Wall clock time and date at job start Tue Mar 31 2020 19:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47201 * 2 1 4 4 N 1.46491 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00185 * 270.32581 * 4 3 2 6 6 H 1.08002 * 119.99516 * 326.14120 * 5 4 3 7 7 C 1.38809 * 120.00566 * 146.14761 * 5 4 3 8 8 N 1.31623 * 119.99542 * 336.90074 * 7 5 4 9 9 Si 1.86799 * 120.00511 * 156.89963 * 7 5 4 10 10 H 1.48497 * 109.46848 * 89.99885 * 9 7 5 11 11 H 1.48496 * 109.47201 * 210.00122 * 9 7 5 12 12 H 1.48497 * 109.46959 * 330.00275 * 9 7 5 13 13 C 1.46498 * 120.00457 * 90.32620 * 4 3 2 14 14 C 1.52997 * 109.47247 * 89.99379 * 13 4 3 15 15 N 1.46500 * 109.47208 * 180.02562 * 14 13 4 16 16 C 1.34781 * 120.00121 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99584 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00055 * 179.97438 * 16 15 14 19 19 H 1.09003 * 107.84777 * 56.52731 * 18 16 15 20 20 C 1.50953 * 108.02652 * 299.99467 * 18 16 15 21 21 C 1.53673 * 110.95802 * 165.71144 * 20 18 16 22 22 C 1.51883 * 106.90047 * 79.08844 * 21 20 18 23 23 N 1.29895 * 127.80646 * 114.67627 * 22 21 20 24 24 N 1.29025 * 109.22703 * 180.39335 * 23 22 21 25 25 C 1.30978 * 109.70677 * 359.93523 * 24 23 22 26 26 N 1.34597 * 124.57682 * 294.92151 * 22 21 20 27 27 C 1.47503 * 125.03205 * 359.46306 * 26 22 21 28 28 C 1.50790 * 108.01693 * 172.98193 * 18 16 15 29 29 H 1.08998 * 109.47255 * 59.99711 * 1 2 3 30 30 H 1.09006 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46863 * 299.99399 * 1 2 3 32 32 H 1.09003 * 109.47165 * 240.00147 * 2 1 3 33 33 H 1.08998 * 109.47255 * 120.00288 * 2 1 3 34 34 H 1.09002 * 109.46722 * 60.00514 * 3 2 1 35 35 H 1.08998 * 109.47252 * 300.00290 * 3 2 1 36 36 H 0.96999 * 120.00019 * 180.02562 * 8 7 5 37 37 H 1.09006 * 109.46577 * 329.99643 * 13 4 3 38 38 H 1.08995 * 109.47770 * 210.00206 * 13 4 3 39 39 H 1.09006 * 109.47116 * 60.00594 * 14 13 4 40 40 H 1.08995 * 109.47411 * 300.01047 * 14 13 4 41 41 H 0.97002 * 120.00266 * 359.97438 * 15 14 13 42 42 H 1.09005 * 109.17780 * 45.33469 * 20 18 16 43 43 H 1.08994 * 109.18191 * 286.09426 * 20 18 16 44 44 H 1.09006 * 109.96401 * 319.74341 * 21 20 18 45 45 H 1.08999 * 109.96949 * 198.43987 * 21 20 18 46 46 H 1.07995 * 126.60820 * 179.89542 * 25 24 23 47 47 H 1.09004 * 109.93209 * 185.36694 * 27 26 22 48 48 H 1.08994 * 109.93435 * 306.49673 * 27 26 22 49 49 H 1.08998 * 109.06423 * 73.95726 * 28 18 16 50 50 H 1.09000 * 109.19586 * 314.82462 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.4356 1.1850 6 1 3.7878 1.9517 2.0442 7 6 5.4018 0.7654 1.2826 8 7 5.6832 -0.2107 0.4456 9 14 6.6331 1.2487 2.6016 10 1 6.3787 0.4551 3.8307 11 1 8.0103 0.9804 2.1153 12 1 6.4889 2.6947 2.9073 13 6 4.2370 1.4499 -1.2696 14 6 4.4917 2.8949 -1.7030 15 7 5.2232 2.9023 -2.9722 16 6 5.5603 4.0730 -3.5490 17 8 5.2575 5.1202 -3.0174 18 6 6.3133 4.0806 -4.8544 19 1 5.7304 3.5127 -5.5797 20 6 7.6234 3.3614 -4.6421 21 6 8.2850 3.0163 -5.9856 22 6 8.9494 4.2857 -6.4895 23 7 10.2183 4.5083 -6.6555 24 7 10.3852 5.7107 -7.0927 25 6 9.2221 6.2988 -7.2225 26 7 8.2898 5.4040 -6.8444 27 6 6.8245 5.5693 -6.8112 28 6 6.3949 5.5067 -5.3375 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 6.5297 -0.6793 0.5139 37 1 3.6476 0.9404 -2.0320 38 1 5.1894 0.9354 -1.1427 39 1 5.0811 3.4044 -0.9406 40 1 3.5393 3.4095 -1.8299 41 1 5.4657 2.0648 -3.3972 42 1 7.4410 2.4417 -4.0861 43 1 8.2933 4.0000 -4.0666 44 1 7.5298 2.6835 -6.6977 45 1 9.0327 2.2362 -5.8428 46 1 9.0451 7.3072 -7.5661 47 1 6.5496 6.5341 -7.2377 48 1 6.3471 4.7659 -7.3720 49 1 7.1208 6.0473 -4.7301 50 1 5.4181 5.9781 -5.2295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493306684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:24 Heat of formation + Delta-G solvation = 48.736038 kcal Electronic energy + Delta-G solvation = -29329.009929 eV Core-core repulsion = 25392.795393 eV Total energy + Delta-G solvation = -3936.214535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.49548 -40.06096 -37.21569 -36.44141 -34.69320 -34.26878 -32.86961 -32.33293 -30.90468 -30.13800 -28.47141 -26.94718 -25.60715 -24.62450 -23.47589 -22.65348 -21.87380 -21.33309 -20.50529 -20.06870 -19.70249 -17.87292 -17.37510 -16.55188 -16.21445 -15.78600 -15.40466 -15.27791 -14.99184 -14.88757 -14.42994 -14.32482 -13.98900 -13.92577 -13.53169 -13.11950 -13.02059 -12.82178 -12.68393 -12.50540 -12.30425 -12.00158 -11.98300 -11.61972 -11.33315 -11.30417 -11.14351 -11.06420 -10.93591 -10.78557 -10.55117 -10.53091 -10.40244 -10.32731 -10.02789 -10.00447 -9.74666 -9.60746 -9.34929 -8.67175 -8.55715 -6.73783 -5.89464 -3.42652 1.66047 2.23688 2.69825 2.77680 3.29143 3.35327 3.40363 3.44857 3.89929 4.09839 4.21609 4.29452 4.42398 4.46267 4.54937 4.67117 4.72119 4.92784 5.07109 5.11175 5.19621 5.22914 5.40385 5.42574 5.51282 5.60576 5.69597 5.76319 5.77569 5.80588 5.84616 5.98261 6.01881 6.08266 6.12630 6.22566 6.43778 6.46499 6.56616 6.62275 6.63827 6.76104 6.95089 6.99600 7.19585 7.51046 7.74157 7.78780 8.38744 8.43510 8.55575 9.07603 9.71211 10.26248 11.11148 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.002642 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.672376 B =10596.410423 C =11753.862895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.258 4.258 6 H 0.063 0.937 7 C 0.011 3.989 8 N -0.887 5.887 9 Si 0.894 3.106 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.133 3.867 14 C 0.098 3.902 15 N -0.717 5.717 16 C 0.507 3.493 17 O -0.547 6.547 18 C -0.109 4.109 19 H 0.095 0.905 20 C -0.115 4.115 21 C -0.030 4.030 22 C 0.178 3.822 23 N -0.295 5.295 24 N -0.305 5.305 25 C 0.147 3.853 26 N -0.469 5.469 27 C 0.106 3.894 28 C -0.118 4.118 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.255 0.745 37 H 0.027 0.973 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.397 0.603 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.217 0.783 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.079 0.921 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 6.815 -16.921 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.388 4.388 6 H 0.081 0.919 7 C -0.189 4.189 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.212 1.212 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 C -0.027 4.027 15 N -0.367 5.367 16 C 0.292 3.708 17 O -0.425 6.425 18 C -0.130 4.130 19 H 0.113 0.887 20 C -0.154 4.154 21 C -0.069 4.069 22 C -0.090 4.090 23 N -0.135 5.135 24 N -0.144 5.144 25 C -0.141 4.141 26 N -0.160 5.160 27 C -0.017 4.017 28 C -0.157 4.157 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.231 0.769 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.234 0.766 47 H 0.125 0.875 48 H 0.116 0.884 49 H 0.098 0.902 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.689 7.254 -16.523 18.058 hybrid contribution -0.649 0.137 0.475 0.816 sum -1.338 7.391 -16.048 17.719 Atomic orbital electron populations 1.21761 0.97761 1.00344 1.00704 1.22074 0.93050 1.00747 1.02080 1.20970 0.85038 0.93537 0.98326 1.43703 0.99471 1.84847 1.01978 1.19075 1.02780 1.26615 0.90295 0.91884 1.25052 1.00582 0.95145 0.98150 1.69957 1.23645 1.20023 1.39329 0.86434 0.80913 0.78757 0.81564 1.21216 1.21419 1.20311 1.21100 1.00792 0.90894 0.86644 1.22366 0.94754 1.02733 0.82844 1.46140 1.57604 1.07840 1.25121 1.20490 0.79682 0.84247 0.86359 1.90695 1.55270 1.31690 1.64819 1.20669 0.97669 0.97942 0.96728 0.88700 1.21377 0.95158 1.01801 0.97033 1.20571 0.99694 0.90478 0.96204 1.24896 0.89936 0.91662 1.02521 1.74243 1.13210 1.09131 1.16943 1.74529 1.21455 1.01400 1.17054 1.26328 0.84939 0.98666 1.04143 1.46354 1.09532 1.12026 1.48113 1.22529 0.75383 1.04822 0.98919 1.21479 1.04724 0.96212 0.93254 0.93704 0.93856 0.93375 0.93115 0.91837 0.93852 0.94887 0.93520 0.95459 0.87685 0.91680 0.93319 0.76869 0.89008 0.90586 0.89100 0.87300 0.76619 0.87527 0.88360 0.90188 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.14 -2.60 6.26 -26.73 -0.17 -2.77 16 3 C 0.15 2.93 5.67 -4.05 -0.02 2.91 16 4 N -0.58 -13.42 2.45 -173.25 -0.42 -13.85 16 5 C -0.26 -6.69 9.49 -15.06 -0.14 -6.84 16 6 H 0.06 1.66 7.93 -52.49 -0.42 1.24 16 7 C 0.01 0.28 4.95 -17.43 -0.09 0.19 16 8 N -0.89 -23.75 11.31 55.49 0.63 -23.12 16 9 Si 0.89 20.99 29.61 -169.99 -5.03 15.96 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.13 2.78 5.41 -4.04 -0.02 2.75 16 14 C 0.10 1.85 6.00 -4.04 -0.02 1.83 16 15 N -0.72 -10.42 5.27 -60.29 -0.32 -10.74 16 16 C 0.51 7.12 7.00 -10.98 -0.08 7.05 16 17 O -0.55 -9.99 15.64 5.55 0.09 -9.90 16 18 C -0.11 -0.97 1.93 -93.91 -0.18 -1.16 16 19 H 0.09 0.59 7.67 -51.93 -0.40 0.19 16 20 C -0.11 -1.04 4.89 -27.41 -0.13 -1.17 16 21 C -0.03 -0.23 6.02 -26.95 -0.16 -0.40 16 22 C 0.18 1.93 7.03 -155.75 -1.09 0.84 16 23 N -0.30 -4.25 12.23 32.84 0.40 -3.85 16 24 N -0.31 -4.22 12.25 29.60 0.36 -3.86 16 25 C 0.15 1.40 12.83 -90.34 -1.16 0.24 16 26 N -0.47 -4.09 2.72 -114.24 -0.31 -4.40 16 27 C 0.11 0.56 6.52 -3.16 -0.02 0.54 16 28 C -0.12 -0.97 4.42 -27.51 -0.12 -1.09 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 35 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 36 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.03 0.53 8.07 -51.93 -0.42 0.11 16 38 H 0.11 2.48 5.31 -51.93 -0.28 2.20 16 39 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.40 4.72 7.69 -40.82 -0.31 4.40 16 42 H 0.09 0.80 6.99 -51.93 -0.36 0.44 16 43 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 44 H 0.09 0.48 7.89 -51.93 -0.41 0.07 16 45 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.22 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.11 0.31 8.13 -51.93 -0.42 -0.11 16 48 H 0.10 0.35 7.88 -51.93 -0.41 -0.05 16 49 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 50 H 0.10 0.86 7.54 -51.93 -0.39 0.47 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -33.98 399.84 -10.06 -44.04 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -8.43 Total: 2.55 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -3.05 Total: 1.13 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.34 Total: -59.80 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.98 -10.06 -44.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493306684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.775 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds