Wall clock time and date at job start Tue Mar 31 2020 19:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47201 * 2 1 4 4 N 1.46491 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00185 * 270.32581 * 4 3 2 6 6 H 1.08002 * 119.99516 * 326.14120 * 5 4 3 7 7 C 1.38809 * 120.00566 * 146.14761 * 5 4 3 8 8 N 1.31623 * 119.99542 * 336.90074 * 7 5 4 9 9 Si 1.86799 * 120.00511 * 156.89963 * 7 5 4 10 10 H 1.48497 * 109.46848 * 89.99885 * 9 7 5 11 11 H 1.48496 * 109.47201 * 210.00122 * 9 7 5 12 12 H 1.48497 * 109.46959 * 330.00275 * 9 7 5 13 13 C 1.46498 * 120.00457 * 90.32620 * 4 3 2 14 14 C 1.52997 * 109.47247 * 89.99379 * 13 4 3 15 15 N 1.46500 * 109.47208 * 180.02562 * 14 13 4 16 16 C 1.34781 * 120.00121 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99584 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00055 * 179.97438 * 16 15 14 19 19 H 1.09003 * 107.84777 * 56.52731 * 18 16 15 20 20 C 1.50953 * 108.02652 * 299.99467 * 18 16 15 21 21 C 1.53673 * 110.95802 * 165.71144 * 20 18 16 22 22 C 1.51883 * 106.90047 * 79.08844 * 21 20 18 23 23 N 1.29895 * 127.80646 * 114.67627 * 22 21 20 24 24 N 1.29025 * 109.22703 * 180.39335 * 23 22 21 25 25 C 1.30978 * 109.70677 * 359.93523 * 24 23 22 26 26 N 1.34597 * 124.57682 * 294.92151 * 22 21 20 27 27 C 1.47503 * 125.03205 * 359.46306 * 26 22 21 28 28 C 1.50790 * 108.01693 * 172.98193 * 18 16 15 29 29 H 1.08998 * 109.47255 * 59.99711 * 1 2 3 30 30 H 1.09006 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46863 * 299.99399 * 1 2 3 32 32 H 1.09003 * 109.47165 * 240.00147 * 2 1 3 33 33 H 1.08998 * 109.47255 * 120.00288 * 2 1 3 34 34 H 1.09002 * 109.46722 * 60.00514 * 3 2 1 35 35 H 1.08998 * 109.47252 * 300.00290 * 3 2 1 36 36 H 0.96999 * 120.00019 * 180.02562 * 8 7 5 37 37 H 1.09006 * 109.46577 * 329.99643 * 13 4 3 38 38 H 1.08995 * 109.47770 * 210.00206 * 13 4 3 39 39 H 1.09006 * 109.47116 * 60.00594 * 14 13 4 40 40 H 1.08995 * 109.47411 * 300.01047 * 14 13 4 41 41 H 0.97002 * 120.00266 * 359.97438 * 15 14 13 42 42 H 1.09005 * 109.17780 * 45.33469 * 20 18 16 43 43 H 1.08994 * 109.18191 * 286.09426 * 20 18 16 44 44 H 1.09006 * 109.96401 * 319.74341 * 21 20 18 45 45 H 1.08999 * 109.96949 * 198.43987 * 21 20 18 46 46 H 1.07995 * 126.60820 * 179.89542 * 25 24 23 47 47 H 1.09004 * 109.93209 * 185.36694 * 27 26 22 48 48 H 1.08994 * 109.93435 * 306.49673 * 27 26 22 49 49 H 1.08998 * 109.06423 * 73.95726 * 28 18 16 50 50 H 1.09000 * 109.19586 * 314.82462 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.4356 1.1850 6 1 3.7878 1.9517 2.0442 7 6 5.4018 0.7654 1.2826 8 7 5.6832 -0.2107 0.4456 9 14 6.6331 1.2487 2.6016 10 1 6.3787 0.4551 3.8307 11 1 8.0103 0.9804 2.1153 12 1 6.4889 2.6947 2.9073 13 6 4.2370 1.4499 -1.2696 14 6 4.4917 2.8949 -1.7030 15 7 5.2232 2.9023 -2.9722 16 6 5.5603 4.0730 -3.5490 17 8 5.2575 5.1202 -3.0174 18 6 6.3133 4.0806 -4.8544 19 1 5.7304 3.5127 -5.5797 20 6 7.6234 3.3614 -4.6421 21 6 8.2850 3.0163 -5.9856 22 6 8.9494 4.2857 -6.4895 23 7 10.2183 4.5083 -6.6555 24 7 10.3852 5.7107 -7.0927 25 6 9.2221 6.2988 -7.2225 26 7 8.2898 5.4040 -6.8444 27 6 6.8245 5.5693 -6.8112 28 6 6.3949 5.5067 -5.3375 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 6.5297 -0.6793 0.5139 37 1 3.6476 0.9404 -2.0320 38 1 5.1894 0.9354 -1.1427 39 1 5.0811 3.4044 -0.9406 40 1 3.5393 3.4095 -1.8299 41 1 5.4657 2.0648 -3.3972 42 1 7.4410 2.4417 -4.0861 43 1 8.2933 4.0000 -4.0666 44 1 7.5298 2.6835 -6.6977 45 1 9.0327 2.2362 -5.8428 46 1 9.0451 7.3072 -7.5661 47 1 6.5496 6.5341 -7.2377 48 1 6.3471 4.7659 -7.3720 49 1 7.1208 6.0473 -4.7301 50 1 5.4181 5.9781 -5.2295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493306684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:23 Heat of formation + Delta-G solvation = 28.555074 kcal Electronic energy + Delta-G solvation = -29329.885041 eV Core-core repulsion = 25392.795393 eV Total energy + Delta-G solvation = -3937.089647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.24532 -41.16580 -38.38649 -37.81331 -35.86660 -35.20494 -34.53815 -33.12061 -32.59520 -30.95492 -29.85195 -27.82133 -27.32564 -25.37324 -24.95154 -23.41585 -23.14615 -22.60494 -21.56903 -21.19112 -20.88277 -18.88849 -18.45614 -17.98983 -17.11015 -16.98944 -16.85548 -16.35772 -16.04976 -15.92400 -15.74558 -15.65146 -15.17791 -15.04887 -14.64050 -14.54500 -14.16217 -13.96035 -13.70027 -13.63758 -13.35728 -13.14588 -13.03747 -12.74949 -12.64339 -12.57201 -12.51204 -12.42529 -12.17123 -12.04969 -11.96708 -11.89066 -11.79550 -11.71000 -11.33452 -11.31011 -11.10565 -10.78887 -10.55480 -10.20192 -10.00906 -8.63383 -7.86797 -5.42301 0.96037 1.41065 1.46479 1.53892 1.62886 1.64920 1.90057 2.19342 2.50284 3.21339 3.23321 3.44225 3.53765 3.63312 3.80242 3.83922 3.89870 4.07458 4.23543 4.27299 4.28148 4.35870 4.38469 4.42926 4.45728 4.50544 4.60000 4.69516 4.75030 4.81080 4.83932 4.87285 4.96644 4.97765 5.05257 5.11293 5.16009 5.18276 5.25380 5.28527 5.29973 5.44983 5.47918 5.62211 5.67915 5.83028 6.01248 6.43471 6.62686 7.14134 7.29282 7.76252 7.84350 8.33088 9.09711 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.002642 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.672376 B =10596.410423 C =11753.862895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.144 3.856 4 N -0.598 5.598 5 C -0.266 4.266 6 H 0.052 0.948 7 C -0.028 4.028 8 N -0.905 5.905 9 Si 0.943 3.057 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.141 3.859 14 C 0.120 3.880 15 N -0.711 5.711 16 C 0.504 3.496 17 O -0.592 6.592 18 C -0.095 4.095 19 H 0.141 0.859 20 C -0.108 4.108 21 C -0.022 4.022 22 C 0.175 3.825 23 N -0.349 5.349 24 N -0.360 5.360 25 C 0.160 3.840 26 N -0.467 5.467 27 C 0.110 3.890 28 C -0.115 4.115 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.253 0.747 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.024 0.976 40 H 0.045 0.955 41 H 0.413 0.587 42 H 0.095 0.905 43 H 0.042 0.958 44 H 0.130 0.870 45 H 0.108 0.892 46 H 0.258 0.742 47 H 0.139 0.861 48 H 0.130 0.870 49 H 0.047 0.953 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.994 6.918 -19.439 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.019 3.981 4 N -0.318 5.318 5 C -0.397 4.397 6 H 0.070 0.930 7 C -0.226 4.226 8 N -0.549 5.549 9 Si 0.771 3.229 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.014 3.986 14 C -0.007 4.007 15 N -0.362 5.362 16 C 0.292 3.708 17 O -0.473 6.473 18 C -0.116 4.116 19 H 0.158 0.842 20 C -0.147 4.147 21 C -0.061 4.061 22 C -0.095 4.095 23 N -0.188 5.188 24 N -0.199 5.199 25 C -0.129 4.129 26 N -0.157 5.157 27 C -0.010 4.010 28 C -0.153 4.153 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.250 0.750 42 H 0.114 0.886 43 H 0.061 0.939 44 H 0.148 0.852 45 H 0.127 0.873 46 H 0.274 0.726 47 H 0.157 0.843 48 H 0.148 0.852 49 H 0.066 0.934 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.610 7.340 -19.065 20.596 hybrid contribution -0.126 0.170 1.286 1.303 sum -2.736 7.511 -17.779 19.493 Atomic orbital electron populations 1.21669 0.94302 1.01685 1.01950 1.21910 0.96014 0.99082 0.99979 1.21094 0.83312 0.94579 0.99127 1.43939 1.00930 1.85088 1.01873 1.19195 1.03346 1.26010 0.91132 0.93011 1.25530 1.01704 0.95433 0.99893 1.70041 1.23731 1.20693 1.40471 0.85676 0.79197 0.78038 0.79942 1.20952 1.21576 1.20745 1.20969 0.99640 0.91697 0.86310 1.21779 0.94283 1.00723 0.83868 1.45980 1.57313 1.09197 1.23728 1.21435 0.78815 0.82976 0.87573 1.90678 1.56984 1.33243 1.66389 1.20728 0.97113 0.99436 0.94354 0.84182 1.21293 0.94548 1.01225 0.97664 1.20685 1.00339 0.89248 0.95846 1.25347 0.89483 0.93016 1.01618 1.74120 1.15586 1.10087 1.19036 1.74406 1.24073 1.01965 1.19434 1.27092 0.84058 0.99761 1.01977 1.46554 1.10768 1.11087 1.47294 1.22825 0.73205 1.08092 0.96897 1.21426 1.03865 0.94996 0.95027 0.91813 0.92510 0.92759 0.93962 0.95153 0.94274 0.92739 0.93779 0.93674 0.90142 0.95705 0.93634 0.75015 0.88625 0.93941 0.85184 0.87319 0.72641 0.84265 0.85168 0.93396 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.13 -4.74 6.26 30.59 0.19 -4.54 16 3 C 0.14 5.64 5.67 86.38 0.49 6.13 16 4 N -0.60 -27.90 2.45 -702.03 -1.72 -29.62 16 5 C -0.27 -14.11 9.49 84.03 0.80 -13.31 16 6 H 0.05 2.80 7.93 -2.91 -0.02 2.78 16 7 C -0.03 -1.47 4.95 84.86 0.42 -1.05 16 8 N -0.91 -49.21 11.31 21.65 0.24 -48.97 16 9 Si 0.94 44.00 29.61 68.60 2.03 46.04 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 C 0.14 5.87 5.41 86.38 0.47 6.33 16 14 C 0.12 4.56 6.00 86.38 0.52 5.08 16 15 N -0.71 -19.98 5.27 -463.05 -2.44 -22.42 16 16 C 0.50 13.64 7.00 87.66 0.61 14.25 16 17 O -0.59 -21.73 15.64 -3.04 -0.05 -21.78 16 18 C -0.10 -1.46 1.93 -12.92 -0.02 -1.48 16 19 H 0.14 0.98 7.67 -2.39 -0.02 0.96 16 20 C -0.11 -1.80 4.89 30.15 0.15 -1.65 16 21 C -0.02 -0.29 6.02 30.45 0.18 -0.10 16 22 C 0.18 3.55 7.03 138.83 0.98 4.52 16 23 N -0.35 -10.12 12.23 -50.00 -0.61 -10.73 16 24 N -0.36 -9.96 12.25 -60.28 -0.74 -10.70 16 25 C 0.16 2.75 12.83 180.25 2.31 5.06 16 26 N -0.47 -6.90 2.72 -515.33 -1.40 -8.30 16 27 C 0.11 0.69 6.52 86.40 0.56 1.26 16 28 C -0.11 -1.60 4.42 30.09 0.13 -1.47 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 35 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 36 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 37 H 0.04 1.69 8.07 -2.38 -0.02 1.68 16 38 H 0.08 3.84 5.31 -2.39 -0.01 3.83 16 39 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.41 9.03 7.69 -92.71 -0.71 8.32 16 42 H 0.10 1.52 6.99 -2.38 -0.02 1.50 16 43 H 0.04 0.99 7.91 -2.39 -0.02 0.98 16 44 H 0.13 0.71 7.89 -2.38 -0.02 0.69 16 45 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.26 1.74 8.06 -2.91 -0.02 1.72 16 47 H 0.14 0.06 8.13 -2.38 -0.02 0.05 16 48 H 0.13 0.11 7.88 -2.39 -0.02 0.09 16 49 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 50 H 0.10 1.47 7.54 -2.39 -0.02 1.46 16 Total: -1.00 -79.76 399.84 4.03 -75.73 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.22 Total: 14.74 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 8.50 Total: 16.02 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -6.67 Total: -130.74 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.05 Total: -21.78 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.04 kcal Total: -79.76 4.03 -75.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493306684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.282 kcal (2) G-P(sol) polarization free energy of solvation -79.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds