Wall clock time and date at job start Tue Mar 31 2020 18:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46838 * 2 1 4 4 N 1.46500 * 109.46937 * 179.97438 * 3 2 1 5 5 C 1.34811 * 126.59793 * 125.34099 * 4 3 2 6 6 C 1.36601 * 106.84256 * 180.15174 * 5 4 3 7 7 C 1.47520 * 125.77147 * 179.84157 * 6 5 4 8 8 O 1.21600 * 120.00054 * 353.97495 * 7 6 5 9 9 N 1.34778 * 120.00187 * 174.25521 * 7 6 5 10 10 C 1.46923 * 120.63284 * 183.55307 * 9 7 6 11 11 C 1.53615 * 108.54661 * 126.36650 * 10 9 7 12 12 C 1.53045 * 109.24103 * 54.85538 * 11 10 9 13 13 C 1.53004 * 109.44794 * 178.50122 * 12 11 10 14 14 N 1.46505 * 109.46900 * 295.05750 * 13 12 11 15 15 C 1.46501 * 119.99895 * 90.00474 * 14 13 12 16 16 C 1.36933 * 119.99945 * 270.00312 * 14 13 12 17 17 H 1.08006 * 119.99853 * 139.38163 * 16 14 13 18 18 C 1.38813 * 120.00330 * 319.37801 * 16 14 13 19 19 N 1.31620 * 120.00285 * 160.95408 * 18 16 14 20 20 Si 1.86803 * 119.99879 * 340.95128 * 18 16 14 21 21 H 1.48493 * 109.47040 * 95.26835 * 20 18 16 22 22 H 1.48494 * 109.47173 * 215.27062 * 20 18 16 23 23 H 1.48499 * 109.46840 * 335.26805 * 20 18 16 24 24 C 1.53045 * 109.53633 * 298.51264 * 12 11 10 25 25 C 1.46924 * 120.62733 * 3.83057 * 9 7 6 26 26 N 1.34399 * 108.45706 * 359.57430 * 6 5 4 27 27 N 1.28767 * 109.52371 * 0.26376 * 26 6 5 28 28 H 1.09000 * 109.47336 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47357 * 299.99998 * 1 2 3 30 30 H 1.09003 * 109.46686 * 60.00217 * 1 2 3 31 31 H 1.09000 * 109.47171 * 240.00519 * 2 1 3 32 32 H 1.09003 * 109.47210 * 119.99826 * 2 1 3 33 33 H 1.09008 * 109.47070 * 60.00442 * 3 2 1 34 34 H 1.09000 * 109.47762 * 299.99638 * 3 2 1 35 35 H 1.08003 * 126.58268 * 359.97438 * 5 4 3 36 36 H 1.09005 * 109.58329 * 246.20408 * 10 9 7 37 37 H 1.08998 * 109.58398 * 6.62437 * 10 9 7 38 38 H 1.09003 * 109.63767 * 294.86836 * 11 10 9 39 39 H 1.08997 * 109.43491 * 174.72359 * 11 10 9 40 40 H 1.09001 * 109.46214 * 58.53138 * 12 11 10 41 41 H 1.08996 * 109.47456 * 55.05817 * 13 12 11 42 42 H 1.08999 * 109.46581 * 175.06350 * 13 12 11 43 43 H 1.08990 * 109.46947 * 92.79850 * 15 14 13 44 44 H 1.08998 * 109.47007 * 212.80211 * 15 14 13 45 45 H 1.08999 * 109.46629 * 332.79687 * 15 14 13 46 46 H 0.96997 * 119.99938 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.49848 * 301.41018 * 24 12 11 48 48 H 1.08997 * 109.52206 * 181.33617 * 24 12 11 49 49 H 1.09007 * 109.59005 * 353.37371 * 25 9 7 50 50 H 1.08999 * 109.58569 * 113.65806 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3090 2.0685 -0.8820 6 6 5.5945 1.7987 -0.5068 7 6 6.8109 2.2778 -1.1901 8 8 6.7195 2.8851 -2.2396 9 7 8.0240 2.0376 -0.6541 10 6 9.2392 2.5747 -1.2813 11 6 10.0292 3.3595 -0.2231 12 6 10.2920 2.4553 0.9834 13 6 11.1110 3.2207 2.0248 14 7 12.4333 3.5299 1.4750 15 6 12.6485 4.7816 0.7447 16 6 13.4681 2.6491 1.6438 17 1 14.1549 2.4608 0.8318 18 6 13.6344 1.9981 2.8585 19 7 14.3619 0.9033 2.9243 20 14 12.8257 2.6761 4.3999 21 1 11.5272 1.9902 4.6202 22 1 13.7129 2.4433 5.5677 23 1 12.5942 4.1339 4.2371 24 6 8.9592 2.0239 1.5996 25 6 8.1566 1.2286 0.5651 26 7 5.5636 1.0277 0.5936 27 7 4.3404 0.7966 0.9230 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8901 34 1 1.6767 1.9564 -0.8900 35 1 3.9969 2.6660 -1.7258 36 1 9.8476 1.7539 -1.6613 37 1 8.9645 3.2385 -2.1010 38 1 9.4538 4.2296 0.0930 39 1 10.9790 3.6853 -0.6472 40 1 10.8461 1.5732 0.6624 41 1 10.5981 4.1477 2.2808 42 1 11.2237 2.6086 2.9197 43 1 13.0051 5.5473 1.4335 44 1 13.3904 4.6226 -0.0378 45 1 11.7100 5.1058 0.2952 46 1 14.4784 0.4486 3.7732 47 1 8.3938 2.9066 1.8985 48 1 9.1469 1.3993 2.4730 49 1 7.1674 1.0040 0.9642 50 1 8.6763 0.2992 0.3322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494209435.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:25 Heat of formation + Delta-G solvation = 93.264295 kcal Electronic energy + Delta-G solvation = -29524.142760 eV Core-core repulsion = 25589.859115 eV Total energy + Delta-G solvation = -3934.283645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53706 -39.79785 -37.65798 -36.49368 -35.58916 -33.23998 -32.59145 -31.44291 -31.33305 -30.39330 -27.68172 -27.35924 -25.99249 -24.28016 -23.46824 -22.97871 -22.34101 -21.85761 -20.82113 -20.29463 -19.16252 -17.71204 -16.77685 -16.57765 -16.37965 -16.00353 -15.56753 -15.28745 -15.16902 -14.82130 -14.26631 -14.11632 -13.93889 -13.74713 -13.49779 -13.34771 -13.13534 -12.88790 -12.80229 -12.67360 -12.41226 -12.34878 -12.06299 -11.91575 -11.72776 -11.49002 -11.46280 -11.13815 -10.84944 -10.73378 -10.68084 -10.48043 -10.41321 -10.16325 -10.11122 -9.69926 -9.54521 -9.50726 -9.33491 -8.51405 -8.39610 -6.66950 -5.93475 -3.38925 0.85799 1.51132 1.66921 3.03222 3.23606 3.35009 3.49903 3.56410 3.79604 3.93766 4.11479 4.35247 4.46839 4.57266 4.59694 4.68434 4.72898 4.92968 5.01917 5.06690 5.12597 5.33565 5.35370 5.36195 5.43705 5.44843 5.47301 5.54848 5.57118 5.68646 5.90438 5.97460 6.01923 6.19182 6.26912 6.29686 6.34406 6.39756 6.43261 6.48499 6.58742 6.70471 6.78421 6.81669 6.95206 7.13892 7.46704 7.72193 8.14561 8.16900 8.45415 9.06277 9.76983 10.20480 11.22152 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.002538 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.820685 B =11028.163723 C =11905.068962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.359 5.359 5 C 0.091 3.909 6 C -0.091 4.091 7 C 0.600 3.400 8 O -0.551 6.551 9 N -0.586 5.586 10 C 0.111 3.889 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.145 3.855 14 N -0.612 5.612 15 C 0.121 3.879 16 C -0.265 4.265 17 H 0.076 0.924 18 C 0.035 3.965 19 N -0.904 5.904 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.303 1.303 23 H -0.271 1.271 24 C -0.126 4.126 25 C 0.069 3.931 26 N -0.202 5.202 27 N -0.064 5.064 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.204 0.796 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.004 0.996 44 H 0.039 0.961 45 H 0.034 0.966 46 H 0.262 0.738 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.139 0.861 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.865 1.140 -7.562 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.145 5.145 5 C -0.066 4.066 6 C -0.230 4.230 7 C 0.385 3.615 8 O -0.429 6.429 9 N -0.317 5.317 10 C -0.011 4.011 11 C -0.158 4.158 12 C -0.128 4.128 13 C 0.020 3.980 14 N -0.336 5.336 15 C -0.024 4.024 16 C -0.394 4.394 17 H 0.094 0.906 18 C -0.165 4.165 19 N -0.546 5.546 20 Si 0.714 3.286 21 H -0.213 1.213 22 H -0.231 1.231 23 H -0.196 1.196 24 C -0.165 4.165 25 C -0.055 4.055 26 N -0.074 5.074 27 N -0.044 5.044 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.221 0.779 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.023 0.977 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.155 0.845 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.808 0.481 -6.769 29.596 hybrid contribution -0.431 0.832 0.221 0.963 sum -29.239 1.313 -6.548 29.992 Atomic orbital electron populations 1.21706 0.93799 1.02943 1.02348 1.21838 0.96997 0.94497 1.04342 1.22184 0.72484 1.00183 1.05206 1.50553 1.08809 1.34912 1.20197 1.23352 0.90014 0.97188 0.96038 1.21526 0.94670 1.07889 0.98897 1.16807 0.81694 0.79249 0.83716 1.90775 1.86344 1.43294 1.22458 1.47973 1.05429 1.50893 1.27392 1.21858 0.84507 0.98433 0.96259 1.22053 0.99950 0.97850 0.95973 1.21761 0.94690 0.99889 0.96415 1.21170 0.85764 0.96365 0.94742 1.44018 1.05658 1.18495 1.65448 1.21185 0.98135 0.88045 0.95055 1.18764 1.06619 1.17410 0.96606 0.90627 1.25539 0.96782 0.96643 0.97572 1.69842 1.42278 1.16654 1.25787 0.86823 0.77788 0.80330 0.83700 1.21282 1.23130 1.19590 1.21907 0.96514 0.99967 0.98105 1.22892 1.05438 0.93083 0.84045 1.74195 1.11733 1.11139 1.10375 1.82022 0.93707 1.16838 1.11795 0.91580 0.92046 0.92227 0.90980 0.89922 0.88266 0.87661 0.77888 0.91181 0.89471 0.92659 0.89630 0.90128 0.94681 0.93030 0.97741 0.94242 0.94702 0.92796 0.92418 0.90889 0.84480 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.36 9.91 37.16 0.37 0.00 16 2 C -0.14 -0.56 6.14 -26.73 -0.16 -0.73 16 3 C 0.12 0.47 6.54 -4.04 -0.03 0.45 16 4 N -0.36 -2.97 3.69 -61.06 -0.23 -3.20 16 5 C 0.09 0.82 11.28 -16.83 -0.19 0.63 16 6 C -0.09 -1.16 6.77 -83.55 -0.57 -1.72 16 7 C 0.60 9.00 7.69 -12.48 -0.10 8.90 16 8 O -0.55 -9.18 16.30 5.28 0.09 -9.09 16 9 N -0.59 -8.92 2.97 -173.74 -0.52 -9.44 16 10 C 0.11 1.69 6.45 -3.49 -0.02 1.67 16 11 C -0.12 -1.97 4.42 -26.39 -0.12 -2.09 16 12 C -0.11 -1.98 2.36 -90.57 -0.21 -2.20 16 13 C 0.15 3.15 3.95 -4.04 -0.02 3.13 16 14 N -0.61 -14.62 2.26 -181.12 -0.41 -15.03 16 15 C 0.12 2.45 9.67 59.85 0.58 3.03 16 16 C -0.27 -7.46 9.93 -15.06 -0.15 -7.61 16 17 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 18 C 0.03 1.02 5.34 -17.43 -0.09 0.92 16 19 N -0.90 -27.80 13.97 55.49 0.78 -27.03 16 20 Si 0.88 22.74 24.96 -169.99 -4.24 18.49 16 21 H -0.28 -7.08 6.72 56.52 0.38 -6.70 16 22 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 23 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 24 C -0.13 -2.06 5.36 -26.61 -0.14 -2.20 16 25 C 0.07 1.03 6.31 -3.71 -0.02 1.00 16 26 N -0.20 -2.69 8.63 32.85 0.28 -2.41 16 27 N -0.06 -0.76 13.65 60.35 0.82 0.07 16 28 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.30 8.14 -51.92 -0.42 -0.13 16 34 H 0.11 0.13 8.08 -51.93 -0.42 -0.29 16 35 H 0.20 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.31 7.02 -51.93 -0.36 0.95 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.46 5.83 -51.93 -0.30 1.16 16 40 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 42 H 0.05 1.23 3.42 -51.93 -0.18 1.06 16 43 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 45 H 0.03 0.60 6.08 -51.93 -0.32 0.29 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.14 2.00 3.61 -131.55 -0.47 1.52 16 50 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -34.32 389.92 -6.81 -41.13 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -8.39 Total: -2.58 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -0.87 Total: 3.21 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.73 Total: -57.03 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.24 Total: 18.49 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.32 -6.81 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494209435.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.393 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds