Wall clock time and date at job start Tue Mar 31 2020 19:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47284 * 2 1 4 4 N 1.46505 * 109.47130 * 184.63454 * 3 2 1 5 5 C 1.36932 * 120.00210 * 85.65181 * 4 3 2 6 6 H 1.08000 * 120.00197 * 35.60176 * 5 4 3 7 7 C 1.38813 * 120.00114 * 215.88363 * 5 4 3 8 8 N 1.31614 * 120.00064 * 215.28647 * 7 5 4 9 9 Si 1.86800 * 119.99855 * 35.28660 * 7 5 4 10 10 H 1.48496 * 109.47383 * 89.67889 * 9 7 5 11 11 H 1.48505 * 109.46918 * 209.68073 * 9 7 5 12 12 H 1.48502 * 109.47141 * 329.67729 * 9 7 5 13 13 C 1.46500 * 120.00046 * 265.64699 * 4 3 2 14 14 C 1.53000 * 109.47023 * 274.87901 * 13 4 3 15 15 N 1.46501 * 109.46897 * 179.97438 * 14 13 4 16 16 C 1.34777 * 119.99873 * 179.97438 * 15 14 13 17 17 O 1.21281 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99935 * 180.02562 * 16 15 14 19 19 H 1.08998 * 107.88020 * 299.99850 * 18 16 15 20 20 C 1.50952 * 108.03225 * 56.55111 * 18 16 15 21 21 C 1.53669 * 110.96186 * 194.28881 * 20 18 16 22 22 C 1.51884 * 106.89578 * 280.91395 * 21 20 18 23 23 N 1.29900 * 127.80511 * 245.15967 * 22 21 20 24 24 N 1.29036 * 109.22238 * 179.73612 * 23 22 21 25 25 C 1.30964 * 109.70856 * 0.06459 * 24 23 22 26 26 N 1.34603 * 124.58248 * 65.10017 * 22 21 20 27 27 C 1.47501 * 125.02469 * 0.50141 * 26 22 21 28 28 C 1.50861 * 108.02762 * 183.45290 * 18 16 15 29 29 H 1.08997 * 109.47613 * 184.82820 * 1 2 3 30 30 H 1.09003 * 109.46916 * 304.82615 * 1 2 3 31 31 H 1.08996 * 109.47348 * 64.82614 * 1 2 3 32 32 H 1.09002 * 109.46938 * 239.99829 * 2 1 3 33 33 H 1.09000 * 109.47189 * 120.00142 * 2 1 3 34 34 H 1.09001 * 109.47506 * 64.63481 * 3 2 1 35 35 H 1.08999 * 109.46983 * 304.63239 * 3 2 1 36 36 H 0.97003 * 120.00318 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46708 * 34.87790 * 13 4 3 38 38 H 1.08996 * 109.47130 * 154.88196 * 13 4 3 39 39 H 1.08999 * 109.47316 * 300.00055 * 14 13 4 40 40 H 1.09009 * 109.47185 * 60.00198 * 14 13 4 41 41 H 0.96997 * 120.00442 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.17836 * 314.66624 * 20 18 16 43 43 H 1.09000 * 109.18348 * 73.90118 * 20 18 16 44 44 H 1.09004 * 109.96994 * 40.25724 * 21 20 18 45 45 H 1.08998 * 109.97250 * 161.47780 * 21 20 18 46 46 H 1.08004 * 126.60858 * 180.09376 * 25 24 23 47 47 H 1.09003 * 109.93018 * 53.44700 * 27 26 22 48 48 H 1.09001 * 109.93043 * 174.57598 * 27 26 22 49 49 H 1.09007 * 109.14343 * 285.98007 * 28 18 16 50 50 H 1.08996 * 109.15326 * 45.12889 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5007 1.4439 -0.1116 5 6 4.0933 1.3866 -1.3448 6 1 3.6388 1.8885 -2.1861 7 6 5.2750 0.6784 -1.5147 8 7 6.1882 1.1144 -2.3563 9 14 5.5691 -0.8933 -0.5490 10 1 5.0472 -2.0517 -1.3177 11 1 7.0259 -1.0677 -0.3190 12 1 4.8683 -0.8100 0.7576 13 6 4.3276 1.5068 1.0961 14 6 4.5074 2.9672 1.5156 15 7 5.3337 3.0301 2.7237 16 6 5.6269 4.2229 3.2782 17 8 5.2064 5.2443 2.7774 18 6 6.4775 4.2876 4.5206 19 1 5.9664 3.7300 5.3054 20 6 7.7848 3.5918 4.2286 21 6 8.5558 3.3033 5.5262 22 6 9.2253 4.6023 5.9401 23 7 10.4974 4.8575 6.0036 24 7 10.6673 6.0759 6.3930 25 6 9.5035 6.6419 6.5935 26 7 8.5674 5.7159 6.3128 27 6 7.1002 5.8471 6.3881 28 6 6.5631 5.7304 4.9531 29 1 -0.3634 -1.0240 0.0865 30 1 -0.3633 0.5869 0.8436 31 1 -0.3634 0.4371 -0.9300 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.7461 1.9318 0.9286 35 1 1.6104 1.9797 -0.8456 36 1 7.0142 0.6197 -2.4748 37 1 3.8394 0.9554 1.8997 38 1 5.3028 1.0648 0.8922 39 1 4.9954 3.5186 0.7120 40 1 3.5321 3.4094 1.7195 41 1 5.6704 2.2133 3.1240 42 1 7.5833 2.6516 3.7153 43 1 8.3928 4.2273 3.5846 44 1 7.8660 2.9758 6.3041 45 1 9.3085 2.5351 5.3491 46 1 9.3283 7.6561 6.9211 47 1 6.6870 5.0498 7.0061 48 1 6.8350 6.8175 6.8078 49 1 7.2283 6.2674 4.2769 50 1 5.5701 6.1774 4.9060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493306685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:28 Heat of formation + Delta-G solvation = 32.769688 kcal Electronic energy + Delta-G solvation = -29381.546944 eV Core-core repulsion = 25444.640056 eV Total energy + Delta-G solvation = -3936.906888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.24363 -41.19736 -38.55111 -37.85325 -35.94355 -35.21215 -34.55816 -33.21753 -32.99312 -30.97566 -29.92769 -27.84285 -27.52563 -25.36219 -24.84381 -23.44737 -23.39797 -22.69504 -21.55476 -21.18946 -20.92426 -18.97686 -18.46923 -18.04084 -17.34209 -17.01714 -16.94190 -16.35389 -16.09375 -15.98675 -15.79669 -15.62349 -15.20684 -15.11321 -14.79541 -14.38941 -14.28787 -14.10727 -13.96258 -13.70018 -13.52652 -13.34019 -13.15528 -12.79789 -12.66767 -12.63784 -12.43789 -12.40198 -12.16094 -12.14374 -11.97175 -11.93050 -11.88846 -11.38632 -11.32805 -11.32307 -11.10079 -10.81496 -10.58208 -10.20712 -10.05133 -8.82934 -8.26709 -5.49584 0.96249 1.34669 1.47177 1.53676 1.61510 1.65138 1.90216 2.13906 2.44423 2.98355 3.23353 3.38481 3.52501 3.58742 3.65726 3.82781 3.89366 4.07137 4.16582 4.20417 4.26106 4.27432 4.27783 4.42648 4.43836 4.49089 4.50648 4.62162 4.67046 4.74712 4.79260 4.87241 4.95103 4.96566 5.03879 5.06067 5.11425 5.13445 5.16290 5.22695 5.28589 5.29201 5.42945 5.48850 5.61146 5.91813 6.01510 6.18881 6.57887 6.99249 7.27353 7.65606 7.76379 8.06915 8.93448 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002634 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.385525 B =10627.733084 C =11544.183432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.145 3.855 4 N -0.608 5.608 5 C -0.272 4.272 6 H 0.032 0.968 7 C -0.007 4.007 8 N -0.929 5.929 9 Si 0.915 3.085 10 H -0.300 1.300 11 H -0.298 1.298 12 H -0.226 1.226 13 C 0.143 3.857 14 C 0.116 3.884 15 N -0.714 5.714 16 C 0.506 3.494 17 O -0.590 6.590 18 C -0.095 4.095 19 H 0.145 0.855 20 C -0.111 4.111 21 C -0.022 4.022 22 C 0.175 3.825 23 N -0.350 5.350 24 N -0.361 5.361 25 C 0.160 3.840 26 N -0.467 5.467 27 C 0.110 3.890 28 C -0.116 4.116 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.024 0.976 40 H 0.058 0.942 41 H 0.414 0.586 42 H 0.098 0.902 43 H 0.041 0.959 44 H 0.132 0.868 45 H 0.109 0.891 46 H 0.257 0.743 47 H 0.132 0.868 48 H 0.138 0.862 49 H 0.046 0.954 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.760 3.934 24.967 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.020 3.980 4 N -0.331 5.331 5 C -0.402 4.402 6 H 0.049 0.951 7 C -0.205 4.205 8 N -0.570 5.570 9 Si 0.740 3.260 10 H -0.228 1.228 11 H -0.225 1.225 12 H -0.148 1.148 13 C 0.016 3.984 14 C -0.011 4.011 15 N -0.366 5.366 16 C 0.293 3.707 17 O -0.470 6.470 18 C -0.116 4.116 19 H 0.162 0.838 20 C -0.150 4.150 21 C -0.061 4.061 22 C -0.095 4.095 23 N -0.189 5.189 24 N -0.199 5.199 25 C -0.129 4.129 26 N -0.157 5.157 27 C -0.010 4.010 28 C -0.155 4.155 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.251 0.749 42 H 0.117 0.883 43 H 0.060 0.940 44 H 0.150 0.850 45 H 0.127 0.873 46 H 0.273 0.727 47 H 0.150 0.850 48 H 0.156 0.844 49 H 0.065 0.935 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.447 4.475 24.434 25.079 hybrid contribution -0.387 -0.558 -0.840 1.080 sum -3.834 3.918 23.595 24.223 Atomic orbital electron populations 1.21658 0.94251 1.01931 1.01925 1.22002 0.96478 0.98820 1.00680 1.21118 0.82101 0.95058 0.99683 1.44090 1.01784 1.85528 1.01656 1.18456 1.06336 1.27142 0.88239 0.95066 1.26010 0.95839 1.00630 0.98065 1.70213 1.06681 1.38345 1.41791 0.86323 0.76281 0.82053 0.81320 1.22813 1.22456 1.14840 1.21370 0.95410 0.92608 0.88979 1.21816 0.93894 0.99949 0.85469 1.45960 1.52917 1.09361 1.28372 1.21425 0.80213 0.82698 0.86349 1.90694 1.55552 1.35659 1.65103 1.20751 0.95905 0.99299 0.95667 0.83775 1.21331 0.94277 1.01615 0.97746 1.20696 0.99540 0.88563 0.97329 1.25379 0.89416 0.93263 1.01440 1.74126 1.15601 1.09118 1.20055 1.74406 1.24198 1.02127 1.19196 1.27082 0.83975 0.99337 1.02534 1.46562 1.10626 1.10258 1.48291 1.22838 0.72631 1.08223 0.97305 1.21456 1.03581 0.94901 0.95522 0.92209 0.91500 0.93249 0.94637 0.92521 0.91372 0.94690 0.92836 0.90497 0.93734 0.95725 0.92366 0.74861 0.88347 0.94021 0.85037 0.87285 0.72705 0.85039 0.84374 0.93545 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.91 71.98 0.71 -2.64 16 2 C -0.14 -4.45 6.24 30.59 0.19 -4.26 16 3 C 0.15 5.16 5.69 86.38 0.49 5.66 16 4 N -0.61 -26.39 2.08 -702.00 -1.46 -27.85 16 5 C -0.27 -14.86 9.78 84.03 0.82 -14.04 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 7 C -0.01 -0.38 4.97 84.86 0.42 0.04 16 8 N -0.93 -56.64 13.97 21.65 0.30 -56.34 16 9 Si 0.91 41.78 26.43 68.60 1.81 43.59 16 10 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 11 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.23 -8.81 5.82 99.48 0.58 -8.23 16 13 C 0.14 5.19 4.05 86.38 0.35 5.53 16 14 C 0.12 4.03 6.00 86.38 0.52 4.55 16 15 N -0.71 -17.95 5.27 -463.05 -2.44 -20.40 16 16 C 0.51 12.71 7.07 87.66 0.62 13.33 16 17 O -0.59 -20.84 15.58 -3.03 -0.05 -20.89 16 18 C -0.10 -1.30 1.95 -12.90 -0.03 -1.32 16 19 H 0.14 0.68 7.67 -2.39 -0.02 0.67 16 20 C -0.11 -1.65 4.89 30.15 0.15 -1.51 16 21 C -0.02 -0.26 6.02 30.45 0.18 -0.07 16 22 C 0.17 3.40 7.03 138.82 0.98 4.38 16 23 N -0.35 -9.97 12.23 -50.00 -0.61 -10.58 16 24 N -0.36 -9.87 12.24 -60.28 -0.74 -10.61 16 25 C 0.16 2.69 12.83 180.26 2.31 5.00 16 26 N -0.47 -6.61 2.72 -515.28 -1.40 -8.00 16 27 C 0.11 0.60 6.53 86.41 0.56 1.17 16 28 C -0.12 -1.52 4.45 30.12 0.13 -1.38 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.04 8.04 -2.39 -0.02 2.02 16 35 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.08 2.25 8.11 -2.39 -0.02 2.23 16 38 H 0.04 1.77 4.53 -2.39 -0.01 1.76 16 39 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.41 7.34 7.47 -92.71 -0.69 6.65 16 42 H 0.10 1.30 6.78 -2.39 -0.02 1.29 16 43 H 0.04 0.93 7.91 -2.39 -0.02 0.91 16 44 H 0.13 0.48 7.89 -2.38 -0.02 0.46 16 45 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.26 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.13 -0.05 7.87 -2.39 -0.02 -0.07 16 48 H 0.14 -0.01 8.13 -2.39 -0.02 -0.03 16 49 H 0.05 0.94 8.08 -2.38 -0.02 0.92 16 50 H 0.10 1.40 7.47 -2.39 -0.02 1.38 16 Total: -1.00 -86.63 395.54 3.94 -82.69 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.11 Total: 13.97 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 8.42 Total: 14.42 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -6.35 Total: -133.79 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.81 Total: 43.59 kcal Total: -86.63 3.94 -82.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493306685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.460 kcal (2) G-P(sol) polarization free energy of solvation -86.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds