Wall clock time and date at job start Tue Mar 31 2020 19:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47284 * 2 1 4 4 N 1.46505 * 109.47130 * 184.63454 * 3 2 1 5 5 C 1.36932 * 120.00210 * 85.65181 * 4 3 2 6 6 H 1.08000 * 120.00197 * 35.60176 * 5 4 3 7 7 C 1.38813 * 120.00114 * 215.88363 * 5 4 3 8 8 N 1.31614 * 120.00064 * 215.28647 * 7 5 4 9 9 Si 1.86800 * 119.99855 * 35.28660 * 7 5 4 10 10 H 1.48496 * 109.47383 * 89.67889 * 9 7 5 11 11 H 1.48505 * 109.46918 * 209.68073 * 9 7 5 12 12 H 1.48502 * 109.47141 * 329.67729 * 9 7 5 13 13 C 1.46500 * 120.00046 * 265.64699 * 4 3 2 14 14 C 1.53000 * 109.47023 * 274.87901 * 13 4 3 15 15 N 1.46501 * 109.46897 * 179.97438 * 14 13 4 16 16 C 1.34777 * 119.99873 * 179.97438 * 15 14 13 17 17 O 1.21281 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99935 * 180.02562 * 16 15 14 19 19 H 1.08998 * 107.88020 * 299.99850 * 18 16 15 20 20 C 1.50952 * 108.03225 * 56.55111 * 18 16 15 21 21 C 1.53669 * 110.96186 * 194.28881 * 20 18 16 22 22 C 1.51884 * 106.89578 * 280.91395 * 21 20 18 23 23 N 1.29900 * 127.80511 * 245.15967 * 22 21 20 24 24 N 1.29036 * 109.22238 * 179.73612 * 23 22 21 25 25 C 1.30964 * 109.70856 * 0.06459 * 24 23 22 26 26 N 1.34603 * 124.58248 * 65.10017 * 22 21 20 27 27 C 1.47501 * 125.02469 * 0.50141 * 26 22 21 28 28 C 1.50861 * 108.02762 * 183.45290 * 18 16 15 29 29 H 1.08997 * 109.47613 * 184.82820 * 1 2 3 30 30 H 1.09003 * 109.46916 * 304.82615 * 1 2 3 31 31 H 1.08996 * 109.47348 * 64.82614 * 1 2 3 32 32 H 1.09002 * 109.46938 * 239.99829 * 2 1 3 33 33 H 1.09000 * 109.47189 * 120.00142 * 2 1 3 34 34 H 1.09001 * 109.47506 * 64.63481 * 3 2 1 35 35 H 1.08999 * 109.46983 * 304.63239 * 3 2 1 36 36 H 0.97003 * 120.00318 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46708 * 34.87790 * 13 4 3 38 38 H 1.08996 * 109.47130 * 154.88196 * 13 4 3 39 39 H 1.08999 * 109.47316 * 300.00055 * 14 13 4 40 40 H 1.09009 * 109.47185 * 60.00198 * 14 13 4 41 41 H 0.96997 * 120.00442 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.17836 * 314.66624 * 20 18 16 43 43 H 1.09000 * 109.18348 * 73.90118 * 20 18 16 44 44 H 1.09004 * 109.96994 * 40.25724 * 21 20 18 45 45 H 1.08998 * 109.97250 * 161.47780 * 21 20 18 46 46 H 1.08004 * 126.60858 * 180.09376 * 25 24 23 47 47 H 1.09003 * 109.93018 * 53.44700 * 27 26 22 48 48 H 1.09001 * 109.93043 * 174.57598 * 27 26 22 49 49 H 1.09007 * 109.14343 * 285.98007 * 28 18 16 50 50 H 1.08996 * 109.15326 * 45.12889 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5007 1.4439 -0.1116 5 6 4.0933 1.3866 -1.3448 6 1 3.6388 1.8885 -2.1861 7 6 5.2750 0.6784 -1.5147 8 7 6.1882 1.1144 -2.3563 9 14 5.5691 -0.8933 -0.5490 10 1 5.0472 -2.0517 -1.3177 11 1 7.0259 -1.0677 -0.3190 12 1 4.8683 -0.8100 0.7576 13 6 4.3276 1.5068 1.0961 14 6 4.5074 2.9672 1.5156 15 7 5.3337 3.0301 2.7237 16 6 5.6269 4.2229 3.2782 17 8 5.2064 5.2443 2.7774 18 6 6.4775 4.2876 4.5206 19 1 5.9664 3.7300 5.3054 20 6 7.7848 3.5918 4.2286 21 6 8.5558 3.3033 5.5262 22 6 9.2253 4.6023 5.9401 23 7 10.4974 4.8575 6.0036 24 7 10.6673 6.0759 6.3930 25 6 9.5035 6.6419 6.5935 26 7 8.5674 5.7159 6.3128 27 6 7.1002 5.8471 6.3881 28 6 6.5631 5.7304 4.9531 29 1 -0.3634 -1.0240 0.0865 30 1 -0.3633 0.5869 0.8436 31 1 -0.3634 0.4371 -0.9300 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.7461 1.9318 0.9286 35 1 1.6104 1.9797 -0.8456 36 1 7.0142 0.6197 -2.4748 37 1 3.8394 0.9554 1.8997 38 1 5.3028 1.0648 0.8922 39 1 4.9954 3.5186 0.7120 40 1 3.5321 3.4094 1.7195 41 1 5.6704 2.2133 3.1240 42 1 7.5833 2.6516 3.7153 43 1 8.3928 4.2273 3.5846 44 1 7.8660 2.9758 6.3041 45 1 9.3085 2.5351 5.3491 46 1 9.3283 7.6561 6.9211 47 1 6.6870 5.0498 7.0061 48 1 6.8350 6.8175 6.8078 49 1 7.2283 6.2674 4.2769 50 1 5.5701 6.1774 4.9060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493306685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:29 Heat of formation + Delta-G solvation = 55.751073 kcal Electronic energy + Delta-G solvation = -29380.550397 eV Core-core repulsion = 25444.640056 eV Total energy + Delta-G solvation = -3935.910340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.52059 -40.15393 -37.31933 -36.66689 -34.79216 -34.37309 -32.90411 -32.36796 -31.39788 -30.19594 -28.61457 -27.03954 -25.86904 -24.65551 -23.41274 -22.67975 -22.02083 -21.67807 -20.53747 -20.15496 -19.78844 -17.91122 -17.49835 -16.60709 -16.27728 -15.93248 -15.54603 -15.32428 -15.16700 -14.93185 -14.68962 -14.35696 -14.10800 -13.98691 -13.68329 -13.18749 -13.02851 -12.84954 -12.75984 -12.57654 -12.40080 -12.37639 -12.03809 -11.88693 -11.65312 -11.35870 -11.26055 -11.20387 -11.15656 -10.80180 -10.69535 -10.55535 -10.51388 -10.42611 -10.18610 -9.96488 -9.72619 -9.56438 -9.38510 -8.77214 -8.52818 -6.98825 -6.17447 -3.43447 1.63557 2.21003 2.65158 2.71775 3.20420 3.27615 3.40332 3.44105 3.85902 4.06184 4.17701 4.23350 4.40685 4.45093 4.48635 4.62594 4.67969 4.87566 4.92580 5.01650 5.06767 5.12062 5.20591 5.37268 5.47041 5.54498 5.55437 5.61854 5.72105 5.74061 5.75717 5.79170 5.83300 5.91756 5.95351 6.07258 6.13043 6.32622 6.41619 6.46756 6.56317 6.59724 6.64585 6.78120 6.85605 7.00225 7.64073 7.91154 8.29214 8.32761 8.53295 8.89338 9.61911 10.03566 10.97952 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002634 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.385525 B =10627.733084 C =11544.183432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.596 5.596 5 C -0.282 4.282 6 H 0.077 0.923 7 C 0.048 3.952 8 N -0.873 5.873 9 Si 0.844 3.156 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.263 1.263 13 C 0.143 3.857 14 C 0.096 3.904 15 N -0.722 5.722 16 C 0.509 3.491 17 O -0.542 6.542 18 C -0.108 4.108 19 H 0.096 0.904 20 C -0.116 4.116 21 C -0.030 4.030 22 C 0.177 3.823 23 N -0.295 5.295 24 N -0.305 5.305 25 C 0.148 3.852 26 N -0.470 5.470 27 C 0.106 3.894 28 C -0.119 4.119 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.264 0.736 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.396 0.604 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.218 0.782 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.080 0.920 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 5.269 20.407 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.023 3.977 4 N -0.317 5.317 5 C -0.410 4.410 6 H 0.095 0.905 7 C -0.154 4.154 8 N -0.511 5.511 9 Si 0.671 3.329 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.188 1.188 13 C 0.016 3.984 14 C -0.029 4.029 15 N -0.373 5.373 16 C 0.294 3.706 17 O -0.419 6.419 18 C -0.130 4.130 19 H 0.114 0.886 20 C -0.155 4.155 21 C -0.069 4.069 22 C -0.091 4.091 23 N -0.135 5.135 24 N -0.144 5.144 25 C -0.140 4.140 26 N -0.161 5.161 27 C -0.016 4.016 28 C -0.158 4.158 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.229 0.771 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.234 0.766 47 H 0.116 0.884 48 H 0.125 0.875 49 H 0.099 0.901 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.220 5.838 19.810 20.689 hybrid contribution -0.980 -1.136 0.660 1.639 sum -2.199 4.702 20.471 21.119 Atomic orbital electron populations 1.21723 0.97127 1.00501 1.01116 1.22120 0.93961 1.00760 1.01791 1.20986 0.84256 0.93624 0.98857 1.43982 1.00080 1.85231 1.02393 1.18641 1.06688 1.28418 0.87243 0.90498 1.25444 0.96000 0.97890 0.96102 1.70097 1.05825 1.36856 1.38313 0.87446 0.76449 0.87710 0.81318 1.21620 1.22148 1.18802 1.21303 0.96231 0.91707 0.89205 1.22376 0.93824 1.01571 0.85107 1.46143 1.53371 1.08017 1.29745 1.20479 0.80788 0.83869 0.85428 1.90708 1.53677 1.34042 1.63468 1.20689 0.96933 0.98004 0.97359 0.88601 1.21396 0.94699 1.02012 0.97393 1.20558 0.99181 0.89983 0.97224 1.24870 0.89897 0.91803 1.02524 1.74253 1.13108 1.08230 1.17865 1.74532 1.21538 1.01574 1.16747 1.26334 0.84794 0.98136 1.04723 1.46358 1.09383 1.11201 1.49119 1.22536 0.75043 1.04968 0.99085 1.21509 1.04270 0.95883 0.94092 0.93743 0.93477 0.93022 0.91582 0.93429 0.94259 0.93197 0.92590 0.94361 0.92105 0.90630 0.92451 0.77052 0.89221 0.90384 0.89148 0.87313 0.76586 0.88395 0.87476 0.90125 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.15 0.37 -1.62 16 2 C -0.15 -2.50 6.24 -26.74 -0.17 -2.67 16 3 C 0.15 2.75 5.69 -4.04 -0.02 2.72 16 4 N -0.60 -13.04 2.08 -173.24 -0.36 -13.40 16 5 C -0.28 -7.42 9.78 -15.06 -0.15 -7.57 16 6 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 7 C 0.05 1.31 4.97 -17.43 -0.09 1.23 16 8 N -0.87 -25.39 13.97 55.49 0.78 -24.61 16 9 Si 0.84 20.06 26.43 -169.99 -4.49 15.57 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -5.76 5.82 56.52 0.33 -5.43 16 13 C 0.14 2.74 4.05 -4.04 -0.02 2.72 16 14 C 0.10 1.71 6.00 -4.04 -0.02 1.69 16 15 N -0.72 -9.82 5.27 -60.29 -0.32 -10.14 16 16 C 0.51 6.80 7.07 -10.98 -0.08 6.72 16 17 O -0.54 -9.55 15.58 5.56 0.09 -9.46 16 18 C -0.11 -0.91 1.95 -93.87 -0.18 -1.10 16 19 H 0.10 0.54 7.67 -51.93 -0.40 0.14 16 20 C -0.12 -0.99 4.89 -27.41 -0.13 -1.13 16 21 C -0.03 -0.22 6.02 -26.95 -0.16 -0.38 16 22 C 0.18 1.87 7.03 -155.74 -1.09 0.78 16 23 N -0.29 -4.18 12.23 32.85 0.40 -3.78 16 24 N -0.30 -4.16 12.24 29.59 0.36 -3.80 16 25 C 0.15 1.38 12.83 -90.36 -1.16 0.22 16 26 N -0.47 -3.95 2.72 -114.22 -0.31 -4.26 16 27 C 0.11 0.53 6.53 -3.15 -0.02 0.51 16 28 C -0.12 -0.93 4.45 -27.46 -0.12 -1.05 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.65 8.04 -51.93 -0.42 0.23 16 35 H 0.05 0.94 8.07 -51.93 -0.42 0.53 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 37 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.06 1.27 4.53 -51.93 -0.24 1.04 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 41 H 0.40 4.23 7.47 -40.82 -0.30 3.93 16 42 H 0.09 0.71 6.78 -51.93 -0.35 0.36 16 43 H 0.08 0.87 7.91 -51.93 -0.41 0.45 16 44 H 0.09 0.43 7.89 -51.93 -0.41 0.03 16 45 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.22 1.04 8.06 -52.48 -0.42 0.62 16 47 H 0.10 0.32 7.87 -51.93 -0.41 -0.09 16 48 H 0.11 0.28 8.13 -51.93 -0.42 -0.14 16 49 H 0.08 0.83 8.08 -51.92 -0.42 0.41 16 50 H 0.10 0.83 7.47 -51.93 -0.39 0.45 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -35.43 395.54 -9.39 -44.82 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.44 Total: 2.03 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.05 Total: 1.08 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.55 Total: -59.99 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.49 Total: 15.57 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.43 -9.39 -44.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493306685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.566 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds