -7.9760 2.1002 16 6 5.3551 -9.0861 1.1882 17 7 5.6939 -9.5645 2.5308 18 6 6.3808 -10.7389 2.6860 19 1 6.6724 -11.3127 1.8188 20 6 6.7024 -11.1919 3.9582 21 7 6.3474 -10.4924 5.0152 22 14 7.6387 -12.7942 4.1700 23 1 7.9171 -13.3850 2.8363 24 1 8.9204 -12.5296 4.8720 25 1 6.8228 -13.7423 4.9703 26 6 4.1404 -2.3446 0.1070 27 7 3.4807 -1.2007 0.1012 28 1 -0.3634 -0.5138 0.8899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5139 -0.8900 31 1 2.3792 1.5834 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1498 1.1384 0.5139 34 1 0.3846 -2.4059 -0.1864 35 1 1.6238 -5.5199 -0.7838 36 1 1.6919 -7.0253 0.1636 37 1 1.7481 -5.4500 0.9904 38 1 3.6153 -8.0023 -0.6085 39 1 5.1547 -7.1113 -0.6805 40 1 4.9300 -5.7828 2.0755 41 1 5.7248 -7.0813 2.9980 42 1 6.3862 -6.5735 1.4257 43 1 2.6864 -8.7149 1.5986 44 1 3.5637 -8.3321 3.0989 45 1 2.7692 -7.0334 2.1765 46 1 4.7297 -9.8248 0.6868 47 1 6.2694 -8.9345 0.6146 48 1 5.4323 -9.0489 3.3097 49 1 6.5725 -10.8088 5.9041 50 1 5.2170 -2.3468 0.1931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485251397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:15 Heat of formation + Delta-G solvation = 56.509568 kcal Electronic energy + Delta-G solvation = -29476.502264 eV Core-core repulsion = 25540.624814 eV Total energy + Delta-G solvation = -3935.877450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53877 -39.82918 -37.58396 -36.98456 -35.21366 -34.22939 -32.94080 -31.21541 -30.07475 -28.95932 -27.69212 -27.11653 -26.42606 -25.60883 -25.05298 -24.42568 -22.94060 -22.21357 -20.12027 -18.36711 -18.06776 -17.88562 -17.15834 -17.08045 -16.18328 -15.93751 -15.59119 -15.28593 -14.92020 -14.69628 -14.39791 -14.26129 -13.90618 -13.54499 -13.32555 -13.20175 -13.12333 -12.97778 -12.90714 -12.66399 -12.56437 -12.45648 -12.21053 -12.09002 -11.59800 -11.28159 -11.08525 -11.03311 -10.89363 -10.76483 -10.58683 -10.42297 -10.25002 -10.11425 -10.04060 -9.76912 -9.59333 -9.20708 -8.77884 -8.43399 -8.14554 -6.79386 -5.67292 -2.94238 0.41442 0.86600 2.24459 2.75170 3.06237 3.49325 3.54800 3.57155 3.67053 3.88770 3.95158 4.06878 4.44901 4.64027 4.68417 4.70701 4.74458 4.92937 5.03886 5.07935 5.20908 5.24912 5.30404 5.33851 5.36443 5.56900 5.65454 5.74131 5.76660 5.85225 6.03585 6.04404 6.08682 6.17156 6.23768 6.30608 6.42435 6.55603 6.59342 6.67715 6.75825 6.85739 6.90640 7.06050 7.06483 7.12064 7.41123 7.56453 7.79553 8.24589 8.52388 9.63381 10.23763 10.58567 11.56014 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.002132 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.258095 B =13127.719318 C =13264.469756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.601 5.601 3 C 0.092 3.908 4 C 0.369 3.631 5 C -0.011 4.011 6 N -0.368 5.368 7 C -0.043 4.043 8 C 0.577 3.423 9 O -0.528 6.528 10 N -0.592 5.592 11 C 0.099 3.901 12 C 0.127 3.873 13 C -0.086 4.086 14 C -0.121 4.121 15 C -0.134 4.134 16 C 0.165 3.835 17 N -0.728 5.728 18 C -0.233 4.233 19 H 0.070 0.930 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.171 3.829 27 N -0.508 5.508 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.168 0.832 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.017 0.983 47 H 0.020 0.980 48 H 0.385 0.615 49 H 0.253 0.747 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.657 24.498 -13.198 32.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.313 5.313 3 C -0.051 4.051 4 C 0.129 3.871 5 C -0.183 4.183 6 N -0.084 5.084 7 C -0.184 4.184 8 C 0.364 3.636 9 O -0.404 6.404 10 N -0.323 5.323 11 C -0.044 4.044 12 C 0.005 3.995 13 C -0.087 4.087 14 C -0.179 4.179 15 C -0.192 4.192 16 C 0.037 3.963 17 N -0.373 5.373 18 C -0.364 4.364 19 H 0.088 0.912 20 C -0.213 4.213 21 N -0.584 5.584 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.009 3.991 27 N -0.230 5.230 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.185 0.815 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.037 0.963 48 H 0.220 0.780 49 H 0.063 0.937 50 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.997 24.479 -13.248 32.104 hybrid contribution 0.230 -0.630 0.536 0.858 sum -15.767 23.850 -12.712 31.289 Atomic orbital electron populations 1.21839 0.77575 1.03737 1.02157 1.46211 1.05680 1.03106 1.76304 1.21745 0.98028 0.83503 1.01836 1.19628 0.89879 0.87534 0.90081 1.23231 1.01363 0.86809 1.06861 1.68665 1.07745 1.27655 1.04322 1.21750 0.90639 0.95778 1.10183 1.17452 0.86459 0.82502 0.77237 1.90828 1.12551 1.86670 1.50392 1.47605 1.07858 1.05616 1.71192 1.21951 0.78693 1.01414 1.02327 1.21646 0.97148 0.83315 0.97397 1.21111 0.96373 0.96802 0.94412 1.21713 0.98989 0.96409 1.00756 1.21845 0.96194 0.99925 1.01207 1.20590 0.95396 0.90984 0.89332 1.42406 1.67671 1.25521 1.01688 1.19299 1.27054 0.97928 0.92155 0.91214 1.24722 1.01995 0.99057 0.95515 1.69673 1.52141 1.39323 0.97259 0.86122 0.79312 0.83412 0.77408 1.20619 1.21995 1.22036 1.23515 1.01675 0.85889 0.87982 1.68116 1.06290 1.29610 1.19021 0.91722 0.89738 0.91758 0.92872 0.91281 0.89860 0.81466 0.91355 0.91541 0.91970 0.90460 0.89836 0.94368 0.92386 0.92421 0.93325 0.91607 0.93670 0.96514 0.96258 0.78000 0.93704 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 9.40 59.84 0.56 0.81 16 2 N -0.60 -3.81 3.37 -189.51 -0.64 -4.45 16 3 C 0.09 0.47 10.47 59.85 0.63 1.10 16 4 C 0.37 3.38 7.37 -155.01 -1.14 2.24 16 5 C -0.01 -0.09 10.49 -17.09 -0.18 -0.27 16 6 N -0.37 -3.99 6.20 -9.45 -0.06 -4.05 16 7 C -0.04 -0.54 6.63 -82.89 -0.55 -1.09 16 8 C 0.58 8.53 6.21 -12.34 -0.08 8.46 16 9 O -0.53 -9.17 13.75 5.31 0.07 -9.10 16 10 N -0.59 -8.04 2.40 -182.71 -0.44 -8.48 16 11 C 0.10 1.08 7.20 59.85 0.43 1.51 16 12 C 0.13 1.88 4.53 -4.05 -0.02 1.86 16 13 C -0.09 -1.50 0.60 -154.51 -0.09 -1.60 16 14 C -0.12 -2.33 6.90 37.16 0.26 -2.07 16 15 C -0.13 -2.26 7.34 37.16 0.27 -1.99 16 16 C 0.17 3.50 5.15 -4.04 -0.02 3.48 16 17 N -0.73 -19.05 5.00 -59.90 -0.30 -19.35 16 18 C -0.23 -6.73 9.99 -15.06 -0.15 -6.88 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 21 N -0.93 -29.06 13.06 55.49 0.72 -28.33 16 22 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 26 C 0.17 2.03 10.76 -17.03 -0.18 1.85 16 27 N -0.51 -5.60 9.22 -11.96 -0.11 -5.71 16 28 H 0.06 0.15 8.11 -51.93 -0.42 -0.27 16 29 H 0.08 0.08 7.80 -51.93 -0.40 -0.32 16 30 H 0.06 0.13 7.74 -51.93 -0.40 -0.27 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.20 7.92 -51.93 -0.41 -0.21 16 33 H 0.08 0.56 7.30 -51.93 -0.38 0.18 16 34 H 0.17 0.89 6.71 -52.49 -0.35 0.54 16 35 H 0.07 0.69 6.93 -51.93 -0.36 0.33 16 36 H 0.07 0.66 7.28 -51.93 -0.38 0.28 16 37 H 0.06 0.70 7.06 -51.93 -0.37 0.33 16 38 H 0.08 0.99 7.96 -51.93 -0.41 0.57 16 39 H 0.08 1.31 7.49 -51.93 -0.39 0.92 16 40 H 0.04 0.70 6.07 -51.93 -0.32 0.38 16 41 H 0.06 1.25 6.86 -51.93 -0.36 0.89 16 42 H 0.06 1.16 7.63 -51.93 -0.40 0.77 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.30 6.86 -51.93 -0.36 0.95 16 45 H 0.04 0.68 6.17 -51.93 -0.32 0.36 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.38 10.58 5.36 -40.82 -0.22 10.36 16 49 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 50 H 0.18 2.02 7.64 -52.48 -0.40 1.62 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -34.99 390.02 -8.13 -43.12 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.88 Total: 5.62 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.36 Total: 6.78 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -0.82 Total: -70.37 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.99 -8.13 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485251397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.634 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds