Wall clock time and date at job start Tue Mar 31 2020 18:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46838 * 2 1 4 4 N 1.46500 * 109.46937 * 179.97438 * 3 2 1 5 5 C 1.34811 * 126.59793 * 125.34099 * 4 3 2 6 6 C 1.36601 * 106.84256 * 180.15174 * 5 4 3 7 7 C 1.47520 * 125.77147 * 179.84157 * 6 5 4 8 8 O 1.21600 * 120.00054 * 353.97495 * 7 6 5 9 9 N 1.34778 * 120.00187 * 174.25521 * 7 6 5 10 10 C 1.46923 * 120.63284 * 183.55307 * 9 7 6 11 11 C 1.53615 * 108.54661 * 126.36650 * 10 9 7 12 12 C 1.53045 * 109.24103 * 54.85538 * 11 10 9 13 13 C 1.53004 * 109.44794 * 178.50122 * 12 11 10 14 14 N 1.46505 * 109.46900 * 295.05750 * 13 12 11 15 15 C 1.46501 * 119.99895 * 90.00474 * 14 13 12 16 16 C 1.36933 * 119.99945 * 270.00312 * 14 13 12 17 17 H 1.08006 * 119.99853 * 139.38163 * 16 14 13 18 18 C 1.38813 * 120.00330 * 319.37801 * 16 14 13 19 19 N 1.31620 * 120.00285 * 160.95408 * 18 16 14 20 20 Si 1.86803 * 119.99879 * 340.95128 * 18 16 14 21 21 H 1.48493 * 109.47040 * 95.26835 * 20 18 16 22 22 H 1.48494 * 109.47173 * 215.27062 * 20 18 16 23 23 H 1.48499 * 109.46840 * 335.26805 * 20 18 16 24 24 C 1.53045 * 109.53633 * 298.51264 * 12 11 10 25 25 C 1.46924 * 120.62733 * 3.83057 * 9 7 6 26 26 N 1.34399 * 108.45706 * 359.57430 * 6 5 4 27 27 N 1.28767 * 109.52371 * 0.26376 * 26 6 5 28 28 H 1.09000 * 109.47336 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47357 * 299.99998 * 1 2 3 30 30 H 1.09003 * 109.46686 * 60.00217 * 1 2 3 31 31 H 1.09000 * 109.47171 * 240.00519 * 2 1 3 32 32 H 1.09003 * 109.47210 * 119.99826 * 2 1 3 33 33 H 1.09008 * 109.47070 * 60.00442 * 3 2 1 34 34 H 1.09000 * 109.47762 * 299.99638 * 3 2 1 35 35 H 1.08003 * 126.58268 * 359.97438 * 5 4 3 36 36 H 1.09005 * 109.58329 * 246.20408 * 10 9 7 37 37 H 1.08998 * 109.58398 * 6.62437 * 10 9 7 38 38 H 1.09003 * 109.63767 * 294.86836 * 11 10 9 39 39 H 1.08997 * 109.43491 * 174.72359 * 11 10 9 40 40 H 1.09001 * 109.46214 * 58.53138 * 12 11 10 41 41 H 1.08996 * 109.47456 * 55.05817 * 13 12 11 42 42 H 1.08999 * 109.46581 * 175.06350 * 13 12 11 43 43 H 1.08990 * 109.46947 * 92.79850 * 15 14 13 44 44 H 1.08998 * 109.47007 * 212.80211 * 15 14 13 45 45 H 1.08999 * 109.46629 * 332.79687 * 15 14 13 46 46 H 0.96997 * 119.99938 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.49848 * 301.41018 * 24 12 11 48 48 H 1.08997 * 109.52206 * 181.33617 * 24 12 11 49 49 H 1.09007 * 109.59005 * 353.37371 * 25 9 7 50 50 H 1.08999 * 109.58569 * 113.65806 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3090 2.0685 -0.8820 6 6 5.5945 1.7987 -0.5068 7 6 6.8109 2.2778 -1.1901 8 8 6.7195 2.8851 -2.2396 9 7 8.0240 2.0376 -0.6541 10 6 9.2392 2.5747 -1.2813 11 6 10.0292 3.3595 -0.2231 12 6 10.2920 2.4553 0.9834 13 6 11.1110 3.2207 2.0248 14 7 12.4333 3.5299 1.4750 15 6 12.6485 4.7816 0.7447 16 6 13.4681 2.6491 1.6438 17 1 14.1549 2.4608 0.8318 18 6 13.6344 1.9981 2.8585 19 7 14.3619 0.9033 2.9243 20 14 12.8257 2.6761 4.3999 21 1 11.5272 1.9902 4.6202 22 1 13.7129 2.4433 5.5677 23 1 12.5942 4.1339 4.2371 24 6 8.9592 2.0239 1.5996 25 6 8.1566 1.2286 0.5651 26 7 5.5636 1.0277 0.5936 27 7 4.3404 0.7966 0.9230 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8901 34 1 1.6767 1.9564 -0.8900 35 1 3.9969 2.6660 -1.7258 36 1 9.8476 1.7539 -1.6613 37 1 8.9645 3.2385 -2.1010 38 1 9.4538 4.2296 0.0930 39 1 10.9790 3.6853 -0.6472 40 1 10.8461 1.5732 0.6624 41 1 10.5981 4.1477 2.2808 42 1 11.2237 2.6086 2.9197 43 1 13.0051 5.5473 1.4335 44 1 13.3904 4.6226 -0.0378 45 1 11.7100 5.1058 0.2952 46 1 14.4784 0.4486 3.7732 47 1 8.3938 2.9066 1.8985 48 1 9.1469 1.3993 2.4730 49 1 7.1674 1.0040 0.9642 50 1 8.6763 0.2992 0.3322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494209435.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:24 Heat of formation + Delta-G solvation = 71.111656 kcal Electronic energy + Delta-G solvation = -29525.103371 eV Core-core repulsion = 25589.859115 eV Total energy + Delta-G solvation = -3935.244256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.34355 -40.98921 -39.08518 -37.26513 -36.92904 -34.41314 -33.65640 -33.26308 -32.49193 -31.44489 -28.99555 -28.13233 -27.76712 -25.58625 -24.43703 -23.99573 -23.39853 -22.70878 -22.33547 -21.52738 -20.31043 -18.70081 -18.60165 -17.51678 -17.30223 -17.24718 -16.95701 -16.26239 -16.14058 -15.84540 -15.65355 -15.37491 -15.16290 -15.04010 -14.86849 -14.53281 -14.30527 -14.18774 -13.93149 -13.67137 -13.61704 -13.31298 -13.10302 -13.04301 -12.88878 -12.72397 -12.60866 -12.35625 -12.21664 -12.10551 -11.98485 -11.81079 -11.76672 -11.60824 -11.36785 -11.30098 -11.16799 -10.69064 -10.62190 -10.39448 -9.66488 -8.65097 -8.17940 -5.60215 0.13783 0.54723 1.08706 1.30228 1.39951 1.51594 1.93319 2.17955 2.42443 3.03321 3.09769 3.30563 3.45999 3.66024 3.83436 3.88633 3.93135 3.96339 4.08830 4.15332 4.16169 4.21934 4.32653 4.39326 4.48233 4.52151 4.58658 4.66988 4.71493 4.74365 4.77361 4.79796 4.95939 4.96829 5.01554 5.08908 5.11914 5.13419 5.16792 5.17761 5.24857 5.31954 5.38655 5.49509 5.58177 5.67948 5.98527 6.19421 6.32516 6.81250 7.03087 7.07610 7.65094 8.09173 9.01618 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.002538 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.820685 B =11028.163723 C =11905.068962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.345 5.345 5 C 0.114 3.886 6 C -0.122 4.122 7 C 0.601 3.399 8 O -0.570 6.570 9 N -0.592 5.592 10 C 0.116 3.884 11 C -0.110 4.110 12 C -0.098 4.098 13 C 0.141 3.859 14 N -0.623 5.623 15 C 0.120 3.880 16 C -0.253 4.253 17 H 0.038 0.962 18 C -0.021 4.021 19 N -0.951 5.951 20 Si 0.946 3.054 21 H -0.272 1.272 22 H -0.310 1.310 23 H -0.262 1.262 24 C -0.119 4.119 25 C 0.075 3.925 26 N -0.226 5.226 27 N -0.086 5.086 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.240 0.760 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.030 0.970 43 H 0.008 0.992 44 H 0.037 0.963 45 H 0.067 0.933 46 H 0.262 0.738 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.149 0.851 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.643 3.005 -7.927 33.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.008 4.008 4 N -0.130 5.130 5 C -0.044 4.044 6 C -0.261 4.261 7 C 0.388 3.612 8 O -0.450 6.450 9 N -0.322 5.322 10 C -0.006 4.006 11 C -0.148 4.148 12 C -0.119 4.119 13 C 0.016 3.984 14 N -0.348 5.348 15 C -0.024 4.024 16 C -0.384 4.384 17 H 0.056 0.944 18 C -0.217 4.217 19 N -0.595 5.595 20 Si 0.775 3.225 21 H -0.199 1.199 22 H -0.238 1.238 23 H -0.187 1.187 24 C -0.158 4.158 25 C -0.048 4.048 26 N -0.098 5.098 27 N -0.065 5.065 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.256 0.744 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.027 0.973 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.165 0.835 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -32.642 2.359 -7.129 33.495 hybrid contribution 0.636 0.248 0.208 0.713 sum -32.007 2.607 -6.921 32.850 Atomic orbital electron populations 1.21679 0.92304 1.03033 1.03334 1.21786 0.98170 0.94432 1.02967 1.22684 0.69814 1.00506 1.07808 1.50852 1.10106 1.33203 1.18793 1.23842 0.88726 0.95802 0.95984 1.21418 0.95103 1.09762 0.99829 1.17056 0.82065 0.78606 0.83426 1.90753 1.86706 1.44262 1.23263 1.48001 1.05684 1.51087 1.27445 1.21750 0.84598 0.98278 0.95989 1.21925 0.99954 0.97756 0.95134 1.21575 0.95061 0.98642 0.96650 1.21262 0.85163 0.97367 0.94615 1.44137 1.05594 1.19182 1.65880 1.21290 0.99950 0.86421 0.94750 1.18635 1.06808 1.17499 0.95424 0.94384 1.26145 0.98171 0.96861 1.00509 1.69970 1.44926 1.18240 1.26380 0.85796 0.77174 0.79961 0.79543 1.19879 1.23840 1.18669 1.21837 0.95368 1.00472 0.98152 1.22847 1.05709 0.92493 0.83740 1.74039 1.12813 1.11866 1.11044 1.81943 0.93660 1.17903 1.13022 0.92020 0.91449 0.90814 0.91788 0.91955 0.86796 0.83935 0.74366 0.91636 0.88893 0.91507 0.90347 0.93431 0.92346 0.95230 0.97333 0.94457 0.91403 0.92899 0.91331 0.91405 0.83462 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.34 9.91 71.98 0.71 0.37 16 2 C -0.14 -0.82 6.14 30.59 0.19 -0.63 16 3 C 0.11 0.48 6.54 86.38 0.56 1.04 16 4 N -0.34 -4.73 3.69 -347.08 -1.28 -6.01 16 5 C 0.11 1.71 11.28 83.85 0.95 2.66 16 6 C -0.12 -2.88 6.77 40.82 0.28 -2.60 16 7 C 0.60 17.14 7.69 86.69 0.67 17.81 16 8 O -0.57 -17.99 16.30 -4.03 -0.07 -18.06 16 9 N -0.59 -17.43 2.97 -821.85 -2.44 -19.87 16 10 C 0.12 3.43 6.45 86.51 0.56 3.99 16 11 C -0.11 -3.44 4.42 30.82 0.14 -3.30 16 12 C -0.10 -3.61 2.36 -10.76 -0.03 -3.64 16 13 C 0.14 5.93 3.95 86.38 0.34 6.27 16 14 N -0.62 -29.47 2.26 -726.94 -1.64 -31.11 16 15 C 0.12 4.68 9.67 127.77 1.24 5.91 16 16 C -0.25 -14.59 9.93 84.03 0.83 -13.76 16 17 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 18 C -0.02 -1.22 5.34 84.86 0.45 -0.77 16 19 N -0.95 -60.39 13.97 21.65 0.30 -60.09 16 20 Si 0.95 47.45 24.96 68.60 1.71 49.16 16 21 H -0.27 -12.93 6.72 99.48 0.67 -12.26 16 22 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 23 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 24 C -0.12 -3.79 5.36 30.67 0.16 -3.62 16 25 C 0.08 2.22 6.31 86.36 0.54 2.76 16 26 N -0.23 -5.76 8.63 -50.00 -0.43 -6.19 16 27 N -0.09 -1.90 13.65 37.02 0.51 -1.39 16 28 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.07 0.09 8.14 -2.39 -0.02 0.08 16 30 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 34 H 0.14 -0.37 8.08 -2.39 -0.02 -0.39 16 35 H 0.24 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.09 2.67 7.02 -2.39 -0.02 2.65 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.08 2.57 5.83 -2.39 -0.01 2.56 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 42 H 0.03 1.39 3.42 -2.39 -0.01 1.38 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.04 1.45 8.06 -2.39 -0.02 1.43 16 45 H 0.07 2.18 6.08 -2.39 -0.01 2.17 16 46 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 47 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 48 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.15 4.21 3.61 -105.42 -0.38 3.83 16 50 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -76.34 389.92 4.78 -71.56 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.52 Total: 9.50 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 7.60 Total: 12.50 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -4.98 Total: -124.67 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.07 Total: -18.06 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.71 Total: 49.16 kcal Total: -76.34 4.78 -71.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494209435.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.676 kcal (2) G-P(sol) polarization free energy of solvation -76.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds