Wall clock time and date at job start Tue Mar 31 2020 18:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46506 * 119.99924 * 2 1 4 4 C 1.38399 * 120.00025 * 179.97438 * 2 1 3 5 5 C 1.39892 * 119.99616 * 5.00016 * 4 2 1 6 6 N 1.31454 * 120.01036 * 179.97438 * 5 4 2 7 7 C 1.33283 * 120.01224 * 0.02764 * 6 5 4 8 8 C 1.47812 * 120.00147 * 180.02562 * 7 6 5 9 9 O 1.21564 * 120.00035 * 175.24736 * 8 7 6 10 10 N 1.34783 * 120.00249 * 354.97160 * 8 7 6 11 11 C 1.46501 * 119.99583 * 355.39266 * 10 8 7 12 12 C 1.46500 * 119.99869 * 175.40146 * 10 8 7 13 13 C 1.52991 * 109.47480 * 89.99787 * 12 10 8 14 14 C 1.52998 * 109.46993 * 299.99595 * 13 12 10 15 15 C 1.53002 * 109.47309 * 59.99694 * 13 12 10 16 16 C 1.53004 * 109.47181 * 179.97438 * 13 12 10 17 17 N 1.46504 * 109.47391 * 180.02562 * 16 13 12 18 18 C 1.36934 * 119.99927 * 180.02562 * 17 16 13 19 19 H 1.08000 * 120.00356 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99428 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00377 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99445 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47673 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47207 * 120.00101 * 22 20 18 25 25 H 1.48496 * 109.47210 * 239.99556 * 22 20 18 26 26 C 1.39399 * 119.99311 * 0.27122 * 7 6 5 27 27 N 1.32050 * 119.98741 * 359.43643 * 26 7 6 28 28 H 1.08994 * 109.47385 * 240.00037 * 1 2 3 29 29 H 1.09006 * 109.47398 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47283 * 120.00231 * 1 2 3 31 31 H 1.09002 * 109.46929 * 269.99392 * 3 2 1 32 32 H 1.08999 * 109.47106 * 29.99808 * 3 2 1 33 33 H 1.08999 * 109.46734 * 149.99667 * 3 2 1 34 34 H 1.07994 * 119.99610 * 0.02562 * 5 4 2 35 35 H 1.08996 * 109.46996 * 64.57048 * 11 10 8 36 36 H 1.09002 * 109.46596 * 184.56976 * 11 10 8 37 37 H 1.08998 * 109.47258 * 304.56476 * 11 10 8 38 38 H 1.09005 * 109.46424 * 209.99590 * 12 10 8 39 39 H 1.09003 * 109.47025 * 329.99164 * 12 10 8 40 40 H 1.08996 * 109.47634 * 60.00417 * 14 13 12 41 41 H 1.09003 * 109.47230 * 180.02562 * 14 13 12 42 42 H 1.08996 * 109.47111 * 299.99921 * 14 13 12 43 43 H 1.08999 * 109.46982 * 60.00094 * 15 13 12 44 44 H 1.08999 * 109.47213 * 179.97438 * 15 13 12 45 45 H 1.09002 * 109.47341 * 299.99734 * 15 13 12 46 46 H 1.09005 * 109.46738 * 299.99812 * 16 13 12 47 47 H 1.08996 * 109.47328 * 59.99831 * 16 13 12 48 48 H 0.97003 * 119.99329 * 359.97438 * 17 16 13 49 49 H 0.97001 * 119.99917 * 180.02562 * 21 20 18 50 50 H 1.08003 * 120.00924 * 179.72360 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1569 -1.1986 0.0005 5 6 1.4614 -2.4078 -0.1045 6 7 2.1184 -3.5463 -0.1045 7 6 3.4475 -3.5491 -0.0039 8 6 4.1860 -4.8294 -0.0046 9 8 5.4017 -4.8299 0.0000 10 7 3.5118 -5.9965 -0.0046 11 6 2.0503 -5.9980 0.0980 12 6 4.2403 -7.2634 -0.1069 13 6 4.5947 -7.7626 1.2952 14 6 5.4719 -6.7254 1.9992 15 6 3.3112 -7.9760 2.1002 16 6 5.3551 -9.0861 1.1882 17 7 5.6939 -9.5645 2.5308 18 6 6.3808 -10.7389 2.6860 19 1 6.6724 -11.3127 1.8188 20 6 6.7024 -11.1919 3.9582 21 7 6.3474 -10.4924 5.0152 22 14 7.6387 -12.7942 4.1700 23 1 7.9171 -13.3850 2.8363 24 1 8.9204 -12.5296 4.8720 25 1 6.8228 -13.7423 4.9703 26 6 4.1404 -2.3446 0.1070 27 7 3.4807 -1.2007 0.1012 28 1 -0.3634 -0.5138 0.8899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5139 -0.8900 31 1 2.3792 1.5834 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1498 1.1384 0.5139 34 1 0.3846 -2.4059 -0.1864 35 1 1.6238 -5.5199 -0.7838 36 1 1.6919 -7.0253 0.1636 37 1 1.7481 -5.4500 0.9904 38 1 3.6153 -8.0023 -0.6085 39 1 5.1547 -7.1113 -0.6805 40 1 4.9300 -5.7828 2.0755 41 1 5.7248 -7.0813 2.9980 42 1 6.3862 -6.5735 1.4257 43 1 2.6864 -8.7149 1.5986 44 1 3.5637 -8.3321 3.0989 45 1 2.7692 -7.0334 2.1765 46 1 4.7297 -9.8248 0.6868 47 1 6.2694 -8.9345 0.6146 48 1 5.4323 -9.0489 3.3097 49 1 6.5725 -10.8088 5.9041 50 1 5.2170 -2.3468 0.1931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485251397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:14 Heat of formation + Delta-G solvation = 33.866451 kcal Electronic energy + Delta-G solvation = -29477.484143 eV Core-core repulsion = 25540.624814 eV Total energy + Delta-G solvation = -3936.859329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.33723 -40.91962 -38.71883 -37.87355 -36.49587 -35.29961 -34.59261 -32.33041 -31.75881 -29.32040 -28.82008 -28.26968 -27.57924 -27.28537 -26.20756 -25.20313 -24.46394 -23.23599 -21.19297 -19.85290 -19.17275 -18.90210 -18.49787 -18.00881 -17.14118 -17.01790 -16.55615 -16.48327 -16.02812 -15.68241 -15.47957 -15.41902 -15.27678 -14.87677 -14.78461 -14.23291 -14.17311 -14.02038 -13.81767 -13.69454 -13.52488 -13.45342 -13.20508 -12.93956 -12.86129 -12.81190 -12.56964 -12.46149 -12.41489 -12.19814 -12.07746 -11.99409 -11.64665 -11.59027 -11.48574 -11.17561 -11.07408 -10.92655 -10.05053 -9.54634 -8.94971 -8.76993 -7.92568 -5.20208 -0.40576 0.11472 1.46988 1.48477 1.58582 1.72620 1.76538 2.04754 2.57968 2.81689 3.07433 3.25243 3.40635 3.42474 3.74187 3.87044 3.96117 3.99681 4.05985 4.22730 4.30029 4.47350 4.50448 4.50737 4.52146 4.55029 4.59167 4.73623 4.75352 4.84893 4.91550 4.91917 4.93336 4.95649 4.98015 5.06954 5.17766 5.18409 5.22529 5.26102 5.47205 5.51178 5.55687 5.65184 5.68288 5.96157 6.29891 6.33427 6.41406 6.78146 7.16947 7.36105 8.13861 8.37593 9.31592 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.002132 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.258095 B =13127.719318 C =13264.469756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.593 5.593 3 C 0.087 3.913 4 C 0.365 3.635 5 C 0.002 3.998 6 N -0.371 5.371 7 C -0.070 4.070 8 C 0.572 3.428 9 O -0.567 6.567 10 N -0.591 5.591 11 C 0.100 3.900 12 C 0.135 3.865 13 C -0.076 4.076 14 C -0.106 4.106 15 C -0.124 4.124 16 C 0.163 3.837 17 N -0.739 5.739 18 C -0.240 4.240 19 H 0.076 0.924 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.296 1.296 25 H -0.292 1.292 26 C 0.165 3.835 27 N -0.528 5.528 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.206 0.794 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.026 0.974 42 H 0.040 0.960 43 H 0.066 0.934 44 H 0.030 0.970 45 H 0.064 0.936 46 H 0.031 0.969 47 H 0.012 0.988 48 H 0.375 0.625 49 H 0.250 0.750 50 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.626 25.333 -14.687 35.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.303 5.303 3 C -0.056 4.056 4 C 0.123 3.877 5 C -0.173 4.173 6 N -0.087 5.087 7 C -0.208 4.208 8 C 0.360 3.640 9 O -0.446 6.446 10 N -0.321 5.321 11 C -0.042 4.042 12 C 0.012 3.988 13 C -0.078 4.078 14 C -0.163 4.163 15 C -0.181 4.181 16 C 0.036 3.964 17 N -0.383 5.383 18 C -0.372 4.372 19 H 0.094 0.906 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.804 3.196 23 H -0.190 1.190 24 H -0.223 1.223 25 H -0.219 1.219 26 C 0.004 3.996 27 N -0.252 5.252 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.223 0.777 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.030 0.970 48 H 0.208 0.792 49 H 0.059 0.941 50 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.000 25.328 -14.783 34.943 hybrid contribution 1.001 -0.639 0.943 1.516 sum -17.999 24.689 -13.839 33.542 Atomic orbital electron populations 1.22186 0.75073 1.05751 1.03250 1.46634 1.07238 1.02455 1.73987 1.21861 0.97759 0.83651 1.02287 1.19999 0.89503 0.89047 0.89186 1.23827 1.02785 0.85845 1.04839 1.68614 1.06747 1.28693 1.04608 1.21348 0.91479 0.94637 1.13346 1.17838 0.86218 0.83510 0.76422 1.90797 1.14259 1.87346 1.52231 1.47668 1.08954 1.04755 1.70749 1.22084 0.76767 1.02482 1.02866 1.21483 0.97680 0.84594 0.95027 1.21013 0.95930 0.94377 0.96454 1.21540 0.98805 0.97195 0.98783 1.21740 0.95960 1.01293 0.99135 1.20742 0.95699 0.92997 0.86925 1.42604 1.67485 1.24921 1.03285 1.19712 1.26457 0.98600 0.92415 0.90613 1.25579 1.03620 1.02670 0.95326 1.69840 1.53791 1.41165 0.97493 0.85043 0.77468 0.79319 0.77757 1.18969 1.22337 1.21915 1.23403 1.01583 0.86253 0.88343 1.68125 1.07543 1.29093 1.20391 0.90802 0.87490 0.90314 0.92374 0.88466 0.91848 0.77743 0.90109 0.90087 0.92110 0.87533 0.91108 0.93713 0.95488 0.94101 0.91529 0.95064 0.91731 0.95084 0.96993 0.79156 0.94138 0.80944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.11 9.40 127.77 1.20 1.31 16 2 N -0.59 -5.82 3.37 -753.48 -2.54 -8.36 16 3 C 0.09 0.71 10.47 127.77 1.34 2.04 16 4 C 0.37 6.01 7.37 133.34 0.98 6.99 16 5 C 0.00 0.02 10.49 85.15 0.89 0.92 16 6 N -0.37 -7.41 6.20 -183.81 -1.14 -8.55 16 7 C -0.07 -1.76 6.63 41.74 0.28 -1.49 16 8 C 0.57 17.17 6.21 86.78 0.54 17.71 16 9 O -0.57 -20.69 13.75 -3.92 -0.05 -20.74 16 10 N -0.59 -15.50 2.40 -850.23 -2.04 -17.54 16 11 C 0.10 1.93 7.20 127.77 0.92 2.85 16 12 C 0.14 3.85 4.53 86.38 0.39 4.24 16 13 C -0.08 -2.69 0.60 -52.18 -0.03 -2.72 16 14 C -0.11 -4.25 6.90 71.98 0.50 -3.75 16 15 C -0.12 -4.08 7.34 71.98 0.53 -3.55 16 16 C 0.16 6.94 5.15 86.38 0.44 7.39 16 17 N -0.74 -39.55 5.00 -343.43 -1.72 -41.27 16 18 C -0.24 -13.98 9.99 84.04 0.84 -13.14 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 21 N -0.97 -61.85 13.06 21.65 0.28 -61.56 16 22 Si 0.97 47.93 29.55 68.60 2.03 49.95 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 26 C 0.17 4.07 10.76 84.94 0.91 4.98 16 27 N -0.53 -11.55 9.22 -191.74 -1.77 -13.32 16 28 H 0.07 0.04 8.11 -2.39 -0.02 0.02 16 29 H 0.11 -0.28 7.80 -2.38 -0.02 -0.29 16 30 H 0.08 -0.05 7.74 -2.39 -0.02 -0.07 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 0.26 7.92 -2.39 -0.02 0.24 16 33 H 0.06 0.81 7.30 -2.39 -0.02 0.79 16 34 H 0.21 1.26 6.71 -2.91 -0.02 1.24 16 35 H 0.08 1.39 6.93 -2.39 -0.02 1.38 16 36 H 0.08 1.34 7.28 -2.39 -0.02 1.32 16 37 H 0.06 1.22 7.06 -2.39 -0.02 1.20 16 38 H 0.11 2.43 7.96 -2.38 -0.02 2.41 16 39 H 0.07 2.23 7.49 -2.39 -0.02 2.21 16 40 H 0.04 1.71 6.07 -2.39 -0.01 1.69 16 41 H 0.03 1.21 6.86 -2.39 -0.02 1.20 16 42 H 0.04 1.74 7.63 -2.39 -0.02 1.72 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 45 H 0.06 1.86 6.17 -2.39 -0.01 1.84 16 46 H 0.03 1.25 8.14 -2.38 -0.02 1.24 16 47 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 48 H 0.38 21.42 5.36 -92.71 -0.50 20.92 16 49 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.17 4.28 7.64 -2.91 -0.02 4.26 16 Total: -1.00 -78.35 390.02 3.70 -74.65 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.45 Total: 27.26 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 10.20 Total: 19.48 kcal Atomic # 7 Polarization: -141.67 SS G_CDS: -8.92 Total: -150.59 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.95 kcal Total: -78.35 3.70 -74.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485251397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.515 kcal (2) G-P(sol) polarization free energy of solvation -78.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds